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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048794 ID=TCONS_00048794|Name=TCONS_00048794|organism=Clytia hemisphaerica|type=transcript|length=1720bp
atttaattgaaaaatcATTCCCTTCTTTATCACATGTCTTATAAGATGAA
TATTTACATGCCGTATGTTCACCGAATTTTTCCCTGATACACATGTGAAA
ATATAGAATGTGCTATTCAccacaaaaagttgttttttggtAATTGATAA
TTTCCCTGGTTATTGTTGTGGTCTGGTCAAGCATAAAAGACATATTGAGA
TGGTGAAAGAAATTGAACATGTTCCTGTAATTTTATGAAAGTGAATCGAA
GCATCAACGCCAGTGATGAAAATTTGGTTCAGCTGCAAATAGCCATCCAA
TCGTTTTTTACAGTCATTTTCTACTAAGTTGTTTTTACTCCTTTTCTATT
GTCGTCATCGTTTTTTGGCTGCTGTTGCTGTTGCTCGTTGGCTGTTATTT
CTTTATCGACAATCGCCAAGTCAACGTAAGAGCATTTCTCTCTACTATAC
TTTACTATTATTCCACTATTCATAAACTCCTTCCTTTTGATAATAATCCA
TTCAGGGGGCATTCGTCATTCttatatataataaaatatttcttgactCA
GATCTAAGGCCTGATGATGCAGTGGATGGATAACTCCCACATATCGGAAT
ACGGGGGTCTAAGGTTCAAAACCGGCTCAAGTACTATTTCACAACGCAGC
TAACTTATTTGATCTTCACCATTTATGTCTCTTTGACACATTTTCAATGA
CCTTTCTAGTCCACACAGGCTAAAGCAATGACAATCATCATCATATACAA
ATCTGAATTAATAAAATCAATTCTTGATTTAACATCTTTGATGCATGTCA
TCCAACCTGTCAATCAATTAGCAAATCAATCAAGTAGCCAATCAATCAAG
TAGCAAATGGTGTGCCAaccaaatattgaaaataggttttatcTTTAAAG
CTTCTTTTAAATTAGTTATGTACAAGACTCATTAAATTCCCAAATACTTA
TCATATTTCTGTGGTACACTGTAGCAACATTTTTAAAACCTATAAAAACC
ACTACACGCAGCTACATGTATCTTCTTTATCTTTTTTACAGACGTAAAAG
TTACAAGAATGGCATTATGGAATTAGTGAGATTGACATAGAGATGGAAGC
CCAACAAAATTTAGAGGTAGAGGAAGATTTGGGGGTCACTATCTCAAAAT
TGAAGGTTCAATTAGCAAAAGTTAAAGAAGCATtggagaaagaaaagaaa
gaaatgcCAAAAAAAGAAGGAAGATTAAAAAGCTGAAAGGTGAGAGCAAG
GAGGAGGGAGTTAAAGGGGAAAGAAGATAAACATGTTAATAAAATGCTAA
AACTCAGCATGTGGGTTTTTTTGAGTAGACGTTGAACGTATAGGAAAGTC
AGAAGCAACTTTTTCAGATTCAGTCCCAGCTTTATAATAAAAGAAGttcc
attttcttttcttttttcagttcaaaAATGTCAACACAACAAGTTACCGA
CCCTCAAATGCTATCGTTAATGTCTCAGTTACAGAAAATAATACAATATT
GAaagaagtatcaaaacaaaagaagtaTCTCAACTCTGAACAATAATGGC
TGAAGATTTGGAAAGACAAACTGCTGAAGCGGCTATCCAGcaacaaatac
aaagaaagaaaGGTTCTCTCTGACGATGAGCCTTTTTTATTTAGTTAATT
TCTCAGTGATATAGATATAGGcactgccacccaaatctcctgggTGAATA
TAGTtagacagaaattctta Run BLAST on NCBI transcript from alignment at scaffold_146:109499..111218 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048794 ID=TCONS_00048794|Name=TCONS_00048794|organism=Clytia hemisphaerica|type=transcript|length=1720bp|location=Sequence derived from alignment at scaffold_146:109499..111218 (Clytia hemisphaerica)
taagaatttctgtctaACTATATTCAcccaggagatttgggtggcagtgC
CTATATCTATATCACTGAGAAATTAACTAAATAAAAAAGGCTCATCGTCA
GAGAGAACCtttctttctttgtatttgttgCTGGATAGCCGCTTCAGCAG
TTTGTCTTTCCAAATCTTCAGCCATTATTGTTCAGAGTTGAGAtacttct
tttgttttgatacttcttTCAATATTGTATTATTTTCTGTAACTGAGACA
TTAACGATAGCATTTGAGGGTCGGTAACTTGTTGTGTTGACATTtttgaa
ctgaaaaaagaaaagaaaatggaaCTTCTTTTATTATAAAGCTGGGACTG
AATCTGAAAAAGTTGCTTCTGACTTTCCTATACGTTCAACGTCTACTCAA
AAAAACCCACATGCTGAGTTTTAGCATTTTATTAACATGTTTATCTTCTT
TCCCCTTTAACTCCCTCCTCCTTGCTCTCACCTTTCAGCTTTTTAATCTT
CCTTCTTTTTTTGgcatttctttcttttctttctccaATGCTTCTTTAAC
TTTTGCTAATTGAACCTTCAATTTTGAGATAGTGACCCCCAAATCTTCCT
CTACCTCTAAATTTTGTTGGGCTTCCATCTCTATGTCAATCTCACTAATT
CCATAATGCCATTCTTGTAACTTTTACGTCTGTAAAAAAGATAAAGAAGA
TACATGTAGCTGCGTGTAGTGGTTTTTATAGGTTTTAAAAATGTTGCTAC
AGTGTACCACAGAAATATGATAAGTATTTGGGAATTTAATGAGTCTTGTA
CATAACTAATTTAAAAGAAGCTTTAAAgataaaacctattttcaatattt
ggtTGGCACACCATTTGCTACTTGATTGATTGGCTACTTGATTGATTTGC
TAATTGATTGACAGGTTGGATGACATGCATCAAAGATGTTAAATCAAGAA
TTGATTTTATTAATTCAGATTTGTATATGATGATGATTGTCATTGCTTTA
GCCTGTGTGGACTAGAAAGGTCATTGAAAATGTGTCAAAGAGACATAAAT
GGTGAAGATCAAATAAGTTAGCTGCGTTGTGAAATAGTACTTGAGCCGGT
TTTGAACCTTAGACCCCCGTATTCCGATATGTGGGAGTTATCCATCCACT
GCATCATCAGGCCTTAGATCTGagtcaagaaatattttattatatataaG
AATGACGAATGCCCCCTGAATGGATTATTATCAAAAGGAAGGAGTTTATG
AATAGTGGAATAATAGTAAAGTATAGTAGAGAGAAATGCTCTTACGTTGA
CTTGGCGATTGTCGATAAAGAAATAACAGCCAACGAGCAACAGCAACAGC
AGCCAAAAAACGATGACGACAATAGAAAAGGAGTAAAAACAACTTAGTAG
AAAATGACTGTAAAAAACGATTGGATGGCTATTTGCAGCTGAACCAAATT
TTCATCACTGGCGTTGATGCTTCGATTCACTTTCATAAAATTACAGGAAC
ATGTTCAATTTCTTTCACCATCTCAATATGTCTTTTATGCTTGACCAGAC
CACAACAATAACCAGGGAAATTATCAATTaccaaaaaacaactttttgtg
gTGAATAGCACATTCTATATTTTCACATGTGTATCAGGGAAAAATTCGGT
GAACATACGGCATGTAAATATTCATCTTATAAGACATGTGATAAAGAAGG
GAATgatttttcaattaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048794-exon-scaffold_146-1491911889:109499..111218 | TCONS_00048794-exon-scaffold_146-1491911889:109499..111218 | Clytia hemisphaerica | exon |
| TCONS_00048794-exon-scaffold_146-1510915933:109499..111218 | TCONS_00048794-exon-scaffold_146-1510915933:109499..111218 | Clytia hemisphaerica | exon |
| TCONS_00048794-exon-scaffold_146-1575043694:109499..111218 | TCONS_00048794-exon-scaffold_146-1575043694:109499..111218 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:109499..111218 . |
Blast
The following BLAST results are available for this feature:
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