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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048754 ID=TCONS_00048754|Name=TCONS_00048754|organism=Clytia hemisphaerica|type=transcript|length=1142bpRun BLAST on NCBI protein sequence of TCONS_00048754-protein >TCONS_00048754-protein ID=TCONS_00048754-protein|Name=TCONS_00048754-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp MMKSKSYKKKVKRIIEYSTDKTKWRSRKEEDVPIDVMDRPSVYHATVVIFRun BLAST on NCBI transcript from alignment at scaffold_146:315898..350342- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048754 ID=TCONS_00048754|Name=TCONS_00048754|organism=Clytia hemisphaerica|type=transcript|length=34445bp|location=Sequence derived from alignment at scaffold_146:315898..350342- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_146:315898..350342- >TCONS_00048754 ID=TCONS_00048754|Name=TCONS_00048754|organism=Clytia hemisphaerica|type=CDS|length=10230bp|location=Sequence derived from alignment at scaffold_146:315898..350342- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048754 vs. Swiss-Prot (Human)
Match: MF14A (Hippocampus abundant transcript 1 protein OS=Homo sapiens GN=MFSD14A PE=1 SV=2) HSP 1 Score: 398.282 bits (1022), Expect = 9.044e-135 Identity = 217/316 (68.67%), Postives = 266/316 (84.18%), Query Frame = 2
Query: 128 KEEDVPIDVMDRPSVYHATVVIFLEFFAWGLLTSPSITVLAETFPENTFLMNGIIQGIKGFLSFLSAPLIGALSDVWGRKSFLLLTVFFTCVPIPLLRFNPWWFFACLSISGTFSVTFSIVFAYVADCTDKSDRSHAYGLVSATFAASLITSPALGAYLGTVYSDSXXXXXXXXXXXXDMLFILVCVPESLPERLRPVSWGKSIPWEKADPFSSLRKVGNDPMVLLLCITIFLSYLPEAGQYSCIFLYLQHTIGFNQQEVAIYIAVVGFXXXXXXXXXXXXXXXXXXXXXXXCLALTFQILQLIWYGLSTQFW*VW 1075
K+ P + PSVYHA +VIFLEFFAWGLLT+P++ VL ETFP++TFLMNG+IQG+KG LSFLSAPLIGALSDVWGRKSFLLLTVFFTC PIPL++ +PWW+FA +S+SG F+VTFS+VFAYVAD T + +RS AYGLVSATFAASL+TSPA+GAYLG VY DS+VV LATAIALLD+ FILV VPESLPE++RP SWG I WE+ADPF+SL+KVG D +VLL+CIT+FLSYLPEAGQYS FLYL+ + F+ + VA +IAV+G LS+I QT+VL+LL++++G K+TI L L FQILQL WYG ++ W +W
Sbjct: 24 KDGGTPQGI-GSPSVYHAVIVIFLEFFAWGLLTAPTLVVLHETFPKHTFLMNGLIQGVKGLLSFLSAPLIGALSDVWGRKSFLLLTVFFTCAPIPLMKISPWWYFAVISVSGVFAVTFSVVFAYVADITQEHERSMAYGLVSATFAASLVTSPAIGAYLGRVYGDSLVVVLATAIALLDICFILVAVPESLPEKMRPASWGAPISWEQADPFASLKKVGQDSIVLLICITVFLSYLPEAGQYSSFFLYLRQIMKFSPESVAAFIAVLGILSIIAQTIVLSLLMRSIGNKNTILLGLGFQILQLAWYGFGSEPWMMW 338 The following BLAST results are available for this feature:
BLAST of TCONS_00048754 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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