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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048863 ID=TCONS_00048863|Name=TCONS_00048863|organism=Clytia hemisphaerica|type=transcript|length=1324bp
CTATTATACTATACTATCGCTGTGTCTTTTTcacttgaaaaatgaaaaat
ggtttccaaAAAATAGATaagaaatataatgaaaaaaagcaaaaatttga
aaatgaaaatgaaaatgaaataaaaaagtgaatttaacCTCGTAAGCTTG
GGACTACTCCTCTTCAAAATGAAACCTATTTCATCAAGATTTTGTTAATC
TAATAAAACCCTTTGAGTTGAATTAGACATATTCTTTTGGTTAGTGAATA
CTATTCATTTGGAATGAAACTGAAAGTATAAAGAAATCGGTTAGTTGACA
TGtttcccagccggcacacaacctCAAAACAACGttcatgtgacattcat
aacgtccaaataacgttatttgaacgttaaaacaacgttgtgtgccagct
gggttgtcAAATTCGCCAACATATGGAGGATATACCCTGTACTAAAAAAG
TAAAAGATAAAAAGATGCTTAATTCcctgataaaatatttttataccaAG
ACTACATTTGACATTTTTATCAAAGCTCTTGATTCTGATCTTGTAaagta
tacgtttttttataagagcattcaacattccttcggatgttcttaacatg
ttcttattttgaccattttgtgaatatcttTTAGACCATTTTCCTAACAA
ATTGGTTGTCTTCGattctgcaaagccttaaaatgttcattACTTGTTCA
TAACAATTTCGTGATTGAAGTGTACTGATTCAATCTTTTTCAGATGACTC
CTacgcaaaaatttgaaaagaaatcatAAAACCAATCGAGAAAATTTAGA
GATTTTAGTCCAGCATTCAGGTCTACTTTTTCTGCAAATTTTGgacaaaa
taaatattttctaaaagttGAACGTAGACTTCATTTAATGAGCCTCAGCC
GCGCCAACATCAGTCAATCGGAAAGGGTAGCACCCCCTCCCCAAGTAAAG
TTTTTCGTgcgaaaatgaagataaaaaataataaaaaatgatatgatttc
aacttcattttcgaattttttgaaatgttacaatggCTTAAAATTAATTC
AATAATCAACTTTATTTTATCTTTCATCGCACTCGATTGCACCAAGAGca
atattgaaaaattttccgactGTCCAAATNTCAacttcatttttgaattt
tttgaaatgttacaatggCTTAAAATTAATTCAATAATCAACTTTATTTT
ATCTTTCATCGCACTCGATTGCACCAAGAGcaatattgaaaaattttccg
actGTCCAAATCTTTTGAATCAGACTTTAAtacggtacacgtttttttta
taagaacaaactatataagaaaac Run BLAST on NCBI protein sequence of TCONS_00048863-protein >TCONS_00048863-protein ID=TCONS_00048863-protein|Name=TCONS_00048863-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MKDKIKLIIELILSHCNISKNSKMKLXFGQSENFSILLLVQSSAMKDKIK
LIIELILSHCNISKNSKMKLKSYHFLLFFIFIFARKTLLGEGVLPFPID Run BLAST on NCBI transcript from alignment at scaffold_147:82327..83650 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048863 ID=TCONS_00048863|Name=TCONS_00048863|organism=Clytia hemisphaerica|type=transcript|length=1324bp|location=Sequence derived from alignment at scaffold_147:82327..83650 (Clytia hemisphaerica)
gttttcttatatagtttgttcttataaaaaaaacgtgtaccgtaTTAAAG
TCTGATTCAAAAGATTTGGACagtcggaaaatttttcaatattgCTCTTG
GTGCAATCGAGTGCGATGAAAGATAAAATAAAGTTGATTATTGAATTAAT
TTTAAGccattgtaacatttcaaaaaattcaaaaatgaagtTGANATTTG
GACagtcggaaaatttttcaatattgCTCTTGGTGCAATCGAGTGCGATG
AAAGATAAAATAAAGTTGATTATTGAATTAATTTTAAGccattgtaacat
ttcaaaaaattcgaaaatgaagttgaaatcatatcattttttattatttt
ttatcttcattttcgcACGAAAAACTTTACTTGGGGAGGGGGTGCTACCC
TTTCCGATTGACTGATGTTGGCGCGGCTGAGGCTCATTAAATGAAGTCTA
CGTTCaacttttagaaaatatttattttgtcCAAAATTTGCAGAAAAAGT
AGACCTGAATGCTGGACTAAAATCTCTAAATTTTCTCGATTGGTTTTatg
atttcttttcaaatttttgcgtAGGAGTCATCTGAAAAAGATTGAATCAG
TACACTTCAATCACGAAATTGTTATGAACAAGTaatgaacattttaaggc
tttgcagaatCGAAGACAACCAATTTGTTAGGAAAATGGTCTAAaagata
ttcacaaaatggtcaaaataagaacatgttaagaacatccgaaggaatgt
tgaatgctcttataaaaaaacgtatacttTACAAGATCAGAATCAAGAGC
TTTGATAAAAATGTCAAATGTAGTCTtggtataaaaatattttatcaggG
AATTAAGCATCTTTTTATCTTTTACTTTTTTAGTACAGGGTATATCCTCC
ATATGTTGGCGAATTTgacaacccagctggcacacaacgttgttttaacg
ttcaaataacgttatttggacgttatgaatgtcacatgaaCGTTGTTTTG
aggttgtgtgccggctgggaaaCATGTCAACTAACCGATTTCTTTATACT
TTCAGTTTCATTCCAAATGAATAGTATTCACTAACCAAAAGAATATGTCT
AATTCAACTCAAAGGGTTTTATTAGATTAACAAAATCTTGATGAAATAGG
TTTCATTTTGAAGAGGAGTAGTCCCAAGCTTACGAGgttaaattcacttt
tttatttcattttcattttcattttcaaatttttgctttttttcattata
tttcttATCTATTTTttggaaaccatttttcatttttcaagtgAAAAAGA
CACAGCGATAGTATAGTATAATAG Coding sequence (CDS) from alignment at scaffold_147:82327..83650 >TCONS_00048863 ID=TCONS_00048863|Name=TCONS_00048863|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_147:82327..83650 (Clytia hemisphaerica)
ATGAAAGATAAAATAAAGTTGATTATTGAATTAATTTTAAGccattgtaa
catttcaaaaaattcaaaaatgaagtTGANATTTGGACagtcggaaaatt
tttcaatattgCTCTTGGTGCAATCGAGTGCGATGAAAGATAAAATAAAG
TTGATTATTGAATTAATTTTAAGccattgtaacatttcaaaaaattcgaa
aatgaagttgaaatcatatcattttttattattttttatcttcattttcg
cACGAAAAACTTTACTTGGGGAGGGGGTGCTACCCTTTCCGATTGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048863-exon-scaffold_147-1491911889:82327..83650 | TCONS_00048863-exon-scaffold_147-1491911889:82327..83650 | Clytia hemisphaerica | exon |
| TCONS_00048863-exon-scaffold_147-1510915933:82327..83650 | TCONS_00048863-exon-scaffold_147-1510915933:82327..83650 | Clytia hemisphaerica | exon |
| TCONS_00048863-exon-scaffold_147-1575043694:82327..83650 | TCONS_00048863-exon-scaffold_147-1575043694:82327..83650 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:82327..83650 . |
Blast
The following BLAST results are available for this feature:
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