TCONS_00048744 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048744
Unique NameTCONS_00048744
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1315

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048744 ID=TCONS_00048744|Name=TCONS_00048744|organism=Clytia hemisphaerica|type=transcript|length=1315bp
ATTGAACATATAAACCGTCGTTAGGTGTTACTTTGATAAGCGAGGTAGAC
TTTTTAAGTTACCCAACACATACGACAAAAAATAATAGAGACGTCGATTt
acctaccttaagggaagaaattttcgcggaatttaatttcgcgaatcaga
atttcaaaatggcaagtttcgcggaatttaatttcgcgaatgagctgatt
tcaaaagtttcacggaatttaatttcgcggttgagggaattatttgtcta
cgaaaagccctattttgccctaaaaagaccaattttaagggtgatttttt
taattgtgagaatattcgtgtttcgcggaatttgatttcgcggtttagcc
attttggtgtgtttcgcggaatttaactTTTTCAACTTGTAAGTTTATTA
ACTTTTTTTCAGATGGGACAGGTAAATTATTGGATTCGATTCCACCGGGC
GTTCCTGTCAATCAAGTCAGTAAGTAAATCACTTACcttgaaatttggaa
atacAATTATCTACGtgcaatttgaaaattttagataaATCAAGTTAAAC
CAATTTTTTCTTAGTAATTTCACCCCTGTTATCGAATTTATGACTGCATT
TAATACTATAACCCCTTTACCCCTTTACCTGATCATACAGATcacaaaag
atttattttggTTCTTTCATTATTGTTTCTGACATTACCACTTCAATTTG
TTTTCACAAGACAATTACTCGTCCACCGGGCGCAATCAGTGACCAACACC
AAACCAGCGATGTCGGGCTTGGCTATTGGGTCAATGCTGATGGGATGTTG
CCCCCACGCACGAAACTGGAAAGACGCTTCAATCAATAACGATCGTGGCC
GTGGGAGGGGCAGCTTTGGTGATGGGCGAGGTGGTGGTAGGGTTGGGCGT
GAACGGATTTGCCCCAGCCCGTTGCGGGAGATCAAAATGTTGGACGAAAG
TGCCATGTACTTAACTTATCTACAGATGAAGGGGTTCAGTCGGTCCTGCT
TTCAGACGAAGACCATAACATATGGATGCCGAAGGAAGGATGGCCATCAA
ATCTTTACCTTGGCAAGCCTGAACATAAAATCTTGACTGAGGAACAAgcg
aaaaaagaagaatttgaaTCCGAAATAAAGAGACTACGAGAGGAGAACAA
GAAGATGAAAGAAGATATTGAAAAACTAAAGCCGAAAGTTGATGAATTGT
GGAAATTGAAAGGTAATATCCCCACCTTTCGCAATTTCAAAAGCACATGT
CATGACAAACGTATTCCCTCAAAAGAAATCAACTCAGCTCTCTTTATAAT
GACATCATAGTAATC
Run BLAST on NCBI

transcript from alignment at scaffold_146:108002..109370-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048744 ID=TCONS_00048744|Name=TCONS_00048744|organism=Clytia hemisphaerica|type=transcript|length=1369bp|location=Sequence derived from alignment at scaffold_146:108002..109370- (Clytia hemisphaerica)
ATTGAACATATAAACCGTCGTTAGGTGTTACTTTGATAAGCGAGGTAGAC
TTTTTAAGTTACCCAACACATACGACAAAAAATAATAGAGACGTCGATTT
ACCTACCTTAAGGGAAGAAATTTTCGCGGAATTTAATTTCGCGAATCAGA
ATTTCAAAATGGCAAGTTTCGCGGAATTTAATTTCGCGAATGAGCTGATT
TCAAAAGTTTCACGGAATTTAATTTCGCGGTTGAGGGAATTATTTGTCTA
CGAAAAGCCCTATTTTGCCCTAAAAAGACCAATTTTAAGGGTGATTTTTT
TAATTGTGAGAATATTCGTGTTTCGCGGAATTTGATTTCGCGGTTTAGCC
ATTTTGGTGTGTTTCGCGGAATTTAACTTTTTCAACTTGTAAGTTTATTA
ACATTTTTCNGTTCAAGTATTATGCGAAATTTTCGACTTTAAGTCGTCTT
GTTAACTTTTTTTCAGATGGGACAGGTAAATTATTGGATTCGATTCCACC
GGGCGTTCCTGTCAATCAAGTCAGTAAGTAAATCACTTACCTTGAAATTT
GGAAATACAATTATCTACGTGCAATTTGAAAATTTTAGATAAATCAAGTT
AAACCAATTTTTTCTTAGTAATTTCACCCCTGTTATCGAATTTATGACTG
CATTTAATACTATAACCCCTTTACCCCTTTACCTGATCATACAGATCACA
AAAGATTTATTTTGGTTCTTTCATTATTGTTTCTGACATTACCACTTCAA
TTTGTTTTCACAAGACAATTACTCGTCCACCGGGCGCAATCAGTGACCAA
CACCAAACCAGCGATGTCGGGCTTGGCTATTGGGTCAATGCTGATGGGAT
GTTGCCCCCACGCACGAAACTGGAAAGACGCTTCAATCAATAACGATCGT
GGCCGTGGGAGGGGCAGCTTTGGTGATGGGCGAGGTGGTGGTAGGGTTGG
GCGTGAACGGATTTGCCCCAGCCCGTTGCGGGAGATCAAAATGTTGGACG
AAAGTGCCATGTACTTAACTTATCTACAGATGAAGGGGTTCAGTCGGTCC
TGCTTTCAGACGAAGACCATAACATATGGATGCCGAAGGAAGGATGGCCA
TCAAATCTTTACCTTGGCAAGCCTGAACATAAAATCTTGACTGAGGAACA
AGCGAAAAAAGAAGAATTTGAATCCGAAATAAAGAGACTACGAGAGGAGA
ACAAGAAGATGAAAGAAGATATTGAAAAACTAAAGCCGAAAGTTGATGAA
TTGTGGAAATTGAAAGGTAATATCCCCACCTTTCGCAATTTCAAAAGCAC
ATGTCATGACAAACGTATTCCCTCAAAAGAAATCAACTCAGCTCTCTTTA
TAATGACATCATAGTAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030980XLOC_030980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048744-exon-scaffold_146-1575043694:108969..109370TCONS_00048744-exon-scaffold_146-1575043694:108969..109370Clytia hemisphaericaexon
TCONS_00048744-exon-scaffold_146-1575043694:108002..108914TCONS_00048744-exon-scaffold_146-1575043694:108002..108914Clytia hemisphaericaexon
TCONS_00048744-exon-scaffold_146-1510915933:108969..109370TCONS_00048744-exon-scaffold_146-1510915933:108969..109370Clytia hemisphaericaexon
TCONS_00048744-exon-scaffold_146-1510915933:108002..108914TCONS_00048744-exon-scaffold_146-1510915933:108002..108914Clytia hemisphaericaexon
TCONS_00048744-exon-scaffold_146-1491911889:108969..109370TCONS_00048744-exon-scaffold_146-1491911889:108969..109370Clytia hemisphaericaexon
TCONS_00048744-exon-scaffold_146-1491911889:108002..108914TCONS_00048744-exon-scaffold_146-1491911889:108002..108914Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:108002..109370 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.630655	1.34413	0.843094	1.4677	2.19537	1.27918	1.11891	1.86085	0.303928	0.480849	1.1743	0.629004	0.355856	0.246632	0.402268	0.357759	0.810775	0.547649	0.0356877	0.440797	0.960338	1.22561	0.811687	1.07546	0.631569	1.34899	1.15569	0.807274	1.1892	1.15928
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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