TCONS_00048740 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048740
Unique NameTCONS_00048740
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048740 ID=TCONS_00048740|Name=TCONS_00048740|organism=Clytia hemisphaerica|type=transcript|length=564bp
TGGAAAATCATCTGTTGAACCATCTGGAAAATCATCTGTTAAGGCAATTG
GAAAGGGAGGCCATGAGTCAGATCCCAAGAAGTATGTGAAGAAGACTTGT
TACTTTTGCAACCTTAAGgaaagaaaatatcaaactttAATGAGAGAATA
TGAAGCTCTGCAGGAAGAGAACCAGAGGCTAGAGGAAACAATCAGTAATG
GCAGCATAATTCAAAACACTGACAGTAGACCAAGACCAGGTGTCATGTCG
GCAAAGACAGCTGAGAAATACAGATATGAACAACTCTTTGCTGGATATCC
AGTTTACATACCTCAAGAAGAGTTACAGGTTTTAAAGACAAAAGCAACAG
GTACAGCTGCTGTAAATTACTTGCTTGACGTCTTTTACAAACACGAAGAA
CAGCTGACTATGAATTTGAATGGTGCAAATGGCAAAGAGCGGGTCCATCC
AGATATTCTTTCTGCGATGCGGTCATATGCGCTGGACCCCAATAACAACT
ATAATGTGAAGAGGTCAGAGCTTAACCGCTCCCTTTCTAACAAATTGGAG
CAAAAGAAAACTAG
Run BLAST on NCBI

protein sequence of TCONS_00048740-protein

>TCONS_00048740-protein ID=TCONS_00048740-protein|Name=TCONS_00048740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
GKSSVEPSGKSSVKAIGKGGHESDPKKYVKKTCYFCNLKERKYQTLMREY
EALQEENQRLEETISNGSIIQNTDSRPRPGVMSAKTAEKYRYEQLFAGYP
VYIPQEELQVLKTKATGTAAVNYLLDVFYKHEEQLTMNLNGANGKERVHP
DILSAMRSYALDPNNNYNVKRSELNRSLSNKLEQKKT
Run BLAST on NCBI

transcript from alignment at scaffold_146:5812..7407-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048740 ID=TCONS_00048740|Name=TCONS_00048740|organism=Clytia hemisphaerica|type=transcript|length=1596bp|location=Sequence derived from alignment at scaffold_146:5812..7407- (Clytia hemisphaerica)
TGGAAAATCATCTGTTGAACCATCTGGAAAATCATCTGTTAAGGCAATTG
GAAAGGGAGGCCATGAGTCAGATCCCAAGAAGTATGTGAAGAAGACTTGT
TACTTTTGCAACCTTAAGGAAAGAAAATATCAAACTTTAATGAGAGAATA
TGAAGCTCTGCAGGAAGAGAACCAGAGGCTAGAGGAAACAATCAGTAATG
GCAGCATAAGTGAGTATTATTCAAATACCATTTCATTTCACAAACGAACT
TTCATTGTGCTCTGCGAGGATTTAATTTTGTCAACAACTATTTTTTAGGA
ATAACTAAAATGACAGTACACAATGACAAGACTTTTAACAGAACGACAAT
TTTTTTAATTGTGACGTTAGACAGTAAAATAGAAACCTTACAATGACTTA
CATCAATAAGAAATTACACCAGAATCATTAACATGACGACAAAACATTGA
CAAAACAGGCCGAATTTGGTAAGCATGTCGTGTAAATAACTTTAACTTTG
ATTTCATTAATTTAGCCCTACATTTTACTTAAAACTCAGCAATACCAGGA
TTGTTTTTCAATTGTTCTTATTTTTTATATTTCTGAGCCTCGATGTTCTT
ATAAAATTATTCTTAAAAAATATTATTATAAACTTTCATATTTACAGTTC
AAAACACTGACAGTAGACCAAGACCAGGTGTCATGTCGGCAAAGACAGCT
GAGAAATACAGAGTAAGGACTTTCAATGATTAAGTTTTACTTTATTTTGA
ACTTGGGAAAGCCTGGATACTGAGACAGCATTTATGAAAATACAAATTAA
AATAAACCTATAAGGCTCGATTAAACATAGTTGGCATTAATAGTTATCAT
TTTCTGAAATTATTTGATAACATGGTTTTTTTTCTTACTTTCAGTATGAA
CAACTCTTTGCTGGATATCCAGTTTACATACCTCAAGAAGAGTTACAGGT
TTTAAAGACAAAAGCAACAGGTACAGCTGCTGTAAATTACTTGCTTGACG
TCTTTTACAAACACGAAGAACAGCTGACTATGAATTTGAATGGTGCAAAT
GGCAAAGAGCGGGTCCATCCAGATATTCTTTCTGCGATGCGGTGTAAGTC
ATTTGTATTTCTTTTCAGAAACGCTGTGGAGATCATTCTCTTAGATTCAG
TATATAGGTTTTCCATGAATAGTCAATTTTAATCATCGGGTAACTAGTAA
GCATCCAAAGTTTTCCACTTATAAATTTTTATTATAAGCCCCCGGATAAT
TCATTATTGGGAAAATATTTTTGAAAGTATATTTGTTTGCCCTAATTCTT
CTGTATTTAGCCTTTTTATCAAAAAATTTCTATTCAGGACATTTTTATCT
CCCTTGCTTATAAAGTGTTAATTTTTTCTCCGCCCATCTCTGTCCAAAGA
AATGAAAGTTATGCTTGTGGAAACCTGATAAGTCCCAAAGATTTTGTTGA
AAAATAAAACATGTATTTTCAAAGCCAAAATAAAACGCTTTTTTTTTACC
AATAGCATATGCGCTGGACCCCAATAACAACTATAATGTGAAGAGGTCAG
AGCTTAACCGCTCCCTTTCTAACAAATTGGAGCAAAAGAAAACTAG

Coding sequence (CDS) from alignment at scaffold_146:5812..7407-

>TCONS_00048740 ID=TCONS_00048740|Name=TCONS_00048740|organism=Clytia hemisphaerica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_146:5812..7407- (Clytia hemisphaerica)
CATATGCGCTGGACCCCAATAACAACTATAATGTGAAGAGGTCAGAGCTT
AACCGCTCCCTTTCTAACAAATTGGAGCAAAAGAAAACTTATGAACAACT
CTTTGCTGGATATCCAGTTTACATACCTCAAGAAGAGTTACAGGTTTTAA
AGACAAAAGCAACAGGTACAGCTGCTGTAAATTACTTGCTTGACGTCTTT
TACAAACACGAAGAACAGCTGACTATGAATTTGAATGGTGCAAATGGCAA
AGAGCGGGTCCATCCAGATATTCTTTCTGCGATGCGGTTTCAAAACACTG
ACAGTAGACCAAGACCAGGTGTCATGTCGGCAAAGACAGCTGAGAAATAC
AGAGGAAAATCATCTGTTGAACCATCTGGAAAATCATCTGTTAAGGCAAT
TGGAAAGGGAGGCCATGAGTCAGATCCCAAGAAGTATGTGAAGAAGACTT
GTTACTTTTGCAACCTTAAGGAAAGAAAATATCAAACTTTAATGAGAGAA
TATGAAGCTCTGCAGGAAGAGAACCAGAGGCTAGAGGAAACAATCAGTAA
TGGCAGCATAACATATGCGCTGGACCCCAATAACAACTATAATGTGAAGA
GGTCAGAGCTTAACCGCTCCCTTTCTAACAAATTGGAGCAAAAGAAAACT
TATGAACAACTCTTTGCTGGATATCCAGTTTACATACCTCAAGAAGAGTT
ACAGGTTTTAAAGACAAAAGCAACAGGTACAGCTGCTGTAAATTACTTGC
TTGACGTCTTTTACAAACACGAAGAACAGCTGACTATGAATTTGAATGGT
GCAAATGGCAAAGAGCGGGTCCATCCAGATATTCTTTCTGCGATGCGGTT
TCAAAACACTGACAGTAGACCAAGACCAGGTGTCATGTCGGCAAAGACAG
CTGAGAAATACAGAGGAAAATCATCTGTTGAACCATCTGGAAAATCATCT
GTTAAGGCAATTGGAAAGGGAGGCCATGAGTCAGATCCCAAGAAGTATGT
GAAGAAGACTTGTTACTTTTGCAACCTTAAGGAAAGAAAATATCAAACTT
TAATGAGAGAATATGAAGCTCTGCAGGAAGAGAACCAGAGGCTAGAGGAA
ACAATCAGTAATGGCAGCATAACATATGCGCTGGACCCCAATAACAACTA
TAATGTGAAGAGGTCAGAGCTTAACCGCTCCCTTTCTAACAAATTGGAGC
AAAAGAAAACTTATGAACAACTCTTTGCTGGATATCCAGTTTACATACCT
CAAGAAGAGTTACAGGTTTTAAAGACAAAAGCAACAGGTACAGCTGCTGT
AAATTACTTGCTTGACGTCTTTTACAAACACGAAGAACAGCTGACTATGA
ATTTGAATGGTGCAAATGGCAAAGAGCGGGTCCATCCAGATATTCTTTCT
GCGATGCGGTTTCAAAACACTGACAGTAGACCAAGACCAGGTGTCATGTC
GGCAAAGACAGCTGAGAAATACAGAGGAAAATCATCTGTTGAACCATCTG
GAAAATCATCTGTTAAGGCAATTGGAAAGGGAGGCCATGAGTCAGATCCC
AAGAAGTATGTGAAGAAGACTTGTTACTTTTGCAACCTTAAGGAAAGAAA
ATATCAAACTTTAATGAGAGAATATGAAGCTCTGCAGGAAGAGAACCAGA
GGCTAGAGGAAACAATCAGTAATGGCAGCATAACATATGCGCTGGACCCC
AATAACAACTATAATGTGAAGAGGTCAGAGCTTAACCGCTCCCTTTCTAA
CAAATTGGAGCAAAAGAAAACTTATGAACAACTCTTTGCTGGATATCCAG
TTTACATACCTCAAGAAGAGTTACAGGTTTTAAAGACAAAAGCAACAGGT
ACAGCTGCTGTAAATTACTTGCTTGACGTCTTTTACAAACACGAAGAACA
GCTGACTATGAATTTGAATGGTGCAAATGGCAAAGAGCGGGTCCATCCAG
ATATTCTTTCTGCGATGCGGTTTCAAAACACTGACAGTAGACCAAGACCA
GGTGTCATGTCGGCAAAGACAGCTGAGAAATACAGAGGAAAATCATCTGT
TGAACCATCTGGAAAATCATCTGTTAAGGCAATTGGAAAGGGAGGCCATG
AGTCAGATCCCAAGAAGTATGTGAAGAAGACTTGTTACTTTTGCAACCTT
AAGGAAAGAAAATATCAAACTTTAATGAGAGAATATGAAGCTCTGCAGGA
AGAGAACCAGAGGCTAGAGGAAACAATCAGTAATGGCAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030977XLOC_030977Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048740-exon-scaffold_146-1575043694:7199..7407TCONS_00048740-exon-scaffold_146-1575043694:7199..7407Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1575043694:6696..6760TCONS_00048740-exon-scaffold_146-1575043694:6696..6760Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1575043694:6315..6513TCONS_00048740-exon-scaffold_146-1575043694:6315..6513Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1575043694:5812..5902TCONS_00048740-exon-scaffold_146-1575043694:5812..5902Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1510915933:7199..7407TCONS_00048740-exon-scaffold_146-1510915933:7199..7407Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1510915933:6696..6760TCONS_00048740-exon-scaffold_146-1510915933:6696..6760Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1510915933:6315..6513TCONS_00048740-exon-scaffold_146-1510915933:6315..6513Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1510915933:5812..5902TCONS_00048740-exon-scaffold_146-1510915933:5812..5902Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1491911889:7199..7407TCONS_00048740-exon-scaffold_146-1491911889:7199..7407Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1491911889:6696..6760TCONS_00048740-exon-scaffold_146-1491911889:6696..6760Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1491911889:6315..6513TCONS_00048740-exon-scaffold_146-1491911889:6315..6513Clytia hemisphaericaexon
TCONS_00048740-exon-scaffold_146-1491911889:5812..5902TCONS_00048740-exon-scaffold_146-1491911889:5812..5902Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048740-proteinTCONS_00048740-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:5812..7407 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.199875	0.0974546	0	0	0	0	0.128485	0.360859	0	0.417257	0.2025	0	0.265861	0.207074	0.283739	0.852586	0.30009	0.461374	1.06236	0.444671	0.289875	0.989737	0	0	0	0	0	0.146246	0.110923	0.113013
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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