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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048874 ID=TCONS_00048874|Name=TCONS_00048874|organism=Clytia hemisphaerica|type=transcript|length=2029bp
gtaatctcatggttttgAGGGGGAATTCGGGATGAGTTTCTCACaaggat
aatttcaaaaattttcaaaattagaccGAGAGAAACTTATCCAAATTGAT
TTTGGTTAATTTTGCTTGATATTTCAATGTTCTAAGGGTTTATTATTTAA
ATGTTCATTGTCTAAGAAACTTATGGAACAGCCTATTAATAGAAAAAACA
ATGCCTTCTCATGTCTTTTTTTCAGGCCAAAACCTATGCTGACGATGTAA
ACTTTGGTAATCATTTTACTGACGAGGAGGACGGGCCATCATCTTTCGTC
GATCCTTCGTGTCGCCACCGACCAACTAAAAGGACCTGCTACTCCACAGA
TGAAGAAGGAGAAGTGCCAAAGAAAAAACACAGGAGAAGATCAAATACAA
CAAATACTTTCAAGAGTATTTTGGCAAAGGCAAAATCGAGTTTTTTTGTT
TGGGAGAAGTGTGGAGATGGTGCTTATACAATAACAACAACCGAAAGTTT
ACNATCGAGTTTTTTTGTTTGGGAGAAGTGTGGAGATGGTGCTTATACAA
TAACAACAACCGAAAGTTTACAATACATCGTGACCATCAAAACCACGCCA
ACATGTTCTTGCCCATATTTTCAATCCGAAAAACGCATTAAAACCACTTG
CAAGCACATCGTGGCAACACTAATGACTAGGTTTGGTGTGGATGAGAAAA
ACCCACTCCTAGCCCAGTTGTCCTTTACTCGTTACGAAGTTCAAGGGTTA
AAAGATCAGCAATCTTCAACGACCAGATCCACGCCACAATCTTCAACGTC
CAGACCCTCACCACAATCTTCAACGTCCAGACCCTCACCACAATCTTCAA
CGTCCAGACCCTCACCACAATCTTCAACGTCCAGACCCTCACCACAATCT
TCAACGTCCAGACCCTCACCACAATCTTCAACGTCCAGACCCTCACCACA
ATCTTCAACGTCCAGACCCTCACCACAATCTTCAACGTCCAGACCCTCAC
CACAATCTTCAACGTCCAGACCCTCACCACAATCTTCAACGTCCAGACCC
ACACCACAATCTTCAACGACCAGACCCTCGCCACAATCTTCAACGTCCAG
ACCCTCACCACAATCTTCAACCTCCAGACCCTCACCACAATCTTCAACGT
CCAGACCCTCGACACAATCAGCTAATTGGTAAGTCTAAAATGTTTAGGAT
AATTTTATTACACACAAATTTCATGagcaaattttttattatctGATAAA
TTTTGACCTTGACCAAGATATGAAAATTAGGGCAAATTACTAGGTGGCAA
AAAATTGACCGGCTCCAAGATTATATATATGTCTTATGGAGTTGTCATAT
AAAATTAGAACAAAAACAATGGATGTGAAAAAAATCGCGAGACCGTTTTT
CGGCAATTAAAGTCTGTTTCGAAATTATGTGGAAATTTTACTTAGGATAG
GGCTTATAGtaaaaaatagccaaaatgttTGACATACTCCAAAAGCCTCT
ATCGGAGAGTACATAGTTAAGATCAGCGAGGTTCAGATTTGTTACAAATC
attaatgggcttttccagaaaaaatctcATGGGGTTCGCTCATGGGGGTA
GATATCATTATaggtattattttttcaatgatttacCCCTGGTCATTTCC
ATTGTCAAATCAACCCCCTGGGCACCAAAATTTACCTCTGGACATTGCaa
tattttaggaatttttcGGTACCCCTAGACGATTcatcctccaacccccc
ccctcaatgtatgttttttttctgggaGAGCCCAATtcgtcattttttta
aatggtagaaaaaaatcttcaatttccttcctcttctttttttgaaaaaa
aatccactaaaacattcttttattattATCCAGGTTAACAGAAAGTGAAT
TGCAGGGTATCTTTGAATCGTCTCCAACAGATGTCCCTCAAGAATGGCAT
ATTAGGAAATTATTGGaacgaaaaattgcaaaatgttgCGCCTGTGGTAG
CTCCATGCCAGCACAGAAGATTATCATTT Run BLAST on NCBI protein sequence of TCONS_00048874-protein >TCONS_00048874-protein ID=TCONS_00048874-protein|Name=TCONS_00048874-protein|organism=Clytia hemisphaerica|type=polypeptide|length=323bp
MSFFQAKTYADDVNFGNHFTDEEDGPSSFVDPSCRHRPTKRTCYSTDEEG
EVPKKKHRRRSNTTNTFKSILAKAKSSFFVWEKCGDGAYTITTTESLXSS
FFVWEKCGDGAYTITTTESLQYIVTIKTTPTCSCPYFQSEKRIKTTCKHI
VATLMTRFGVDEKNPLLAQLSFTRYEVQGLKDQQSSTTRSTPQSSTSRPS
PQSSTSRPSPQSSTSRPSPQSSTSRPSPQSSTSRPSPQSSTSRPSPQSST
SRPSPQSSTSRPSPQSSTSRPSPQSSTSRPTPQSSTTRPSPQSSTSRPSP
QSSTSRPSPQSSTSRPSTQSANW Run BLAST on NCBI transcript from alignment at scaffold_147:276617..278645 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048874 ID=TCONS_00048874|Name=TCONS_00048874|organism=Clytia hemisphaerica|type=transcript|length=2029bp|location=Sequence derived from alignment at scaffold_147:276617..278645 (Clytia hemisphaerica)
AAATGATAATCTTCTGTGCTGGCATGGAGCTACCACAGGCGcaacatttt
gcaatttttcgttCCAATAATTTCCTAATATGCCATTCTTGAGGGACATC
TGTTGGAGACGATTCAAAGATACCCTGCAATTCACTTTCTGTTAACCTGG
ATaataataaaagaatgttttagtggattttttttcaaaaaaagaagagg
aaggaaattgaagatttttttctaccatttaaaaaaatgacgaATTGGGC
TCtcccagaaaaaaaacatacattgagggggggggttggaggatgAATCG
TCTAGGGGTACCgaaaaattcctaaaatattGCAATGTCCAGAGGTAAAT
TTTGGTGCCCAGGGGGTTGATTTGACAATGGAAATGACCAGGGgtaaatc
attgaaaaaataatacctATAATGATATCTACCCCCATGAGCGAACCCCA
TgagattttttctggaaaagcccattaatGATTTGTAACAAATCTGAACC
TCGCTGATCTTAACTATGTACTCTCCGATAGAGGCTTTTGGAGTATGTCA
aacattttggctattttttaCTATAAGCCCTATCCTAAGTAAAATTTCCA
CATAATTTCGAAACAGACTTTAATTGCCGAAAAACGGTCTCGCGATTTTT
TTCACATCCATTGTTTTTGTTCTAATTTTATATGACAACTCCATAAGACA
TATATATAATCTTGGAGCCGGTCAATTTTTTGCCACCTAGTAATTTGCCC
TAATTTTCATATCTTGGTCAAGGTCAAAATTTATCagataataaaaaatt
tgctCATGAAATTTGTGTGTAATAAAATTATCCTAAACATTTTAGACTTA
CCAATTAGCTGATTGTGTCGAGGGTCTGGACGTTGAAGATTGTGGTGAGG
GTCTGGAGGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGC
GAGGGTCTGGTCGTTGAAGATTGTGGTGTGGGTCTGGACGTTGAAGATTG
TGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAG
ATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGACGTT
GAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGA
CGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTC
TGGACGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGCGTG
GATCTGGTCGTTGAAGATTGCTGATCTTTTAACCCTTGAACTTCGTAACG
AGTAAAGGACAACTGGGCTAGGAGTGGGTTTTTCTCATCCACACCAAACC
TAGTCATTAGTGTTGCCACGATGTGCTTGCAAGTGGTTTTAATGCGTTTT
TCGGATTGAAAATATGGGCAAGAACATGTTGGCGTGGTTTTGATGGTCAC
GATGTATTGTAAACTTTCGGTTGTTGTTATTGTATAAGCACCATCTCCAC
ACTTCTCCCAAACAAAAAAACTCGATNGTAAACTTTCGGTTGTTGTTATT
GTATAAGCACCATCTCCACACTTCTCCCAAACAAAAAAACTCGATTTTGC
CTTTGCCAAAATACTCTTGAAAGTATTTGTTGTATTTGATCTTCTCCTGT
GTTTTTTCTTTGGCACTTCTCCTTCTTCATCTGTGGAGTAGCAGGTCCTT
TTAGTTGGTCGGTGGCGACACGAAGGATCGACGAAAGATGATGGCCCGTC
CTCCTCGTCAGTAAAATGATTACCAAAGTTTACATCGTCAGCATAGGTTT
TGGCCTGAAAAAAAGACATGAGAAGGCATTGTTTTTTCTATTAATAGGCT
GTTCCATAAGTTTCTTAGACAATGAACATTTAAATAATAAACCCTTAGAA
CATTGAAATATCAAGCAAAATTAACCAAAATCAATTTGGATAAGTTTCTC
TCggtctaattttgaaaatttttgaaattatccttGTGAGAAACTCATCC
CGAATTCCCCCTcaaaaccatgagattac Coding sequence (CDS) from alignment at scaffold_147:276617..278645 >TCONS_00048874 ID=TCONS_00048874|Name=TCONS_00048874|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_147:276617..278645 (Clytia hemisphaerica)
TTACCAATTAGCTGATTGTGTCGAGGGTCTGGACGTTGAAGATTGTGGTG
AGGGTCTGGAGGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGT
GGCGAGGGTCTGGTCGTTGAAGATTGTGGTGTGGGTCTGGACGTTGAAGA
TTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGACGTTG
AAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGAC
GTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGGGTCT
GGACGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGTGAGG
GTCTGGACGTTGAAGATTGTGGTGAGGGTCTGGACGTTGAAGATTGTGGC
GTGGATCTGGTCGTTGAAGATTGCTGATCTTTTAACCCTTGAACTTCGTA
ACGAGTAAAGGACAACTGGGCTAGGAGTGGGTTTTTCTCATCCACACCAA
ACCTAGTCATTAGTGTTGCCACGATGTGCTTGCAAGTGGTTTTAATGCGT
TTTTCGGATTGAAAATATGGGCAAGAACATGTTGGCGTGGTTTTGATGGT
CACGATGTATTGTAAACTTTCGGTTGTTGTTATTGTATAAGCACCATCTC
CACACTTCTCCCAAACAAAAAAACTCGATNGTAAACTTTCGGTTGTTGTT
ATTGTATAAGCACCATCTCCACACTTCTCCCAAACAAAAAAACTCGATTT
TGCCTTTGCCAAAATACTCTTGAAAGTATTTGTTGTATTTGATCTTCTCC
TGTGTTTTTTCTTTGGCACTTCTCCTTCTTCATCTGTGGAGTAGCAGGTC
CTTTTAGTTGGTCGGTGGCGACACGAAGGATCGACGAAAGATGATGGCCC
GTCCTCCTCGTCAGTAAAATGATTACCAAAGTTTACATCGTCAGCATAGG
TTTTGGCCTGAAAAAAAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048874-exon-scaffold_147-1491911889:276617..278645 | TCONS_00048874-exon-scaffold_147-1491911889:276617..278645 | Clytia hemisphaerica | exon |
| TCONS_00048874-exon-scaffold_147-1510915933:276617..278645 | TCONS_00048874-exon-scaffold_147-1510915933:276617..278645 | Clytia hemisphaerica | exon |
| TCONS_00048874-exon-scaffold_147-1575043694:276617..278645 | TCONS_00048874-exon-scaffold_147-1575043694:276617..278645 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:276617..278645 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007527 | Znf_SWIM |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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