TCONS_00048864 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048864
Unique NameTCONS_00048864
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length702

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048864 ID=TCONS_00048864|Name=TCONS_00048864|organism=Clytia hemisphaerica|type=transcript|length=702bp
CAGGTGAATGTTGGTCAGGTCCAGAAGCAGGAGATACTTATTTCCGTAAC
GGTGAGAAATCCTATGACAATTGTATCGGTAATGATTATCAACCATGTAA
AGAAGGCGAGAAGAATTGTATTGGTATACAGTATACCAACTATGTTTTCA
AATTGGATTAATTTTACGATGGATGGCTTGATCAACTGATCCAAATGTCC
TATCGTTATCataatttatgatttattttttgaaagcaTCAAAGTAAAGG
TAAAGGTCtctcggtcggtcggtcggtatgattcaaaaataatttcttaa
aatctagaGTCGGTCTAATCGTAACTAATCTAATCTAAATCGATTTGTTA
CGTTTTGAAGCAGCTGACCTTTTCCTCTTCATTGATGAGTGCCTTTGGTG
ACATTTCCATTGTTGTATTTTAAATTCATCTAAGTTTTGTGGGATGAATT
CCAACtttttcaacttgttcagttaaaaatatatgcaaaaaacttttaaa
gtctATCCTCTAGTTTtgcaaattcaatttcattattttttttgatttcg
gGAAAAACAGGGTTGAGAGGGCCCgcagaacaataaattaattaCGTCTC
GCCTAATCCGatgaatattttattttcatttttggtgtttgaaaatagta
tattttgataatttattaatttatttataaaaagaaaatcatcaacTTTG
CT
Run BLAST on NCBI

transcript from alignment at scaffold_147:93732..94433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048864 ID=TCONS_00048864|Name=TCONS_00048864|organism=Clytia hemisphaerica|type=transcript|length=702bp|location=Sequence derived from alignment at scaffold_147:93732..94433 (Clytia hemisphaerica)
AGCAAAgttgatgattttctttttataaataaattaataaattatcaaaa
tatactattttcaaacaccaaaaatgaaaataaaatattcatCGGATTAG
GCGAGACGtaattaatttattgttctgcGGGCCCTCTCAACCCTGTTTTT
CccgaaatcaaaaaaaataatgaaattgaatttgcaAAACTAGAGGATag
actttaaaagttttttgcatatatttttaactgaacaagttgaaaaaGTT
GGAATTCATCCCACAAAACTTAGATGAATTTAAAATACAACAATGGAAAT
GTCACCAAAGGCACTCATCAATGAAGAGGAAAAGGTCAGCTGCTTCAAAA
CGTAACAAATCGATTTAGATTAGATTAGTTACGATTAGACCGACtctaga
ttttaagaaattatttttgaatcataccgaccgaccgaccgagaGACCTT
TACCTTTACTTTGAtgctttcaaaaaataaatcataaattatGATAACGA
TAGGACATTTGGATCAGTTGATCAAGCCATCCATCGTAAAATTAATCCAA
TTTGAAAACATAGTTGGTATACTGTATACCAATACAATTCTTCTCGCCTT
CTTTACATGGTTGATAATCATTACCGATACAATTGTCATAGGATTTCTCA
CCGTTACGGAAATAAGTATCTCCTGCTTCTGGACCTGACCAACATTCACC
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031051XLOC_031051Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048864-exon-scaffold_147-1491911889:93732..94433TCONS_00048864-exon-scaffold_147-1491911889:93732..94433Clytia hemisphaericaexon
TCONS_00048864-exon-scaffold_147-1510915933:93732..94433TCONS_00048864-exon-scaffold_147-1510915933:93732..94433Clytia hemisphaericaexon
TCONS_00048864-exon-scaffold_147-1575043694:93732..94433TCONS_00048864-exon-scaffold_147-1575043694:93732..94433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_147supercontigscaffold_147:93732..94433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0852764	0.346367	0.0814802	0	0	0	0.0925198	0.0968713	0	0	0.311405	0.0958539	0.434727	2.12338	0.0585477	0.0914986	0.603427	0.693957	8.06011	6.89347	5.30022	8.12513	5.78996	3.75106	0.956033	2.86629	0.491814	0.341177	0	0.103561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048864 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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