|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048733 ID=TCONS_00048733|Name=TCONS_00048733|organism=Clytia hemisphaerica|type=transcript|length=1335bp
ttcagGTTTtcgtaactttttgagtttacaGACTAGAAACATTCTTAACT
TtctaattttcattattttgtgaGCATTTCTTAATAtcttggccatcgaa
gccttgagTTATTCTTTTAAAGGTTGCTCTTAtgaaaaacatgtattttt
gtttcaaataaacgaaCATTTTTCTGAGACAAATTAAAttcataaacatt
ttttttttttacaaagtcaCGACCGAGCGAAATGTTCAACTTCTTGAAAA
AGCTGGCTTTGGTGGTGGTGTTTCATCATCTTCCAGGAATCTATTTATTC
TTGAATGAGATGCCGGAGAATAATCATGGAGTCGAACCACTTGTGGTCAT
CGAACAAGAGGAATCAATCGAATTCAACAAATTGAAAACCACCATACCGA
CGCTATCAGGTGAATGGATTGTAAACATCAGATTCAAAATGTTTGGGAAT
GAAGTCAGTAGTACCGGTTATTGTAACATCTTACATATGACGCATGACTC
GAATGTAGCTACTTATGGGGACCGGTCGCCTTGTATTTACTATAGAATTG
ATGgtaatttgttttcaataacATCAGCTGTCAATGGAGTAATCACACAT
TCGAAATATGTTGATCCAGTACAATTCAACACAGAATACAATGTGGAGAT
CCACCAACGTTACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCA
ATGGAGAAGAAATCCACTCAACCGATAATACACAAGCTGAACAATTTCAC
GATGTTAAAGTTTACACCGGTAGCCCTTGGAGTAAAGCATGTAATGGGAC
AATCAGTCAATTGAAGATAACAAACTTTCTTTGAGAATCACGAACCGTTA
AAAGGGACGTaaataaaagtagtaaaatgtaaacattgcacgaaccacgt
gtcattaaagagaacaattcttgatatgcgtaagtcaagatgacgtcata
ttttttaacggaagcacccaaaaaagccggtttttgacctccgtgtttct
atttttagtaacagagaggggtcaaatcccgaattttttagggtgtttct
gctagaaaaatgacttacgcatgtcaagaattaaaatcacgtgtccaaaa
caaacttgtaaaacaattgaaacaatcaaaatcagccatatttgttttta
ttttttattttaacatgtgacatttgttttgattttgtatcccgctgcat
atgAATTTCGTCACTACTTTTATGgccctttaaattttcaatgacTTTTT
TTGGCGTGACGGAACTgttttacgttactgatggatTAACACATCCTTGT
CTCGGTACATAcaaccccagctggcacacaacgtt Run BLAST on NCBI protein sequence of TCONS_00048733-protein >TCONS_00048733-protein ID=TCONS_00048733-protein|Name=TCONS_00048733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MFNFLKKLALVVVFHHLPGIYLFLNEMPENNHGVEPLVVIEQEESIEFNK
LKTTIPTLSGEWIVNIRFKMFGNEVSSTGYCNILHMTHDSNVATYGDRSP
CIYYRIDGNLFSITSAVNGVITHSKYVDPVQFNTEYNVEIHQRYKSGGVY
KYSILLNGEEIHSTDNTQAEQFHDVKVYTGSPWSKACNGTISQLKITNFL Run BLAST on NCBI transcript from alignment at scaffold_146:249355..254084+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048733 ID=TCONS_00048733|Name=TCONS_00048733|organism=Clytia hemisphaerica|type=transcript|length=4730bp|location=Sequence derived from alignment at scaffold_146:249355..254084+ (Clytia hemisphaerica)
ttcagGTTTtcgtaactttttgagtttacaGACTAGAAACATTCTTAACT
TtctaattttcattattttgtgaGCATTTCTTAATAtcttggccatcgaa
gccttgagTTATTCTTTTAAAGGTTGCTCTTAtgaaaaacatgtattttt
gtttcaaataaacgaaCATTTTTCTGAGACAAATTAAAttcataaacatt
ttttttttttacaaagtcaCGACCGAGCGAAATGTTCAACTTCTTGAAAA
AGCTGGCTTTGGTGGTGGTGTTTCATCATCTTCCAGGAATCTATTTATTC
TTGAATGAGGTAGGTAATTGAAGTCTGTTGCGAAAAATTTCCTGTCAGCA
tgcacacccctgtctcacatccCCGGTGGAAGTTTTTGTCTCAGTGGGGT
AAAAATTCATATTgaattccaatggggatagaaattctattgttccaagg
ttgaaaaatacagtggggatggttttggagtgcaattttcgagcATCGAA
tttccagtggggttgaaattccagggtttttttccatcggggacgaaatt
tttgccaaattttccagtggggctgggacACAGAGGTGTTTACTTTCTTA
AACATTGTTCTAGAGAAAAGAAAGATATGTATATTGACCTCGCTGGAAAG
ATAGTTTAGAGTCGCTTGATAGATCTCTTTTGGATCAAAGCGCCTTAAAA
AAATTGGTCCATTACGAGAATTTAGAAGTAAGAAAGGTGGGGCCCAAGTT
TCAAAGAAGTATATTGTAAAAGATTTTAGTCCAGTAGTAggagaaaatga
gcatttctcgcgattgacttggtgtttttttctgattttttgcaaaatga
cataaaatggcattttttttaaatctgatggagcccgattttcggaataa
AATATTTGTGGGCAAATTTGGAAAAAGTGGTTTATTAGactttttgtgta
ttttttttctgatttgttACCTGTTAATTGTAATCCTTAAACTTAAAATG
TAAGacttcaaaatcttttaaaagaaaaagttttaaaagttcaaaaactt
taaaaagccAGTGTGAAAAAAGCATCATCATGTTTTTCAAGCTTGCGTAT
CTCTACCCTGGTAGAAAATCTTGATAAGATCTTACCAAGATCTTTTAAAG
AAACTTGGCAAGAACTTTGTAGGTTTCTTCTCAAGATCTGTGCAAAGAAC
TTTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATCTTTAAAGATCTGATAAGATTCTTTTGTAAGATGCTAATAAGATTCT
TGTCTGTTACAGCGATTCAAGATTCTTACCGAATCTTAGAACAACTATcc
ttggataaaatctttaacttaaccACGCGAGATAGTTTTGATCGGCGTTA
CATCGATTCAAGATTCTTACCGAATCTTAGGACAACTATCCTTGGTGACT
AGGTGACTAGCCTCGGTGAGCTCCAAACCCCTCACCCAAGAACTTTTGTA
GTGACGAGTAAACAGTCtaactgacgagttaggctaactgtctaGATCGC
TATTTATCCGGTATTATACTCCATCCCATTGTATTCTTCGCCCTTACTTG
TCAGCGCTAAATTACTCATTGTGGTGTATACAATATAGACTCTGTTGTGT
AGCAATCTACTGATttgccgtaattctacagatgtctgtagaaatatgaa
atctacatattttgtagaataatAATTCTACCCTGTATACCTTATTTGTA
TGGTTGTatgtaaatttgatatttcaattctttaaaaaaagtcaaaatcg
aAGATTTTATCATAACCAAAAATTTACGTGTTATTGTGTTTATTCAACAA
GATTCTTAACCcgaactttataagaaacactaAGAATCTTAAAGTTTCTT
TGCATATTTGTCAATTAAGATTTGGANNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGATCTTACAAAGA
TCTCTTAAGATTCTTACTtgttaaagatctttaaagatctttaacgatct
tttcagatcttatcaagaatttttaccagggtATGCTATGTTATTATCAT
TTGTTTTCGTTCGAACATTTTCATCTCTATCAGCATGTCTCCGACTATCT
ATTTCAGGTAGGTTCATTCAGTATTTTCagaactttttaatggtttGTCT
TAGATGCCGGAGAATAATCATGGAGTCGAACCACTTGTGGTCATCGAACA
AGGTAAAACTTGAAGTACATCTATTATTACTGACCTCAACTTTCTTGCCT
TAAGAAAAgacagatgagatggagtttttataagatactttgataattgg
tcatttgaagtaataaaaatgacgccttctttagaaaaagtaacaaaatt
gttttactaCATCACTGGTTAAAGACCAACCAAATCGAATAAGAGCTTTT
CAAAACTGCAACTTGTCTCACTGACCTCAACTTTCTTGCCGTGGGAAAAG
AAGGTCCAACGAGCGCTTATCAGAATCACAAGGGGATTGGGGACGAGATG
ATACGTTTATAGGGCTACATACATCACACAATATATTtcattgtcaggca
atatattgaataAACTAtttccttttttagtgatcttgtgtagacgatag
gattgTCTACTGAAATAGCAGAATTTTGAAGTTGAGTTTACATTTTGCAC
GACTTCAAATGTctgtaaaatgttcttaaattgttcttaaatttttggcc
tCGAAGTCTtttatactttgttcttatatgcgaaaatcttttgtttgcTA
AACACATTAGGATCTATGAATTCTAAAATACGGgatttttccttcaaatt
gtCCCGTACAAATTCACGAAAATTAATTCCAGGATTCCTGATATTTATTG
TAGAGGAATCAATCGAATTCAACAAATTGAAAACCACCATACCGACGCTA
TCAGGTGAATGGATTGTAAACATCAGATTCAAAATGTTTGGGAATGAAGT
CAGTAGTACCGGTTATTGTAACATCTTACATATGACGCATGACTCGAATG
TAGCTACTTATGGGGACCGGTCGCCTTGTATTTACTATAGAATTGATGgt
aatttgttttcaataacATCAGCTGTCAATGGAGTAATCACACATTCGAA
ATATGTTGATCCAGTACAATTCAACACAGAATACAATGTGGAGATCCACC
AACGTTACAAAAGTGGAGGTGTTTACAAATATTCCATCCTTCTCAATGGA
GAAGAAATCCACTCAACCGATAATACACAAGCTGAACAATTTCACGATGT
TAAAGTTTACACCGGTAGCCCTTGGAGTAAAGCATGTAATGGGACAATCA
GTCAATTGAAGATAACAAACTTTCTTTGAGAATCACGAACCGTTAAAAGG
GACGTaaataaaagtagtaaaatgtaaacattgcacgaaccacgtgtcat
taaagagaacaattcttgatatgcgtaagtcaagatgacgtcatattttt
taacggaagcacccaaaaaagccggtttttgacctccgtgtttctatttt
tagtaacagagaggggtcaaatcccgaattttttagggtgtttctgctag
aaaaatgacttacgcatgtcaagaattaaaatcacgtgtccaaaacaaac
ttgtaaaacaattgaaacaatcaaaatcagccatatttgtttttattttt
tattttaacatgtgacatttgttttgattttgtatcccgctgcatatgAA
TTTCGTCACTACTTTTATGgccctttaaattttcaatgacTTTTTTTGGC
GTGACGGAACTgttttacgttactgatggatTAACACATCCTTGTCTCGG
TACATAcaaccccagctggcacacaacgtt Coding sequence (CDS) from alignment at scaffold_146:249355..254084+ >TCONS_00048733 ID=TCONS_00048733|Name=TCONS_00048733|organism=Clytia hemisphaerica|type=CDS|length=1809bp|location=Sequence derived from alignment at scaffold_146:249355..254084+ (Clytia hemisphaerica)
ATGTTCAACTTCTTGAAAAAGCTGGCTTTGGTGGTGGTGTTTCATCATCT
TCCAGGAATCTATTTATTCTTGAATGAGATGCCGGAGAATAATCATGGAG
TCGAACCACTTGTGGTCATCGAACAAGAGGAATCAATCGAATTCAACAAA
TTGAAAACCACCATACCGACGCTATCAGGTGAATGGATTGTAAACATCAG
ATTCAAAATGTTTGGGAATGAAGTCAGTAGTACCGGTTATTGTAACATCT
TACATATGACGCATGACTCGAATGTAGCTACTTATGGGGACCGGTCGCCT
TGTATTTACTATAGAATTGATGgtaatttgttttcaataacATCAGCTGT
CAATGGAGTAATCACACATTCGAAATATGTTGATCCAGTACAATTCAACA
CAGAATACAATGTGGAGATCCACCAACGTTACAAAAGTGGAGGTGTTTAC
AAATATTCCATCCTTCTCAATGGAGAAGAAATCCACTCAACCGATAATAC
ACAAGCTGAACAATTTCACGATGTTAAAGTTTACACCGGTAGCCCTTGGA
GTAAAGCATGTAATGGGACAATCAGTCAATTGAAGATAACAAACTTTCTT
TGAATGTTCAACTTCTTGAAAAAGCTGGCTTTGGTGGTGGTGTTTCATCA
TCTTCCAGGAATCTATTTATTCTTGAATGAGATGCCGGAGAATAATCATG
GAGTCGAACCACTTGTGGTCATCGAACAAGAGGAATCAATCGAATTCAAC
AAATTGAAAACCACCATACCGACGCTATCAGGTGAATGGATTGTAAACAT
CAGATTCAAAATGTTTGGGAATGAAGTCAGTAGTACCGGTTATTGTAACA
TCTTACATATGACGCATGACTCGAATGTAGCTACTTATGGGGACCGGTCG
CCTTGTATTTACTATAGAATTGATGgtaatttgttttcaataacATCAGC
TGTCAATGGAGTAATCACACATTCGAAATATGTTGATCCAGTACAATTCA
ACACAGAATACAATGTGGAGATCCACCAACGTTACAAAAGTGGAGGTGTT
TACAAATATTCCATCCTTCTCAATGGAGAAGAAATCCACTCAACCGATAA
TACACAAGCTGAACAATTTCACGATGTTAAAGTTTACACCGGTAGCCCTT
GGAGTAAAGCATGTAATGGGACAATCAGTCAATTGAAGATAACAAACTTT
CTTTGAATGTTCAACTTCTTGAAAAAGCTGGCTTTGGTGGTGGTGTTTCA
TCATCTTCCAGGAATCTATTTATTCTTGAATGAGATGCCGGAGAATAATC
ATGGAGTCGAACCACTTGTGGTCATCGAACAAGAGGAATCAATCGAATTC
AACAAATTGAAAACCACCATACCGACGCTATCAGGTGAATGGATTGTAAA
CATCAGATTCAAAATGTTTGGGAATGAAGTCAGTAGTACCGGTTATTGTA
ACATCTTACATATGACGCATGACTCGAATGTAGCTACTTATGGGGACCGG
TCGCCTTGTATTTACTATAGAATTGATGgtaatttgttttcaataacATC
AGCTGTCAATGGAGTAATCACACATTCGAAATATGTTGATCCAGTACAAT
TCAACACAGAATACAATGTGGAGATCCACCAACGTTACAAAAGTGGAGGT
GTTTACAAATATTCCATCCTTCTCAATGGAGAAGAAATCCACTCAACCGA
TAATACACAAGCTGAACAATTTCACGATGTTAAAGTTTACACCGGTAGCC
CTTGGAGTAAAGCATGTAATGGGACAATCAGTCAATTGAAGATAACAAAC
TTTCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048733-exon-scaffold_146-1491911889:249355..249663 | TCONS_00048733-exon-scaffold_146-1491911889:249355..249663 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1510915933:249355..249663 | TCONS_00048733-exon-scaffold_146-1510915933:249355..249663 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1575043694:249355..249663 | TCONS_00048733-exon-scaffold_146-1575043694:249355..249663 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1491911889:252408..252456 | TCONS_00048733-exon-scaffold_146-1491911889:252408..252456 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1510915933:252408..252456 | TCONS_00048733-exon-scaffold_146-1510915933:252408..252456 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1575043694:252408..252456 | TCONS_00048733-exon-scaffold_146-1575043694:252408..252456 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1491911889:253108..254084 | TCONS_00048733-exon-scaffold_146-1491911889:253108..254084 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1510915933:253108..254084 | TCONS_00048733-exon-scaffold_146-1510915933:253108..254084 | Clytia hemisphaerica | exon |
| TCONS_00048733-exon-scaffold_146-1575043694:253108..254084 | TCONS_00048733-exon-scaffold_146-1575043694:253108..254084 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:249355..254084 + |
Blast
The following BLAST results are available for this feature:
|
