TCONS_00048789 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048789
Unique NameTCONS_00048789
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4026

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048789 ID=TCONS_00048789|Name=TCONS_00048789|organism=Clytia hemisphaerica|type=transcript|length=4026bp
ATTTTTTGTGCTgtggtttgtttttttgtttttttgctttttgtgttttc
ttttgtcaaatttcaataatattttgacCTCAGGAAAATCATTGTATCAT
TTTAGGAATAATCTATAAAAGATatactttcttcttttcaaaaaaaaaaa
ctaaaaaggaaGATGAAAGAAAGGCCCTTATAGATTTTACACTCTAGGCA
GTACATACCTGTACCCTTCACTTCGACTTCACTTGCAGGTATCCCCCATG
ACCTGCTTGAATGATAGGAATCTGGGACATTTTTTACAACTGGATAAAAA
CACAAATTACTGTATGAGAACGATCCCAAATATTGTCGATATTGAGCCGA
GGGAGCCGAGGTTATCATGACAGTCTATCTAGGCCCTTTAAGCGTTAAGT
TATCGGACGCTGCTCCTCCTGAAATTACTATAATATATTTGTAAAAACAG
CGTTATTTAGTGGCAAAACActagaaaaagtgccctttttggccaccaac
ggacgctgccttgcctttctTAAATATGGCCTGCTATCCCAGCGATTACT
GGTAGTATTATAAGTCGCTCTGGCGCAATTTGGCAGACTTGATTGTTTGG
CTgtgcttgaggtggtagcaaatcTATGCCACTAAATCATGTGACCTTTT
GgcgaaaaacaaacagaaaactatGACCAAGGGATCATTGTTTTCAAAGT
TTGGAGGTAAACGCAAGTAAAAAAAATCACTATGGCAGAATCCTATTTCG
CTGAACTAAGCGCCATCAAAATCACCAGAAAGCAAAGTCCAAGTCAGAAG
TTGCGACTCTTAGTCTAGTGAGAATAGAGCCGGGAAACTGATAAAAAAGT
TGCAAGATCAAACATAAAGAAACGAGAACAGATAGAACAAAATTGAACGA
CACTAAAACGGCAAATGAACTGAAACGATAGCTCAGAGTAAAGTTACAAA
ATAATCATTGTGGAACCTTAAATCAGAATGCGCGGCGGGTACCAGATCAG
ACAGAGGAGGCGAAATGGAAATCAGAGTAAATTCTTACTTGCTGCTGAGG
CCCTTTGCTCCTCATTCATGACGGGGAGGTCTAACCATTGCAACATATTT
GAGCTTATCAAAGGTGTCATTATTCTTCTCTTGACGACCTCAGATTTAAG
ATTCGATCTTTTCGTTTCAGCCGACATCCAGCGAAACTCATGCGACATCG
TCTGGTATGATACCAAGGATGAAGGCGTCCAGTGATCGAGACAGTGTGGG
ATCAACAACACCAACGTCTTCACTGGGCAGATGAGGATACAAGCAAGGAA
AACCAAAAGCCGGCAGAAAGGATACAAGGGAGGAAGGCGTCCAGTGATCG
AGACAGTGTGCGATCACCAACACCAACGTCTTCACTGGGCAGATGAGGAT
ACAAGCGAGGAAAACCAAAAGCCGTCAAAAACCTGACGAGGCCTGGGCAG
ATGAGGATACAAGGGAGGAAGGCGTCCAGTGGTCGAGACAGTGTGGGATC
ACCAACTCCAAAGTCTTCACTGGGCAGATGAGGATACAAGCGAGGAGCTG
GTAACAACATCTTCGTTATTATTGAATGTGGATTAACGATGGCAAATGAC
GTTTCCAATCAATTGGAGATGTACATTCTTAATTACTAAGAGGCTTCTTT
TTCATTCGAGTATCAAGAACTAAGCCAAGTATAATTTAAGAACCGGTCTC
CATGAAAAGTACAAGCAATCTGACTTAACGGGTGTGTATTATTTATTCAT
GTTACACTCTTTTTTGGACTAGGGAGTACTGTGTCCTCTGCATCATTCAC
ACCTTGTAAGGAAATTACACTTGATAATTATGAGTAATCAGAAGGTCTAT
TAGTGGGGAAAACATCCTCTACATtacccgatgatgggagaagaatctct
cgaaacgtagccaaacgtaaatttcgtgatccaagccacgataaacttcc
aatatgaatatcactggaCCGATAAACTTATTTAGATGAACTACACACCT
CAAccaaaatttttgcatttttgtggAACCTTTTAGTATTGCTGGGTAAT
AATTGGTAATTTAATggtaaatgctttaaaaaaggCATTCAGTTTCTCAC
CATATATTCTTATACAATAAGCGTGTATGTTAAtcattagattttttaat
ttttttgatgaataaaATGGCTAATAGCGGAAGGAACCTGGAAGATTTTC
TTAATGAAATGAATTGTTATTCGAGCATTCTAAAAAGGCATCGACAGAGC
AAATCAAGAAAGAGATAGAAAACTTGTTGCAGTATGCACGCATACACATT
CAAAAAATAGCAAGACATAGATCTTTTATCGAAAGGATAGTGATAAGAGC
CGAAAACCTTGCTGATGAGCTTCACGAGGAAGGCCATCTCCTTCCTAATG
AAGCAGTGATTGAAATATTGAACAGTATGTGTGTGACTGTATTTGATATC
TCTGCAAATAATAAAAAGTCGAACCCAAATGACACCGAGATTGAGTTCTA
TTGCATTAACATTCTACATTCTCTGGTTAAAACCAGGAAGTTCTTCATGT
TCCCGAATCTTCCCATTACACATTTAGAAGATTCAATTGTAAAAAATTGT
CTTATGTTTGTTTTGGCCTCTGCGTTTTAGTAGAGGCCTCTATTCACCTT
GTGTTCATGCAGGTTTAAGCGATGAACAAATATACCTCCACTTTCTCAAT
GATTTTGCCTGAATGTCATTGGTCAACTGATCGTGAATGGATTATCCCCG
ATGGTGGTGGCCATTTACTTGACCACGAGATTGTTTGGTTACAGGAGCCT
GTATTCAAAATACCAGACTTCAAGAAGATAGACCTAgacaaaatcttcaa
agaagtGACAAATGAAAACTTCAAAAGTGCAGTTGAGACGAATCAGTTGG
AGGAATGGGCAACCTGAGATTTGAGCTGAAGCCGATCGAAATTGGCCTTT
GACACTATTGATGAAGCAGCCTGAGGAAAGTCAGCAGGAAACCGGAAAAT
CTAGAAAGATGAAATACCTAGAATCTCTCCAACAGAAAGAACAAACACTA
GAAAAGAAGGTAATGcatgcaacaacaacaacaggaGAGACCACCGACGT
CGAATCTACCGACGAAGAATCCAGCGACAAAGAACCCATAAACGTCAAAT
CTACTGATGACGAGCACAGTGATAACGAAACTATGACGGACATTTTGTAC
GACAGTTATCCGTCCAAGGGTTCGTCAAAAGTCGTCTTTAACATGCTTCT
TCTTTATTATAAGTTTTCATGTAACTTAAGACATCTTATTTTCACAGTGA
AAAGTAATATCGTAAAATATAATTTCCTTTCCTAGCTGCGAAGGTCTGCT
AGAATATGCTCAAAACAGGCACCGACCTTGAAAAAAAACAGCGCGTCAAT
ATTCATATGCGACGTTTGTATAACGCGGAATACGCCAGAACAACCCAGAA
CAACCCAGAACAAGCCGGAACAACCCAGAACAACCCATAACAAGCCAGAA
CAACCTGCGTGCTGACCCTGGTAGTCTGATTTCAAGTATTCCAGTCATTT
GAGGGGATGCAATGGTCCAGTTCGGACCGCAACTCTCCCTCTTAAAATTC
CATACCTTTgcaccgcgaaaattagtcgcACGGGGTTATGTGTGACGTCA
CATGTGACAGGTTTatgtttttatgacgtcatatgaAGTGCCATAATTCT
GaattttcgggtgtttccgagtACCGGTACACCTTAAGCagttaagggaa
ctaatttttgcggttttgttGACAACCATTTTTTGCCGAATTTGGACGGC
CAAATCCATTTTTTTAATTAGACGGAAATGTGACGTTCTTTAGTGACGTA
TTTGTCGTTTATTGGGTCACtaccagttagggtcagggttggactcGAGA
GTCATAACTGAGTGCCCTGGACCCATTTAGAGTCACTTTAGGGTCAATTG
GACCCactgacaaaattgaaaaactttgttttaTGTAAGATTTTAGAGTG
GGCTGGTTTTGGAACTTCCACTGCct
Run BLAST on NCBI

protein sequence of TCONS_00048789-protein

>TCONS_00048789-protein ID=TCONS_00048789-protein|Name=TCONS_00048789-protein|organism=Clytia hemisphaerica|type=polypeptide|length=124bp
MKQPEESQQETGKSRKMKYLESLQQKEQTLEKKVMHATTTTGETTDVEST
DEESSDKEPINVKSTDDEHSDNETMTDILYDSYPSKGSSKVVFNMLLLYY
KFSCNLRHLIFTVKSNIVKYNFLS
Run BLAST on NCBI

transcript from alignment at scaffold_146:91121..95146

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048789 ID=TCONS_00048789|Name=TCONS_00048789|organism=Clytia hemisphaerica|type=transcript|length=4026bp|location=Sequence derived from alignment at scaffold_146:91121..95146 (Clytia hemisphaerica)
agGCAGTGGAAGTTCCAAAACCAGCCCACTCTAAAATCTTACAtaaaaca
aagtttttcaattttgtcagtGGGTCCAATTGACCCTAAAGTGACTCTAA
ATGGGTCCAGGGCACTCAGTTATGACTCTCgagtccaaccctgaccctaa
ctggtaGTGACCCAATAAACGACAAATACGTCACTAAAGAACGTCACATT
TCCGTCTAATTAAAAAAATGGATTTGGCCGTCCAAATTCGGCAAAAAATG
GTTGTCaacaaaaccgcaaaaattagttcccttaactGCTTAAGGTGTAC
CGGTactcggaaacacccgaaaattCAGAATTATGGCACTtcatatgacg
tcataaaaacatAAACCTGTCACATGTGACGTCACACATAACCCCGTgcg
actaattttcgcggtgcAAAGGTATGGAATTTTAAGAGGGAGAGTTGCGG
TCCGAACTGGACCATTGCATCCCCTCAAATGACTGGAATACTTGAAATCA
GACTACCAGGGTCAGCACGCAGGTTGTTCTGGCTTGTTATGGGTTGTTCT
GGGTTGTTCCGGCTTGTTCTGGGTTGTTCTGGGTTGTTCTGGCGTATTCC
GCGTTATACAAACGTCGCATATGAATATTGACGCGCTGTTTTTTTTCAAG
GTCGGTGCCTGTTTTGAGCATATTCTAGCAGACCTTCGCAGCTAGGAAAG
GAAATTATATTTTACGATATTACTTTTCACTGTGAAAATAAGATGTCTTA
AGTTACATGAAAACTTATAATAAAGAAGAAGCATGTTAAAGACGACTTTT
GACGAACCCTTGGACGGATAACTGTCGTACAAAATGTCCGTCATAGTTTC
GTTATCACTGTGCTCGTCATCAGTAGATTTGACGTTTATGGGTTCTTTGT
CGCTGGATTCTTCGTCGGTAGATTCGACGTCGGTGGTCTCtcctgttgtt
gttgttgcatgCATTACCTTCTTTTCTAGTGTTTGTTCTTTCTGTTGGAG
AGATTCTAGGTATTTCATCTTTCTAGATTTTCCGGTTTCCTGCTGACTTT
CCTCAGGCTGCTTCATCAATAGTGTCAAAGGCCAATTTCGATCGGCTTCA
GCTCAAATCTCAGGTTGCCCATTCCTCCAACTGATTCGTCTCAACTGCAC
TTTTGAAGTTTTCATTTGTCacttctttgaagattttgtcTAGGTCTATC
TTCTTGAAGTCTGGTATTTTGAATACAGGCTCCTGTAACCAAACAATCTC
GTGGTCAAGTAAATGGCCACCACCATCGGGGATAATCCATTCACGATCAG
TTGACCAATGACATTCAGGCAAAATCATTGAGAAAGTGGAGGTATATTTG
TTCATCGCTTAAACCTGCATGAACACAAGGTGAATAGAGGCCTCTACTAA
AACGCAGAGGCCAAAACAAACATAAGACAATTTTTTACAATTGAATCTTC
TAAATGTGTAATGGGAAGATTCGGGAACATGAAGAACTTCCTGGTTTTAA
CCAGAGAATGTAGAATGTTAATGCAATAGAACTCAATCTCGGTGTCATTT
GGGTTCGACTTTTTATTATTTGCAGAGATATCAAATACAGTCACACACAT
ACTGTTCAATATTTCAATCACTGCTTCATTAGGAAGGAGATGGCCTTCCT
CGTGAAGCTCATCAGCAAGGTTTTCGGCTCTTATCACTATCCTTTCGATA
AAAGATCTATGTCTTGCTATTTTTTGAATGTGTATGCGTGCATACTGCAA
CAAGTTTTCTATCTCTTTCTTGATTTGCTCTGTCGATGCCTTTTTAGAAT
GCTCGAATAACAATTCATTTCATTAAGAAAATCTTCCAGGTTCCTTCCGC
TATTAGCCATtttattcatcaaaaaaattaaaaaatctaatgaTTAACAT
ACACGCTTATTGTATAAGAATATATGGTGAGAAACTGAATGcctttttta
aagcatttaccATTAAATTACCAATTATTACCCAGCAATACTAAAAGGTT
ccacaaaaatgcaaaaattttggTTGAGGTGTGTAGTTCATCTAAATAAG
TTTATCGGtccagtgatattcatattggaagtttatcgtggcttggatca
cgaaatttacgtttggctacgtttcgagagattcttctcccatcatcggg
taATGTAGAGGATGTTTTCCCCACTAATAGACCTTCTGATTACTCATAAT
TATCAAGTGTAATTTCCTTACAAGGTGTGAATGATGCAGAGGACACAGTA
CTCCCTAGTCCAAAAAAGAGTGTAACATGAATAAATAATACACACCCGTT
AAGTCAGATTGCTTGTACTTTTCATGGAGACCGGTTCTTAAATTATACTT
GGCTTAGTTCTTGATACTCGAATGAAAAAGAAGCCTCTTAGTAATTAAGA
ATGTACATCTCCAATTGATTGGAAACGTCATTTGCCATCGTTAATCCACA
TTCAATAATAACGAAGATGTTGTTACCAGCTCCTCGCTTGTATCCTCATC
TGCCCAGTGAAGACTTTGGAGTTGGTGATCCCACACTGTCTCGACCACTG
GACGCCTTCCTCCCTTGTATCCTCATCTGCCCAGGCCTCGTCAGGTTTTT
GACGGCTTTTGGTTTTCCTCGCTTGTATCCTCATCTGCCCAGTGAAGACG
TTGGTGTTGGTGATCGCACACTGTCTCGATCACTGGACGCCTTCCTCCCT
TGTATCCTTTCTGCCGGCTTTTGGTTTTCCTTGCTTGTATCCTCATCTGC
CCAGTGAAGACGTTGGTGTTGTTGATCCCACACTGTCTCGATCACTGGAC
GCCTTCATCCTTGGTATCATACCAGACGATGTCGCATGAGTTTCGCTGGA
TGTCGGCTGAAACGAAAAGATCGAATCTTAAATCTGAGGTCGTCAAGAGA
AGAATAATGACACCTTTGATAAGCTCAAATATGTTGCAATGGTTAGACCT
CCCCGTCATGAATGAGGAGCAAAGGGCCTCAGCAGCAAGTAAGAATTTAC
TCTGATTTCCATTTCGCCTCCTCTGTCTGATCTGGTACCCGCCGCGCATT
CTGATTTAAGGTTCCACAATGATTATTTTGTAACTTTACTCTGAGCTATC
GTTTCAGTTCATTTGCCGTTTTAGTGTCGTTCAATTTTGTTCTATCTGTT
CTCGTTTCTTTATGTTTGATCTTGCAACTTTTTTATCAGTTTCCCGGCTC
TATTCTCACTAGACTAAGAGTCGCAACTTCTGACTTGGACTTTGCTTTCT
GGTGATTTTGATGGCGCTTAGTTCAGCGAAATAGGATTCTGCCATAGTGA
TTTTTTTTACTTGCGTTTACCTCCAAACTTTGAAAACAATGATCCCTTGG
TCatagttttctgtttgtttttcgcCAAAAGGTCACATGATTTAGTGGCA
TAgatttgctaccacctcaagcacAGCCAAACAATCAAGTCTGCCAAATT
GCGCCAGAGCGACTTATAATACTACCAGTAATCGCTGGGATAGCAGGCCA
TATTTAagaaaggcaaggcagcgtccgttggtggccaaaaagggcacttt
ttctagTGTTTTGCCACTAAATAACGCTGTTTTTACAAATATATTATAGT
AATTTCAGGAGGAGCAGCGTCCGATAACTTAACGCTTAAAGGGCCTAGAT
AGACTGTCATGATAACCTCGGCTCCCTCGGCTCAATATCGACAATATTTG
GGATCGTTCTCATACAGTAATTTGTGTTTTTATCCAGTTGTAAAAAATGT
CCCAGATTCCTATCATTCAAGCAGGTCATGGGGGATACCTGCAAGTGAAG
TCGAAGTGAAGGGTACAGGTATGTACTGCCTAGAGTGTAAAATCTATAAG
GGCCTTTCTTTCATCttcctttttagtttttttttttgaaaagaagaaag
tatATCTTTTATAGATTATTCCTAAAATGATACAATGATTTTCCTGAGgt
caaaatattattgaaatttgacaaaagaaaacacaaaaagcaaaaaaaca
aaaaaacaaaccacAGCACAAAAAAT

Coding sequence (CDS) from alignment at scaffold_146:91121..95146

>TCONS_00048789 ID=TCONS_00048789|Name=TCONS_00048789|organism=Clytia hemisphaerica|type=CDS|length=375bp|location=Sequence derived from alignment at scaffold_146:91121..95146 (Clytia hemisphaerica)
CTAGGAAAGGAAATTATATTTTACGATATTACTTTTCACTGTGAAAATAA
GATGTCTTAAGTTACATGAAAACTTATAATAAAGAAGAAGCATGTTAAAG
ACGACTTTTGACGAACCCTTGGACGGATAACTGTCGTACAAAATGTCCGT
CATAGTTTCGTTATCACTGTGCTCGTCATCAGTAGATTTGACGTTTATGG
GTTCTTTGTCGCTGGATTCTTCGTCGGTAGATTCGACGTCGGTGGTCTCt
cctgttgttgttgttgcatgCATTACCTTCTTTTCTAGTGTTTGTTCTTT
CTGTTGGAGAGATTCTAGGTATTTCATCTTTCTAGATTTTCCGGTTTCCT
GCTGACTTTCCTCAGGCTGCTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031008XLOC_031008Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048789-proteinTCONS_00048789-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048789-exon-scaffold_146-1491911889:91121..95146TCONS_00048789-exon-scaffold_146-1491911889:91121..95146Clytia hemisphaericaexon
TCONS_00048789-exon-scaffold_146-1510915933:91121..95146TCONS_00048789-exon-scaffold_146-1510915933:91121..95146Clytia hemisphaericaexon
TCONS_00048789-exon-scaffold_146-1575043694:91121..95146TCONS_00048789-exon-scaffold_146-1575043694:91121..95146Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:91121..95146 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.275281	0.277367	0.442017	0.579044	1.19455	0.781748	1.33528	1.64133	0.511231	0.917294	1.15943	0.527222	0.470395	0.758863	0.274447	0.297529	0.333282	0.332285	0.340506	0.162796	0.182096	0.198598	0.194214	0.155021	1.53639	2.11728	0.275734	0.166413	0.218301	0.244348
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048789 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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