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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048788 ID=TCONS_00048788|Name=TCONS_00048788|organism=Clytia hemisphaerica|type=transcript|length=1116bp
cgaGAATTTGCATGCAGAATTTCTAtgatattttgttttgtgaaggtggg
ggctaattttttttgccagaCTTCAttttcccttccctttttacgAAAAA
CAAATAGAGAGAAAACAAGGCAATTGATTTTTAGAAGGGTGTAGCAGCAA
GAAGGGGATTATCGGATCGCACTATACATaacatattcttaaaaatttag
cccaaaacaCTGGGGGACACTACCAGACATGCAGCCCTTATGGGTaggtt
ttttgtattttggaaagtgcactgtactgaaaagggcaaaaaatttagaa
aaaaaatttagagacctgatttatGGCTGAACCCACGGGGGATCCCCTTT
CCGCACTAAGTGCAAAATGGTTGAAAAGTTACTGCCTAAAAAACACTGCA
CACCTTTTTGACGCAAACTTAAGTTTGATTAGTACTCCATGAAATTGATT
AATGGAAAACTAATTGATTCAATTAGCTTGATCAAAGTCAATGATTTtgg
taatcaaatttttttattagttACGTCCGGTCAATACaaccaaaaactaa
aaaattttgaatatcgaCTAGCTATTGATTATCAAATTAATTGATATCTA
ATAGATCAATTTTAATCAATATCCAAATCCAATAAATATCTATTCATGCA
TTGCTTATTCTGACTTTGCAATAGCAGGTACTGAAACAAAtacaattttg
tcaattttaccCCATTACCCCTGGGTTAAGATAATATGTAAAATGCATgt
gaatttaaagtttttttttgttttttttctagtTCAAATTATTACCATAT
GGCCCACTGGGGGATTATATTGATGATTGTATTCAAAATGCCTTGGGTGT
TGATCATCTTGCTCATACCTTCATTGTGGACAACTGGAATGATAAACACA
AGCTGGTCAACGCGGCAGAATCCTTATTTACAATTGATTAATTTGAACTT
CGTTTATATCATTTAGCAATTAATAAACCAATTCAATCATGATCACCGTC
ACGTGGACTACAGAACATGTATTACGTCTGGAAGTGAACACGATCATCAC
GATGACGATAATAACTATAGACTTTTATCACCAAACAATAACCATGCATG
AACAACAAAACCAGGA Run BLAST on NCBI transcript from alignment at scaffold_146:88406..89521 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048788 ID=TCONS_00048788|Name=TCONS_00048788|organism=Clytia hemisphaerica|type=transcript|length=1116bp|location=Sequence derived from alignment at scaffold_146:88406..89521 (Clytia hemisphaerica)
TCCTGGTTTTGTTGTTCATGCATGGTTATTGTTTGGTGATAAAAGTCTAT
AGTTATTATCGTCATCGTGATGATCGTGTTCACTTCCAGACGTAATACAT
GTTCTGTAGTCCACGTGACGGTGATCATGATTGAATTGGTTTATTAATTG
CTAAATGATATAAACGAAGTTCAAATTAATCAATTGTAAATAAGGATTCT
GCCGCGTTGACCAGCTTGTGTTTATCATTCCAGTTGTCCACAATGAAGGT
ATGAGCAAGATGATCAACACCCAAGGCATTTTGAATACAATCATCAATAT
AATCCCCCAGTGGGCCATATGGTAATAATTTGAactagaaaaaaaacaaa
aaaaaactttaaattcacATGCATTTTACATATTATCTTAACCCAGGGGT
AATGGggtaaaattgacaaaattgtaTTTGTTTCAGTACCTGCTATTGCA
AAGTCAGAATAAGCAATGCATGAATAGATATTTATTGGATTTGGATATTG
ATTAAAATTGATCTATTAGATATCAATTAATTTGATAATCAATAGCTAGt
cgatattcaaaattttttagtttttggttGTATTGACCGGACGTaactaa
taaaaaaatttgattaccaAAATCATTGACTTTGATCAAGCTAATTGAAT
CAATTAGTTTTCCATTAATCAATTTCATGGAGTACTAATCAAACTTAAGT
TTGCGTCAAAAAGGTGTGCAGTGTTTTTTAGGCAGTAACTTTTCAACCAT
TTTGCACTTAGTGCGGAAAGGGGATCCCCCGTGGGTTCAGCCataaatca
ggtctctaaattttttttctaaattttttgcccttttcagtacagtgcac
tttccaaaatacaaaaaacctACCCATAAGGGCTGCATGTCTGGTAGTGT
CCCCCAGtgttttgggctaaatttttaagaatatgttATGTATAGTGCGA
TCCGATAATCCCCTTCTTGCTGCTACACCCTTCTAAAAATCAATTGCCTT
GTTTTCTCTCTATTTGTTTTTcgtaaaaagggaagggaaaaTGAAGtctg
gcaaaaaaaattagcccccaccttcacaaaacaaaatatcaTAGAAATTC
TGCATGCAAATTCtcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048788-exon-scaffold_146-1491911889:88406..89521 | TCONS_00048788-exon-scaffold_146-1491911889:88406..89521 | Clytia hemisphaerica | exon |
| TCONS_00048788-exon-scaffold_146-1510915933:88406..89521 | TCONS_00048788-exon-scaffold_146-1510915933:88406..89521 | Clytia hemisphaerica | exon |
| TCONS_00048788-exon-scaffold_146-1575043694:88406..89521 | TCONS_00048788-exon-scaffold_146-1575043694:88406..89521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:88406..89521 . |
Blast
The following BLAST results are available for this feature:
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