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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048858 ID=TCONS_00048858|Name=TCONS_00048858|organism=Clytia hemisphaerica|type=transcript|length=2123bp
CTTATCAAGAGCTGTATTGAAAATTGTTTCTAGCTGTGTCCATTGATCGT
TGATGGAAGACACATTATCAAGAGTATTGATATCCAGTTATAGTGTGTGT
CTCCCAGTCAATGTCCGGAAAGTTGAAATCACCTCCAATCCAGAggatta
gactggtcgaaattgatggacaaatgattgacaggtatgaaaactccgTC
TCTCGTCTTtctcagaaatgagaaactaagtctcagaaaatagaaaaaac
aggTAAAGCgaaagataggaaagggaaaatgggTCGTCATTTAGTGAAAT
GTAAAAACAGGTCTATTATTGGGAGTGTGTCTCAAGCAGTCCAAAATCTA
TTTCCTTCAAAGGAGAAGGGAACACTATATCATCATCTATGTTTGGAAGG
TGTTAGAAGGGATATAGTACCTAACGTTAAAATCCCCAGCTCGGCCGGCT
GTGCCAACTGTCACACAACTGTCCACCTCCAAGAATCAAACATATCCAGC
CAAGCTTTGCacgaccctgccggtgcacccgacagtcgggtgctgttgTC
GGGTGTTCGAAGTTAGAAATTTcaacacccgacagtcgggtgcactTTGT
CGGGTGCTACATCTTGGGCGCTCTTAACAACACCCGACATGTAACGGGCG
GGTGGCGATTTCCCGAGGGCGGAAAAACGGGTTCTTTTTGCTACCGCCCG
ACGCCCGGCCTGTAGTTGGGTGCGCGGCATTTTTGACGAAATACTCTAAT
TACTCTCTCAAGGCCAGTCTCCACTTCtccgcgcgctgcgatcgcatatt
ttttggcttcaatccttttggcttggaaaaaagattacgtcataaaaatg
taacgcgcactcgaaaaagtgcgatcgagaAACGCATGCAAAAGTGCAGA
CCGGCCTTTCTCGTCAAACCAATTCTTTGGTGGGTCAAACAATGTGAGTT
CGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAAcgcttttcttttc
tttttatttatggGTGATAAACGACGGTAAAACGACGAAACGacgaagac
aaataatagagaTGTTTCATCAATGATTCTTTATCAACGCAAACTTCACT
AAGTGTACCACCACCATTCTTGTACAAGTAACCATTGCGTACATACACAA
TGTTTGGATGGCTGGGGACAACGTGCGTGTTGCTCAAAAGAAGAGACTGG
AACAACCTTTTTTTATTGATTAACAATAATTTAGACCATGCTCAAACCAG
TTCAGACGTTACAGTTTCATGTCATATCGTCCCGGTATAGTTTCCGTTAG
GGATagagagtgttcatattggtttcgaaACGTtccggagcagttccgtt
ccgttccgatgaaaatagtggaacaaaaccgtttcgatctgttttgcttt
gtatgTAACGTCTTCAAATTTTGGTGTTCACACGTTCACACAGAACCGTT
TCTTTTTGGAACaatacggaaccgtaacgtctgaacgtGGTCTTacaaac
aatctttgaaatacatacaattaaaaatatgtaaaattataAATCATAAG
GCCATTTGATCATCAATAGATCCAACAATGCATTTCCTCTGTTTTCTTCC
TGAGAAGGAGATAGAAAGTAGAAAGATTAACTAATAAACTACCGCCCTCT
ATTTTAAATCTCTTGTCTATCCACAGCTTTAGTAtccattatgtctgaga
ttatAAAATCCCggtaaatattcttaaaaatatcCTTAGATTAaccaatt
tgaaaaaagtcattccTGTCTCCACGCACTTACGTACGTCGTTAGTAAAC
TTACAACTAGCTTTTAATGCAGAATCACGTATCTACACAGACCATTTAGA
ACGCCATAGAAATTACGTCATCATGAAACTAAATGTCAGATGAGATTGAG
CTATTTATATCATGATATTAAAGGTAATATACGTCTTACCTGGATAAACC
AACACGTCAGCGTGTTTTGTCATCAGAATGTAAGactaaaacgaaaaaag
aagagagaaaaagagagcGGAATGTCATGCCTCAAACCTAAACACGGATG
AGAGATAGATTGACCATCAAGTGCAGGCTCGAATTTAAGAATATCGAAAC
ACTGATATGATCAAAGTACAGAA Run BLAST on NCBI transcript from alignment at scaffold_147:216814..219473- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048858 ID=TCONS_00048858|Name=TCONS_00048858|organism=Clytia hemisphaerica|type=transcript|length=2660bp|location=Sequence derived from alignment at scaffold_147:216814..219473- (Clytia hemisphaerica)
CTTATCAAGAGCTGTATTGAAAATTGTTTCTAGCTGTGTCCATTGATCGT
TGATGGAAGACACATTATCAAGGTTCGAATCACAAAATTGTTTAACATCT
TCAGTCAGGGTTGCTTTTATATCTGGTAGGTTGGCTCTTTTCCAAAGGTA
AATTGTCCGTTTTGATGTTTTTAGTCGAGAAGGATGGCACAATGTGTCTG
CAAGAGGGATGCTTGTATGATCGCTTATGCCCGGGGTATCAACAATGTGT
GTTAAGAGTGAGTTATTGTTTTTCAATAAAATATCTAAGCAATTGTCTCC
TCTTGTTGGAAAGTTCACTAGCTGTGATAAGCCACTTTCTGTGATCCAGT
CTAGAGCTATTTTATAAATTTCTTTAGAGTATTGATATCCAGTTATAGTG
TGTGTCTCCCAGTCAATGTCCGGAAAGTTGAAATCACCTCCAATCCAGAG
GATTAGACTGGTCGAAATTGATGGACAAATGATTGACAGGTATGAAAACT
CCGTCTCTCGTCTTTCTCAGAAATGAGAAACTAAGTCTCAGAAAATAGAA
AAAACAGGTAAAGCGAAAGATAGGAAAGGGAAAATGGGTCGTCATTTAGT
GAAATGTAAAAACAGGTCTATTATTGGGAGTGTGTCTCAAGCAGTCCAAA
ATCTATTTCCTTCAAAGGAGAAGGGAACACTATATCATCATCTATGTTTG
GAAGGTGTTAGAAGGGATATAGTACCTAACGTTAAAATCCCCAGCTCGGC
CGGCTGTGCCAACTGTCACACAACTGTCCACCTCCAAGAATCAAACATAT
CCAGCCAAGCTTTGCACGACCCTGCCGGTGCACCCGACAGTCGGGTGCTG
TTGTCGGGTGTTCGAAGTTAGAAATTTCAACACCCGACAGTCGGGTGCAC
TTTGTCGGGTGCTACATCTTGGGCGCTCTTAACAACACCCGACATGTAAC
GGGCGGGTGGCGATTTCCCGAGGGCGGAAAAACGGGTTCTTTTTGCTACC
GCCCGACGCCCGGCCTGTAGTTGGGTGCGCGGCATTTTTGACGAAATACT
CTAATTACTCTCTCAAGGCCAGTCTCCACTTCTCCGCGCGCTGCGATCGC
ATATTTTTTGGCTTCAATCCTTTTGGCTTGGAAAAAAGATTACGTCATAA
AAATGTAACGCGCACTCGAAAAAGTGCGATCGAGAAACGCATGCAAAAGT
GCAGACCGGCCTTTCTCGTCAAACCAATTCTTTGGTGGGTCAAACAATGT
GAGTTCGGGCTTTGATGTTCTTGGGAGAAGTTAACGGATTAACGCTTTTC
TTTTCTTTTTATTTATGGGTGATAAACGACGGTAAAACGACGAAACGACG
AAGACAAATAATAGAGATGTTTCATCAATGATTCTTTATCAACGCAAACT
TCACTAAGGTAGGCTTTCAAAGTGCCCAGTAGAAAACTATTCTGCCCTGG
GGTATTAAAGTTATCTAGGTAGGTTTTTCCACTTTTACCTACCTGAAAAT
CGTGTTTCTTTAAATTTTTAATTAACGTTCAATTTGTCTGAGCTGAGTGA
GTAACTTTGTCAACTGGACGCTATATATTACCTGGGTTTTCGTTTTGTAA
CGACACACTATATGCCGAATTTTTTGTTCAATCTATTTAGTGTACCACCA
CCATTCTTGTACAAGTAACCATTGCGTACATACACAATGTTTGGATGGCT
GGGGACAACGTGCGTGTTGCTCAAAAGAAGAGACTGGAACAACCTTTTTT
TATTGATTAACAATAATTTAGACCATGCTCAAACCAGTTCAGACGTTACA
GTTTCATGTCATATCGTCCCGGTATAGTTTCCGTTAGGGATAGAGAGTGT
TCATATTGGTTTCGAAACGTTCCGGAGCAGTTCCGTTCCGTTCCGATGAA
AATAGTGGAACAAAACCGTTTCGATCTGTTTTGCTTTGTATGTAACGTCT
TCAAATTTTGGTGTTCACACGTTCACACAGAACCGTTTCTTTTTGGAACA
ATACGGAACCGTAACGTCTGAACGTGGTCTTACAAACAATCTTTGAAATA
CATACAATTAAAAATATGTAAAATTATAAATCATAAGGCCATTTGATCAT
CAATAGATCCAACAATGCATTTCCTCTGTTTTCTTCCTGAGAAGGAGATA
GAAAGTAGAAAGATTAACTAATAAACTACCGCCCTCTATTTTAAATCTCT
TGTCTATCCACAGCTTTAGTATCCATTATGTCTGAGATTATAAAATCCCG
GTAAATATTCTTAAAAATATCCTTAGATTAACCAATTTGAAAAAAGTCAT
TCCTGTCTCCACGCACTTACGTACGTCGTTAGTAAACTTACAACTAGCTT
TTAATGCAGAATCACGTATCTACACAGACCATTTAGAACGCCATAGAAAT
TACGTCATCATGAAACTAAATGTCAGATGAGATTGAGCTATTTATATCAT
GATATTAAAGGTAATATACGTCTTACCTGGATAAACCAACACGTCAGCGT
GTTTTGTCATCAGAATGTAAGACTAAAACGAAAAAAGAAGAGAGAAAAAG
AGAGCGGAATGTCATGCCTCAAACCTAAACACGGATGAGAGATAGATTGA
CCATCAAGTGCAGGCTCGAATTTAAGAATATCGAAACACTGATATGATCA
AAGTACAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048858-exon-scaffold_147-1575043694:219402..219473 | TCONS_00048858-exon-scaffold_147-1575043694:219402..219473 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1575043694:218066..219096 | TCONS_00048858-exon-scaffold_147-1575043694:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1575043694:216814..217833 | TCONS_00048858-exon-scaffold_147-1575043694:216814..217833 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1510915933:219402..219473 | TCONS_00048858-exon-scaffold_147-1510915933:219402..219473 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1510915933:218066..219096 | TCONS_00048858-exon-scaffold_147-1510915933:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1510915933:216814..217833 | TCONS_00048858-exon-scaffold_147-1510915933:216814..217833 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1491911889:219402..219473 | TCONS_00048858-exon-scaffold_147-1491911889:219402..219473 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1491911889:218066..219096 | TCONS_00048858-exon-scaffold_147-1491911889:218066..219096 | Clytia hemisphaerica | exon |
| TCONS_00048858-exon-scaffold_147-1491911889:216814..217833 | TCONS_00048858-exon-scaffold_147-1491911889:216814..217833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:216814..219473 - |
Blast
The following BLAST results are available for this feature:
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