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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048750 ID=TCONS_00048750|Name=TCONS_00048750|organism=Clytia hemisphaerica|type=transcript|length=934bp
taaaaagttaacgCTCAAAACCTTGATGCTGTTGTAAAGGTTTTCTCATC
TCAAAGAATAATTTCAGAATTCTTCTCTTTCGAAACTAAACTACATAATG
AAAGAATACAAATTCAACGGCAGCCGAAATACGCGTGGTGAGCGTCATGG
TTACGGGGAAACCATTTTGACAAATGGTGACCAATACAAAGGTGATTATA
AGAATGGATTACGTCATGGCAAAGGGGAATACTTGTTTACGTCATCTTTG
ACGCTCGATGCTAATGTACCGGTAACGAAAACTGTGAAATATATCGGCCA
TTATGAAGAGAATAAAAAGACTGGACATGGTATTTTTATATACCCAAATG
GATCAAGGTACGAAGGCGAATGGAAAGATAACAAACGCCATGGCAACGGC
ACATATTACTATAGCAACGGAGATGTTTACTCAGGAGATTGGGTACAAGA
CTGCCGTCATGGAAACGGAACGTAcgaatattttacagaccagatgaAGT
ATATTGGAATGTGGCGCAAAGGAAAAAGATCGGGCGAAGGGAAGCTTGTC
TACAAGAGCTCATATTATGACGGACAATTTCGTCATGACAAAATGTTGGG
TCCTGGTAAATATGTTTTCGAGAATGGAACAATCCACTATGGAGAATATG
TGGTTGATGAAGTGCGAAAAGCAAAAGGAGTTGGGAACGAATTTGTAACA
CAATGGAGATGCAAAAATGTATGCAAGTGATATGCCGTCGTTCCGAGGGT
GCTGTTTAGGTcagtctccactttcgcgcgataTGAGCGAacactttttg
acgtttttgtaaggtcattggtcggttgaaaaataaagcaattccattgg
tcgaaattgacgtaacggatgaaaaaagtagaatttcaactttatttttg
ttagtgcgaaacttttttatgacgtaatcttttc Run BLAST on NCBI protein sequence of TCONS_00048750-protein >TCONS_00048750-protein ID=TCONS_00048750-protein|Name=TCONS_00048750-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MKEYKFNGSRNTRGERHGYGETILTNGDQYKGDYKNGLRHGKGEYLFTSS
LTLDANVPVTKTVKYIGHYEENKKTGHGIFIYPNGSRYEGEWKDNKRHGN
GTYYYSNGDVYSGDWVQDCRHGNGTYEYFTDQMKYIGMWRKGKRSGEGKL
VYKSSYYDGQFRHDKMLGPGKYVFENGTIHYGEYVVDEVRKAKGVGNEFV
TQWRCKNVCK Run BLAST on NCBI transcript from alignment at scaffold_146:245270..247139- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048750 ID=TCONS_00048750|Name=TCONS_00048750|organism=Clytia hemisphaerica|type=transcript|length=1870bp|location=Sequence derived from alignment at scaffold_146:245270..247139- (Clytia hemisphaerica)
TAAAAAGTTAACGCTCAAAACCTTGATGCTGTTGTAAAGGTTTTCTCATC
TCAAAGAATAATTTCAGAATTCTTCTCTTTCGAAACTAAACTACATAATG
AAAGAATACAAATTCAACGGCAGCCGAAATACGCGTGGTGAGCGTCATGG
TTACGGGGAAACCATTTTGACAAATGGTGACCAATACAAAGGTGATTATA
AGAATGGATTACGTCATGGCAAAGGGGAATACTTGTTTACGTCATCTTTG
ACGCTCGATGCTAATGTACCGGTAACGAAAACTGTGAAATATATCGGCCA
TTATGAAGAGAATAAAAAGACTGGACATGGTATTTTTATATACCCAAATG
GATCAAGGTACGATACAATGTTCAAAATATATTGAGAATTTATCCTAACG
TTTTTCTTAATTTCAAGTTTTCTGCGAGAACTACGATTTTAGTAATTCCT
CTCTATTTTATTGAATATTTTGATTTCGGAGGAGTTCAGTTAGAACAATG
AGATTCTTATTTCCTCCAAAGTTTTAAGTTTCATGGTAAAACTCTACATT
CCAGAAGTAAATTAGAGCGCCTAAAAATCATCTGTGGTTGTCTCAAATAT
TTTGTCCAAGAGTGTAGTAAAGGCATTCTTTGATGGGAGATATAATATTA
CTCAATCTTGTACCCAGGGTCTTTTGCACCGCTTTTTGATTTTATCACTG
GGCGTAATATAATTGTGAGCGTTATTAGTCTGAATCGCAGACACGAATTC
GTTGGATACCAGCAGCAGCCTGGAACACAATTAGAGTGATATATCGAACT
AAAGGGCGTGGGCTCGAGAATGAGAACTTTGAATGTTATTGAACGCGTAC
GAAAATAATTTCGTTAAATTTTGAGAAAAATAATTTTGTACTTTCTTCAT
ATAAGGTACGAAGGCGAATGGAAAGATAACAAACGCCATGGCAACGGCAC
ATATTACTATAGCAACGGAGATGTTTACTCAGGAGATTGGGTACAAGACT
GCCGTCATGGAAACGGAACGTACGAATATTTTACAGACCAGATGAAGTAT
ATTGGAATGTGGCGCAAAGGAAAAAGATCGGGTGAGGGTTTTTTGTGGGA
TGGGTGTGAAAAATCAAAAATTTGGCTTGTTTTTGTTTTTTGTTTTTGAA
TGTCCGGGAGATTAACTGTTCCTTGTCCGGTGGGTCAGAATTTGCAATTT
CACGGGGTAAATTTCCTAAAAATCAATATCGAAATATTTACTATAGCTAT
ACAACGAACATGATCTTTTTGTATCTCAGTTGTTTCTCTAATTCAGTCTT
CAGGGGGACTAAAATATTTTCTACAAATTATAGAAAAATTCGAACGACAG
AAAGTATTGTTACACGGTATTCCAGATGAGGGGACCAATGTTCAAATATT
AGGAATTCGATTTAGAGAAGGTTGACTATAGATGCTTCCCCGATAAAAAG
ATGTACGATATTTTTCCAGGCGAAGGGAAGCTTGTCTACAAGAGCTCATA
TTATGACGGACAATTTCGTCATGACAAAATGTTGGGTCCTGGTAAATATG
TTTTCGAGAATGGAACAATCCACTATGGAGAATATGTGGTTGATGAAGTG
CGAAAAGCAAAAGGAGTTGGGAACGAATTTGTAACACAATGGAGATGCAA
AAATGTATGCAAGTGATATGCCGTCGTTCCGAGGGTGCTGTTTAGGTCAG
TCTCCACTTTCGCGCGATATGAGCGAACACTTTTTGACGTTTTTGTAAGG
TCATTGGTCGGTTGAAAAATAAAGCAATTCCATTGGTCGAAATTGACGTA
ACGGATGAAAAAAGTAGAATTTCAACTTTATTTTTGTTAGTGCGAAACTT
TTTTATGACGTAATCTTTTC Coding sequence (CDS) from alignment at scaffold_146:245270..247139- >TCONS_00048750 ID=TCONS_00048750|Name=TCONS_00048750|organism=Clytia hemisphaerica|type=CDS|length=1899bp|location=Sequence derived from alignment at scaffold_146:245270..247139- (Clytia hemisphaerica)
GCGAAGGGAAGCTTGTCTACAAGAGCTCATATTATGACGGACAATTTCGT
CATGACAAAATGTTGGGTCCTGGTAAATATGTTTTCGAGAATGGAACAAT
CCACTATGGAGAATATGTGGTTGATGAAGTGCGAAAAGCAAAAGGAGTTG
GGAACGAATTTGTAACACAATGGAGATGCAAAAATGTATGCAAGTGAGTA
CGAAGGCGAATGGAAAGATAACAAACGCCATGGCAACGGCACATATTACT
ATAGCAACGGAGATGTTTACTCAGGAGATTGGGTACAAGACTGCCGTCAT
GGAAACGGAACGTACGAATATTTTACAGACCAGATGAAGTATATTGGAAT
GTGGCGCAAAGGAAAAAGATCGGATGAAAGAATACAAATTCAACGGCAGC
CGAAATACGCGTGGTGAGCGTCATGGTTACGGGGAAACCATTTTGACAAA
TGGTGACCAATACAAAGGTGATTATAAGAATGGATTACGTCATGGCAAAG
GGGAATACTTGTTTACGTCATCTTTGACGCTCGATGCTAATGTACCGGTA
ACGAAAACTGTGAAATATATCGGCCATTATGAAGAGAATAAAAAGACTGG
ACATGGTATTTTTATATACCCAAATGGATCAAGGCGAAGGGAAGCTTGTC
TACAAGAGCTCATATTATGACGGACAATTTCGTCATGACAAAATGTTGGG
TCCTGGTAAATATGTTTTCGAGAATGGAACAATCCACTATGGAGAATATG
TGGTTGATGAAGTGCGAAAAGCAAAAGGAGTTGGGAACGAATTTGTAACA
CAATGGAGATGCAAAAATGTATGCAAGTGAGTACGAAGGCGAATGGAAAG
ATAACAAACGCCATGGCAACGGCACATATTACTATAGCAACGGAGATGTT
TACTCAGGAGATTGGGTACAAGACTGCCGTCATGGAAACGGAACGTACGA
ATATTTTACAGACCAGATGAAGTATATTGGAATGTGGCGCAAAGGAAAAA
GATCGGATGAAAGAATACAAATTCAACGGCAGCCGAAATACGCGTGGTGA
GCGTCATGGTTACGGGGAAACCATTTTGACAAATGGTGACCAATACAAAG
GTGATTATAAGAATGGATTACGTCATGGCAAAGGGGAATACTTGTTTACG
TCATCTTTGACGCTCGATGCTAATGTACCGGTAACGAAAACTGTGAAATA
TATCGGCCATTATGAAGAGAATAAAAAGACTGGACATGGTATTTTTATAT
ACCCAAATGGATCAAGGCGAAGGGAAGCTTGTCTACAAGAGCTCATATTA
TGACGGACAATTTCGTCATGACAAAATGTTGGGTCCTGGTAAATATGTTT
TCGAGAATGGAACAATCCACTATGGAGAATATGTGGTTGATGAAGTGCGA
AAAGCAAAAGGAGTTGGGAACGAATTTGTAACACAATGGAGATGCAAAAA
TGTATGCAAGTGAGTACGAAGGCGAATGGAAAGATAACAAACGCCATGGC
AACGGCACATATTACTATAGCAACGGAGATGTTTACTCAGGAGATTGGGT
ACAAGACTGCCGTCATGGAAACGGAACGTACGAATATTTTACAGACCAGA
TGAAGTATATTGGAATGTGGCGCAAAGGAAAAAGATCGGATGAAAGAATA
CAAATTCAACGGCAGCCGAAATACGCGTGGTGAGCGTCATGGTTACGGGG
AAACCATTTTGACAAATGGTGACCAATACAAAGGTGATTATAAGAATGGA
TTACGTCATGGCAAAGGGGAATACTTGTTTACGTCATCTTTGACGCTCGA
TGCTAATGTACCGGTAACGAAAACTGTGAAATATATCGGCCATTATGAAG
AGAATAAAAAGACTGGACATGGTATTTTTATATACCCAAATGGATCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048750-exon-scaffold_146-1575043694:246783..247139 | TCONS_00048750-exon-scaffold_146-1575043694:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1575043694:246059..246234 | TCONS_00048750-exon-scaffold_146-1575043694:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1575043694:245270..245670 | TCONS_00048750-exon-scaffold_146-1575043694:245270..245670 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1510915933:246783..247139 | TCONS_00048750-exon-scaffold_146-1510915933:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1510915933:246059..246234 | TCONS_00048750-exon-scaffold_146-1510915933:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1510915933:245270..245670 | TCONS_00048750-exon-scaffold_146-1510915933:245270..245670 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1491911889:246783..247139 | TCONS_00048750-exon-scaffold_146-1491911889:246783..247139 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1491911889:246059..246234 | TCONS_00048750-exon-scaffold_146-1491911889:246059..246234 | Clytia hemisphaerica | exon |
| TCONS_00048750-exon-scaffold_146-1491911889:245270..245670 | TCONS_00048750-exon-scaffold_146-1491911889:245270..245670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:245270..247139 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR003409 | MORN |
Blast
BLAST of TCONS_00048750 vs. Swiss-Prot (Human)
Match: RSPH1 (Radial spoke head 1 homolog OS=Homo sapiens GN=RSPH1 PE=1 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 1.774e-47 Identity = 90/225 (40.00%), Postives = 126/225 (56.00%), Query Frame = 2
Query: 110 KFNGSRNTRGERHGYGETILTNGDQYKGDYKNGLRHGKGEYLFTSSLTLDANVPVTKTVKYIGHYEENKKTGHGIFIYPNGSRYEGEWKDNKRHGNGTYYYSNGDVYSGDWVQDCRHGNGTYEYFTDQMKYIGMWRKGKRSGEGKLVYKSSYYDGQFRHDKMLGPGKYVFENGTIHYGEYVVDEVRKAKGVGNE----FVTQWRCKNVCK*YAVVPRVLFRSVST 772
++ G RN GERHG G L NGD Y+G Y+ G RHG+G Y F + +YIG Y NKK G G FIYP+GSRYEGEW ++ RHG+G YYY N D Y+G+W RHG GTY Y KY+G W G++ G +L++ + Y G+F + +GPGKYVF+ G +GEY + ++ + + E V +W+ + + P + + ST
Sbjct: 19 EYEGGRNEAGERHGRGRARLPNGDTYEGSYEFGKRHGQGIYKFKNG------------ARYIGEYVRNKKHGQGTFIYPDGSRYEGEWANDLRHGHGVYYYINNDTYTGEWFAHQRHGQGTYLYAETGSKYVGTWVNGQQEGTAELIHLNHRYQGKFLNKNPVGPGKYVFDVGCEQHGEYRLTDMERGEEEEEEELVTVVPKWKATQITELALWTPTLPKKPTST 231
The following BLAST results are available for this feature:
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