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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048824 ID=TCONS_00048824|Name=TCONS_00048824|organism=Clytia hemisphaerica|type=transcript|length=1437bp
AATAAACAAACACTCGTTAAGTTCTATAGATAATCACTTCGTAAAACGTC
TGCAAAAACTTGTCGACTGTCTTATGTGTACAAAGTATGGTCTTTAGCGA
AAAAATGGATGTGCGTAATGCTTTCAACACAGCTCCACAGCAGAACAAGG
ACCAACCCTTCAAACCAGGTCAACTATCTGAGGAACAGATCAAACATTTC
TTTAATAAGGGATGGCTTATGGTACCTAACTTGATTGAACCTGAAGTTCT
CAATGGTGTTAAGGAAGGCATTGAGCGACAAATTGATGACCTGGCAGATC
GATTACACACAGCTGgtaaaattcaacataaacatgAAGATAAAGGATTT
TGCCAAAGGATTACTCATATTGAGTATGAATTCCCAGGAGCTGCTATATT
GTTACACAAATCTGGAATACTTCCTGGTGGTGCGAGAGAACTTTGGTCAC
ATGAGAAGATATTGAATATTGGTGAACAGCTTATTGGTTCTGGTGAAATT
GCTGGCCACCCTGTTTGGAATCTAAGAGTCAAGCTACCTGATTACGAGGT
TGGAGTTGTACCTTGGCATCAAGATAATTCTTACTTTGAGGATGAAAGTA
TGAAAACTATGATCCTAACCGGCTGGGTACCATTATTGGATACAGCTGAA
TTCAATGGTGGTATGCAGATGATGGATGGTACTCAATCGAGTGGGAAATT
GGCTGAACATTTTTGTTGCGCTGGTGGTACCTTTTATTTGGAGATTGAAA
AAGATGTGATCGAAGAGACTTTTGGATGTCGATTGGAGAATAAAACAGTA
TGTGAAGTACCGTATGGCGGAGTCCTGTTTTTCAGTAATATGATCGTTCA
CCGAAGTTCCACAAACAGATCAAACGATGTTAGATGGTCTATGGATTTAC
GTTGGCAAGACCCAAGACAACCTACCGGCCGTCCATCTGATGAGAAGTTA
CCATTGTTTCGAAGCCAACAGACCCCTGTTAAAGAAATCGATTGGTCTGT
TCTCACCAACCGACAACAGAATGATCGAAAAGTGTTTTTAGAATCTGAGA
AATTGGCTGAGGTGGAATTCGAAACAAGACTCGGTGGCCCGTGGATGAAA
CGGTGGCCCATCAAACATCATAATAGAATACAGATTATGAGAATAGCAAA
TTAATAATATcctgaaaataaattattttggaGCTAGGTTGTAAAATCTC
TTAAAATTCTTTTATCCTATTATCTTTAATACTTTGGCATTTTCAATTCC
TGGCTTCTATTTCTTAAACAATTACGTATATCTTCAAATACTGTTTACGA
TACTGCTGCAACACAGTGAAGCCTTGAGATgttgttaactttttgagttt
taagcctaaaaatgttcttcattttccccattttgtgggtatttttatcc
attttcctgagaaatcggatgttttagtccccgaagc Run BLAST on NCBI protein sequence of TCONS_00048824-protein >TCONS_00048824-protein ID=TCONS_00048824-protein|Name=TCONS_00048824-protein|organism=Clytia hemisphaerica|type=polypeptide|length=355bp
MVFSEKMDVRNAFNTAPQQNKDQPFKPGQLSEEQIKHFFNKGWLMVPNLI
EPEVLNGVKEGIERQIDDLADRLHTAGKIQHKHEDKGFCQRITHIEYEFP
GAAILLHKSGILPGGARELWSHEKILNIGEQLIGSGEIAGHPVWNLRVKL
PDYEVGVVPWHQDNSYFEDESMKTMILTGWVPLLDTAEFNGGMQMMDGTQ
SSGKLAEHFCCAGGTFYLEIEKDVIEETFGCRLENKTVCEVPYGGVLFFS
NMIVHRSSTNRSNDVRWSMDLRWQDPRQPTGRPSDEKLPLFRSQQTPVKE
IDWSVLTNRQQNDRKVFLESEKLAEVEFETRLGGPWMKRWPIKHHNRIQI
MRIAN Run BLAST on NCBI transcript from alignment at scaffold_147:77276..82269+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048824 ID=TCONS_00048824|Name=TCONS_00048824|organism=Clytia hemisphaerica|type=transcript|length=4994bp|location=Sequence derived from alignment at scaffold_147:77276..82269+ (Clytia hemisphaerica)
AATAAACAAACACTCGTTAAGTTCTATAGATAATCACTTCGTAAAACGTC
TGCAAAAACTTGTCGACTGTCTTATGTGTACAAAGTATGGTCTTTAGCGA
AAAAATGGATGTGCGTAATGCTTTCAACACAGCTCCACAGCAGAACAAGG
ACCAACCCTTCAAACCAGGTCAACTATCTGAGGAACAGATCAAACATTTC
TTTAATAAGGGATGGCTTATGGTACCTAACTTGATTGAACCTGAAGTTCT
CAATGGTGTTAAGGAAGGCATTGAGCGACAAATTGATGACCTGGCAGATC
GATTACACACAGCTGgtaaaattcaacataaacatgAAGATAAAGGATTT
TGCCAAAGGATTACTCATATTGAGTATGAATTCCCAGGAGCTGCTATATT
GTTACACAAATCTGGAATACTTCCTGGTGGTGCGAGAGAACTTTGGTCAC
ATGAGAAGATATTGAATATTGGTGAACAGCTTATTGGTTCTGGTGAAATT
GCTGGCCACCCTGTTTGGAATCTAAGAGTCAAGCTACCTGATTACGAGGT
TGGAGTTGTACCTTGGCATCAAGATAATTCTTACTTTGAGGATGAAAGTA
TGAAAACTATGATCCTAACCGGCTGGGTACCATTATTGGATACAGCTGAA
TTCAATGGTGGTATGCAGATGATGGATGGTACTCAATCGAGTGGGAAATT
GGCTGAACATTTTTGTTGCGCTGGTGGTACCTTTTATTTGGAGATTGAAA
AAGATGTGATCGAAGAGACTTTTGGATGTCGATTGGAGAATAAAACAGTA
TGTGAAGTACCGTATGGCGGAGTCCTGTTTTTCAGTAATATGATCGTTCA
CCGAAGTTCCACAAACAGGTCAGTAGATTATAAATCCTTGCTTATCTGAG
CATCGATTAATCGAAACTTTGAATAATTCGAACAGATTCTTAGGCCCTTT
CAAACACcccattctcacagacccacttgaaaaattgaccaaaatagaTA
CCGTCCCcaatgaaaaattataattcAACTTTTGTTCCCACTAAAGATAA
TCAAATCAACCAATaatccccactgcaaaataATTAGCTATTTTTCTGAA
TtctctgacttgaaaacaaggCAATTTAAATTCcccataaaaaatataaa
aacgtcgatccccattgagtttcagtccattatttttactcccactgact
gaaaaaatctttcctgGTCTGTGAGAATGGGGTGTGTTCAAGGTGAAGCA
CctgtacacccctgtgtcacagacccgctaggCCCCCAGGCCTACTAGAA
AACTTGGCAAACatttcgtccccggtagaaaaaataccctagaatttcag
ccccactgagaaatcGACTTTAATTTTGTCTCCACtcgaaattcattgtt
ttgaaatttcactccaaaactattcccactggattttttagccTTGTAAC
AATGTAATTTTTATCCCTATTGAGATTGaaaggaaaaagtttcaccgggg
ctgtgagacaggagtgtacTCTTAAAGTGCTTTTTAAGGATCTTACTgta
atcaaagaaaatattttttccaattcCAGTTCAAATGAACTTTCGAACTT
TTCTTATTACTCCGCGAATTTCGGCTTTTGAAAACATGTACACTGAAGAG
ATAGATCGTAACAAGAGCTTTCCAGTACAACCCAAATTTAACCAGTTTTG
TAATATTGTGATAATTTAAGGAAGGGATGGTGCAATTTATGTAGAAATGA
ATGAATTAAAAGCTTACCTAAAATAACCATTTAGCTGGTTTTAAGTCANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNGAATGTGGGTAACTTGTGGTAGCTTGGATGC
TTTTTTGGCGTTATCTGTTCTATGATCGTCACGTTGTTTTCTGTCAGCTG
CGTCCAGTTACCATCGGTTgtcctgaaaaaaggaaaagagaGAACGACAA
AGAAACTTCGATTTTTGTAACCCTGATCTTAATTGAAGCAAGGACAAAAA
ATATCTTACGTAttttacaaacaaaaaacaaatctgACGAAACATGATGT
TTTAAGTCATTCGAGTAAAAGGATAACCCGCCAGAAGGCTGGCAAGCACA
ACAAAATTAGCTCCCGTCATAAGGCTAGCAAGCACTGAATTACGTTTact
caaatagaaaaaaaattgatgattatTTTATTTGTATAAGTTTTAGGTCA
TTCGAGTAAAAGGTTAACGTGCCAGAAGGCTGACAAGCACAACAAAATTA
GCACCCGCCATAAGGCTAGCAAGCACTGAATTACATTTActcaaatggaa
aaaattggatgATTTTATTTGTATAAGNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNGTGTACTTGGTTCTCAAACATGAATATATATTAAAACA
TTTCAAGACATGTTTAGGGATATTTATCAACAGATTATATGAAACAAACA
AATTCTTAGACCAATTAATGTTTTTCACAAGAAAAGAATATTTACCTTAC
ACGTATTTATTGATCGATATTGCAGATCAAACGATGTTAGATGGTCTATG
GATTTACGTTGGCAAGACCCAAGACAACCTACCGGCCGTCCATCTGATGA
GAAGTTACCATTGTTTCGAAGCCAACAGACCCCTGTTAAAGAAATCGATT
GGTCTGTTCTCACCAACCGACAACAGAATGATCGAAAAGTGTTTTTAGAA
TCTGAGAAATTGGCTGAGGTGGAATTCGAAACAAGACTCGGTGGCCCGTG
GATGAAACGGTGGCCCATCAAACATCATAATAGAATACAGATTATGAGAA
TAGCAAATTAATAATATcctgaaaataaattattttggaGCTAGGTTGTA
AAATCTCTTAAAATTCTTTTATCCTATTATCTTTAATACTTTGGCATTTT
CAATTCCTGGCTTCTATTTCTTAAACAATTACGTATATCTTCAAATACTG
TTTACGATACTGCTGCAACACAGTGAAGCCTTGAGATgttgttaactttt
tgagttttaagcctaaaaatgttcttcattttccccattttgtgggtatt
tttatccattttcctgagaaatcggatgttttagtccccgaagc Coding sequence (CDS) from alignment at scaffold_147:77276..82269+ >TCONS_00048824 ID=TCONS_00048824|Name=TCONS_00048824|organism=Clytia hemisphaerica|type=CDS|length=2136bp|location=Sequence derived from alignment at scaffold_147:77276..82269+ (Clytia hemisphaerica)
ATGGTCTTTAGCGAAAAAATGGATGTGCGTAATGCTTTCAACACAGCTCC
ACAGCAGAACAAGGACCAACCCTTCAAACCAGGTCAACTATCTGAGGAAC
AGATCAAACATTTCTTTAATAAGGGATGGCTTATGGTACCTAACTTGATT
GAACCTGAAGTTCTCAATGGTGTTAAGGAAGGCATTGAGCGACAAATTGA
TGACCTGGCAGATCGATTACACACAGCTGgtaaaattcaacataaacatg
AAGATAAAGGATTTTGCCAAAGGATTACTCATATTGAGTATGAATTCCCA
GGAGCTGCTATATTGTTACACAAATCTGGAATACTTCCTGGTGGTGCGAG
AGAACTTTGGTCACATGAGAAGATATTGAATATTGGTGAACAGCTTATTG
GTTCTGGTGAAATTGCTGGCCACCCTGTTTGGAATCTAAGAGTCAAGCTA
CCTGATTACGAGGTTGGAGTTGTACCTTGGCATCAAGATAATTCTTACTT
TGAGGATGAAAGTATGAAAACTATGATCCTAACCGGCTGGGTACCATTAT
TGGATACAGCTGAATTCAATGGTGGTATGCAGATGATGGATGGTACTCAA
TCGAGTGGGAAATTGGCTGAACATTTTTGTTGCGCTGGTGGTACCTTTTA
TTTGGAGATTGAAAAAGATGTGATCGAAGAGACTTTTGGATGTCGATTGG
AGAATAAAACAGTATGTGAAGTACCGTATGGCGGAGTCCTGTTTTTCAGT
AATATGATCGTTCACCGAAGTTCCACAAACAGATCAAACGATGTTAGATG
GTCTATGGATTTACGTTGGCAAGACCCAAGACAACCTACCGGCCGTCCAT
CTGATGAGAAGTTACCATTGTTTCGAAGCCAACAGACCCCTGTTAAAGAA
ATCGATTGGTCTGTTCTCACCAACCGACAACAGAATGATCGAAAAGTGTT
TTTAGAATCTGAGAAATTGGCTGAGGTGGAATTCGAAACAAGACTCGGTG
GCCCGTGGATGAAACGGTGGCCCATCAAACATCATAATAGAATACAGATT
ATGAGAATAGCAAATTAAATGGTCTTTAGCGAAAAAATGGATGTGCGTAA
TGCTTTCAACACAGCTCCACAGCAGAACAAGGACCAACCCTTCAAACCAG
GTCAACTATCTGAGGAACAGATCAAACATTTCTTTAATAAGGGATGGCTT
ATGGTACCTAACTTGATTGAACCTGAAGTTCTCAATGGTGTTAAGGAAGG
CATTGAGCGACAAATTGATGACCTGGCAGATCGATTACACACAGCTGgta
aaattcaacataaacatgAAGATAAAGGATTTTGCCAAAGGATTACTCAT
ATTGAGTATGAATTCCCAGGAGCTGCTATATTGTTACACAAATCTGGAAT
ACTTCCTGGTGGTGCGAGAGAACTTTGGTCACATGAGAAGATATTGAATA
TTGGTGAACAGCTTATTGGTTCTGGTGAAATTGCTGGCCACCCTGTTTGG
AATCTAAGAGTCAAGCTACCTGATTACGAGGTTGGAGTTGTACCTTGGCA
TCAAGATAATTCTTACTTTGAGGATGAAAGTATGAAAACTATGATCCTAA
CCGGCTGGGTACCATTATTGGATACAGCTGAATTCAATGGTGGTATGCAG
ATGATGGATGGTACTCAATCGAGTGGGAAATTGGCTGAACATTTTTGTTG
CGCTGGTGGTACCTTTTATTTGGAGATTGAAAAAGATGTGATCGAAGAGA
CTTTTGGATGTCGATTGGAGAATAAAACAGTATGTGAAGTACCGTATGGC
GGAGTCCTGTTTTTCAGTAATATGATCGTTCACCGAAGTTCCACAAACAG
ATCAAACGATGTTAGATGGTCTATGGATTTACGTTGGCAAGACCCAAGAC
AACCTACCGGCCGTCCATCTGATGAGAAGTTACCATTGTTTCGAAGCCAA
CAGACCCCTGTTAAAGAAATCGATTGGTCTGTTCTCACCAACCGACAACA
GAATGATCGAAAAGTGTTTTTAGAATCTGAGAAATTGGCTGAGGTGGAAT
TCGAAACAAGACTCGGTGGCCCGTGGATGAAACGGTGGCCCATCAAACAT
CATAATAGAATACAGATTATGAGAATAGCAAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048824-exon-scaffold_147-1491911889:77276..78143 | TCONS_00048824-exon-scaffold_147-1491911889:77276..78143 | Clytia hemisphaerica | exon |
| TCONS_00048824-exon-scaffold_147-1510915933:77276..78143 | TCONS_00048824-exon-scaffold_147-1510915933:77276..78143 | Clytia hemisphaerica | exon |
| TCONS_00048824-exon-scaffold_147-1575043694:77276..78143 | TCONS_00048824-exon-scaffold_147-1575043694:77276..78143 | Clytia hemisphaerica | exon |
| TCONS_00048824-exon-scaffold_147-1491911889:81701..82269 | TCONS_00048824-exon-scaffold_147-1491911889:81701..82269 | Clytia hemisphaerica | exon |
| TCONS_00048824-exon-scaffold_147-1510915933:81701..82269 | TCONS_00048824-exon-scaffold_147-1510915933:81701..82269 | Clytia hemisphaerica | exon |
| TCONS_00048824-exon-scaffold_147-1575043694:81701..82269 | TCONS_00048824-exon-scaffold_147-1575043694:81701..82269 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_147 | supercontig | scaffold_147:77276..82269 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008775 | Phytyl_CoA_dOase |
Blast
The following BLAST results are available for this feature:
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