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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048869 ID=TCONS_00048869|Name=TCONS_00048869|organism=Clytia hemisphaerica|type=transcript|length=872bp
cacacacacacaaagattattcgtcttcagctttgtatttgtctaaatag
aattttgtagctaaagattttagttcatcagtatcaagGTTGTAAAAATC
AGCTTTGCCCCTGGTGCCagttttgtgatcaatttcatcaaaattaagtg
ttgataggacatcagatggaagattaccctgtaggtatttttgaataaat
aagatattcattactttcaccagatcaaagattttgagtaatttaagcTC
ATCAAACAGGGGAGTAGCAGAAGTTCTTGGCTCACTAAAGGTCATGAGTC
TTAGTGCAGTGTTTTTGAAGAGTAGAATCCTATGTGTGACAGTCCCCAGA
GTTGACTAGCATAGCGAACATGAGaagcaaaaattgcatgataaatgttt
agaaggaTGTGAATTGGAACATAGTGACAAAGTTTGGATATTGCCCCACT
TGCCATTCTAAATGTAGCAGCAACGAAAGAAGTATGAACCTTCCAGTTTA
GATAATTGTCAAGGTGAACACCCAAATACTTCACACTCTTACTTGGTGAT
AGAATTTTCCCGCAAAGCTTAATTCTTGGAATAAGTCCATCTGTCTCCAA
Ggggaacaaaaaataacaaactcagttttgctagcattcaaagaaatttt
gttggcatTAAGCCAGCTGACTAAAACTCTGAGATCAGCagagtttttga
aaaatctaataAATGAGATGATGAGATGAGCCAATAATCTTATCTCTAAC
GTAGTTGTCATGGGCTGATCGACATGCTTGTTtgcattcttttaaaattg
cttTGTATCTATTCCAGTCAGTATACAGTCTTGTTCGTTTAGCTTGTTTG
TAGAGACGtttctagcctggat Run BLAST on NCBI transcript from alignment at scaffold_147:220473..221344 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048869 ID=TCONS_00048869|Name=TCONS_00048869|organism=Clytia hemisphaerica|type=transcript|length=872bp|location=Sequence derived from alignment at scaffold_147:220473..221344 (Clytia hemisphaerica)
atccaggctagaaaCGTCTCTACAAACAAGCTAAACGAACAAGACTGTAT
ACTGACTGGAATAGATACAaagcaattttaaaagaatgcaAACAAGCATG
TCGATCAGCCCATGACAACTACGTTAGAGATAAGATTATTGGCTCATCTC
ATCATCTCATTtattagatttttcaaaaactctGCTGATCTCAGAGTTTT
AGTCAGCTGGCTTAatgccaacaaaatttctttgaatgctagcaaaactg
agtttgttattttttgttcccCTTGGAGACAGATGGACTTATTCCAAGAA
TTAAGCTTTGCGGGAAAATTCTATCACCAAGTAAGAGTGTGAAGTATTTG
GGTGTTCACCTTGACAATTATCTAAACTGGAAGGTTCATACTTCTTTCGT
TGCTGCTACATTTAGAATGGCAAGTGGGGCAATATCCAAACTTTGTCACT
ATGTTCCAATTCACAtccttctaaacatttatcatgcaatttttgcttCT
CATGTTCGCTATGCTAGTCAACTCTGGGGACTGTCACACATAGGATTCTA
CTCTTCAAAAACACTGCACTAAGACTCATGACCTTTAGTGAGCCAAGAAC
TTCTGCTACTCCCCTGTTTGATGAgcttaaattactcaaaatctttgatc
tggtgaaagtaatgaatatcttatttattcaaaaatacctacagggtaat
cttccatctgatgtcctatcaacacttaattttgatgaaattgatcacaa
aactGGCACCAGGGGCAAAGCTGATTTTTACAACcttgatactgatgaac
taaaatctttagctacaaaattctatttagacaaatacaaagctgaagac
gaataatctttgtgtgtgtgtg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048869-exon-scaffold_147-1491911889:220473..221344 | TCONS_00048869-exon-scaffold_147-1491911889:220473..221344 | Clytia hemisphaerica | exon |
| TCONS_00048869-exon-scaffold_147-1510915933:220473..221344 | TCONS_00048869-exon-scaffold_147-1510915933:220473..221344 | Clytia hemisphaerica | exon |
| TCONS_00048869-exon-scaffold_147-1575043694:220473..221344 | TCONS_00048869-exon-scaffold_147-1575043694:220473..221344 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:220473..221344 . |
Blast
The following BLAST results are available for this feature:
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