TCONS_00048781 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048781
Unique NameTCONS_00048781
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length306

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048781 ID=TCONS_00048781|Name=TCONS_00048781|organism=Clytia hemisphaerica|type=transcript|length=306bp
CCAGTAGCCTGTCTACAATGCATTGAGTTCCAGCACATGACAgaataaat
ctttcaaaattggATTGTTCTGGTCTAAGCAATTTTTCGTTTCAACAGTT
TTTAtccttaaaataaatttttctgtgCAACACGAACGAAAATTTTCACA
AAGCATCGAACAACCATGAGATGCGTTCTTCTGTCAAGGGTAATAAATCA
TCACtggtcaaacttttattgatctTCATAAGTCTGCCAATATAACGAGT
CTTTCTTTGACCATTCTTTCTTCTCTATTCTATTTTTGTTTGTTCACCAA
ATCATC
Run BLAST on NCBI

transcript from alignment at scaffold_146:60338..60643

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048781 ID=TCONS_00048781|Name=TCONS_00048781|organism=Clytia hemisphaerica|type=transcript|length=306bp|location=Sequence derived from alignment at scaffold_146:60338..60643 (Clytia hemisphaerica)
GATGATTTGGTGAACAAACAAAAATAGAATAGAGAAGAAAGAATGGTCAA
AGAAAGACTCGTTATATTGGCAGACTTATGAagatcaataaaagtttgac
caGTGATGATTTATTACCCTTGACAGAAGAACGCATCTCATGGTTGTTCG
ATGCTTTGTGAAAATTTTCGTTCGTGTTGcacagaaaaatttattttaag
gaTAAAAACTGTTGAAACGAAAAATTGCTTAGACCAGAACAATccaattt
tgaaagatttattcTGTCATGTGCTGGAACTCAATGCATTGTAGACAGGC
TACTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031000XLOC_031000Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048781-exon-scaffold_146-1491911889:60338..60643TCONS_00048781-exon-scaffold_146-1491911889:60338..60643Clytia hemisphaericaexon
TCONS_00048781-exon-scaffold_146-1510915933:60338..60643TCONS_00048781-exon-scaffold_146-1510915933:60338..60643Clytia hemisphaericaexon
TCONS_00048781-exon-scaffold_146-1575043694:60338..60643TCONS_00048781-exon-scaffold_146-1575043694:60338..60643Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:60338..60643 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.46198	1.42566	0	0	0.49289	1.16846	0.469901	2.19958	0	0	0.370295	0	0.243079	0.25244	0.20754	0.668166	0	0	0	0.813134	0	0	0.419069	0.380994	0	0.350221	1.00233	1.60457	0.811341	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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