TCONS_00048731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048731
Unique NameTCONS_00048731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1208

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048731 ID=TCONS_00048731|Name=TCONS_00048731|organism=Clytia hemisphaerica|type=transcript|length=1208bp
ATCCAGCGTTATGATGATTGTCAAACAACCTGTATGTTTTATCGCACCAT
TAATTTTGATTGCTTACACAACAACCACTGTCATTGGATCATCAAACAAC
CAATCAGAAGTCGAGTTAGGAATTACGTCAGTTCCTTCTTCGATTTCAAC
CTCTATTGTGACTTCATCAAGCTTGGGCATAGCAGAAGCAACAACCGGCC
AATCTAAAATGTCTGATCGTCAAACAGACACATCGATGCAAACGAACCAG
ATCAATACATCATCACTAACCAACACTGACAATCCCTCAACAGCAGTGAC
CAGTTCTCAAGTAAAATCTACGACTATTTCACCAGAGGCGCTGACCACAG
AAACCAGCTCTCAAGTAGGTTCTACGACTATTTCACCAGAAACACCAACC
ACAGCCACGCGACAAATTGTTACTCAAAGCATATCACCAGAAACCAGCTC
CCAAATGGAAACTACGACATCAACAGCATACCTCCTAGAATCATCAGATG
AACCAACCACCACAGCTACACAGCAAACTGTGACAAGATCTATACCTGAG
AATCTAACAACCAACCTCCTCACCTCAACAACTTCTTCGGAGTTTCAAGA
AATGCTTTTGCAATTCTCTTCCAAAACAAACACCATAATGGTAACAACTT
CAACAATGAAAGATTTATCACAATCAATCAACACCAACCAGGTTTCTCCA
ACAGAATCGACATCTGAAGCACTACCGAACACACCAGAACCAACCATCCC
CAGTGAGGTGGATGCCAACCATATCACTTCAACTCAATCATCTTTTCATG
TTTCAAACATAATGGAATACAGTTCTCCAGGGAATGAAGTAAAGACATCT
TCCACTTCAATCACTCCATCATTTATAACCTCCCTCGCGGATCAGCAGAC
AACAACAATATCTATGATTTCTCCATCAAGCACAATTTCTTTTGTCGGTC
ATCACGGATCAAAGACTTCAACAAAACCAATAGTTTCATCGAGCAACAAT
CACCTTGTCGAGCAGCAATCCTCAATCACTCCCACCAATTCCCTGGTTGG
ACGGCATACTACAAACACTCCTCTTCTTGCCGAGCAGCAATCCTCGACCA
CTGCAATGATATCGTCTTCAAGAACGAATTCGCTGGTTGGACAACACACC
ACAACCTCGTCTTTATCTGATATGAATATTCTTGAAGAGCACCAATCCAG
AACCAGCT
Run BLAST on NCBI

protein sequence of TCONS_00048731-protein

>TCONS_00048731-protein ID=TCONS_00048731-protein|Name=TCONS_00048731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
SSVMMIVKQPVCFIAPLILIAYTTTTVIGSSNNQSEVELGITSVPSSIST
SIVTSSSLGIAEATTGQSKMSDRQTDTSMQTNQINTSSLTNTDNPSTAVT
SSQVKSTTISPEALTTETSSQVGSTTISPETPTTATRQIVTQSISPETSS
QMETTTSTAYLLESSDEPTTTATQQTVTRSIPENLTTNLLTSTTSSEFQE
MLLQFSSKTNTIMVTTSTMKDLSQSINTNQVSPTESTSEALPNTPEPTIP
SEVDANHITSTQSSFHVSNIMEYSSPGNEVKTSSTSITPSFITSLADQQT
TTISMISPSSTISFVGHHGSKTSTKPIVSSSNNHLVEQQSSITPTNSLVG
RHTTNTPLLAEQQSSTTAMISSSRTNSLVGQHTTTSSLSDMNILEEHQSR
TS
Run BLAST on NCBI

transcript from alignment at scaffold_146:205482..206797+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048731 ID=TCONS_00048731|Name=TCONS_00048731|organism=Clytia hemisphaerica|type=transcript|length=1316bp|location=Sequence derived from alignment at scaffold_146:205482..206797+ (Clytia hemisphaerica)
ATCCAGCGTTATGATGATTGTCAAACAACCTGTATGTTTTATCGCACCAT
TAATTTTGATTGCTTACACAACAACCACTGTCATTGGATCATCAAACAAC
CAATCAGAAGTCGAGTTAGGAATTACGTCAGTTCCTTCTTCGATTTCAAC
CTCTATTGTGACTTCATCAAGCTTGGGCATAGCAGAAGCAACAACCGGCC
AATCTAAAATGTCTGATCGTCAAACAGACACATCGATGCAAACGAACCAG
ATCAATACATCATCACTAACCAACACTGACAATCCCTCAACAGCAGTGAC
CAGTTCTCAAGTAAAATCTACGACTATTTCACCAGAGGCGCTGACCACAG
AAACCAGCTCTCAAGTAGGTTCTATGACTATTTCACCAGAGACACCGACC
ACAGAAACCAGCTCTCAAGTAGGTTCTATGACTATTTCACCAGAGACACC
AACCACAGAAATCAGCTCTCAAGTAGGTTCTACGACTATTTCACCAGAAA
CACCAACCACAGCCACGCGACAAATTGTTACTCAAAGCATATCACCAGAA
ACCAGCTCCCAAATGGAAACTACGACATCAACAGCATACCTCCTAGAATC
ATCAGATGAACCAACCACCACAGCTACACAGCAAACTGTGACAAGATCTA
TACCTGAGAATCTAACAACCAACCTCCTCACCTCAACAACTTCTTCGGAG
TTTCAAGAAATGCTTTTGCAATTCTCTTCCAAAACAAACACCATAATGGT
AACAACTTCAACAATGAAAGATTTATCACAATCAATCAACACCAACCAGG
TTTCTCCAACAGAATCGACATCTGAAGCACTACCGAACACACCAGAACCA
ACCATCCCCAGTGAGGTGGATGCCAACCATATCACTTCAACTCAATCATC
TTTTCATGTTTCAAACATAATGGAATACAGTTCTCCAGGGAATGAAGTAA
AGACATCTTCCACTTCAATCACTCCATCATTTATAACCTCCCTCGCGGAT
CAGCAGACAACAACAATATCTATGATTTCTCCATCAAGCACAATTTCTTT
TGTCGGTCATCACGGATCAAAGACTTCAACAAAACCAATAGTTTCATCGA
GCAACAATCACCTTGTCGAGCAGCAATCCTCAATCACTCCCACCAATTCC
CTGGTTGGACGGCATACTACAAACACTCCTCTTCTTGCCGAGCAGCAATC
CTCGACCACTGCAATGATATCGTCTTCAAGAACGAATTCGCTGGTTGGAC
AACACACCACAACCTCGTCTTTATCTGATATGAATATTCTTGAAGAGCAC
CAATCCAGAACCAGCT

Coding sequence (CDS) from alignment at scaffold_146:205482..206797+

>TCONS_00048731 ID=TCONS_00048731|Name=TCONS_00048731|organism=Clytia hemisphaerica|type=CDS|length=2412bp|location=Sequence derived from alignment at scaffold_146:205482..206797+ (Clytia hemisphaerica)
TCCAGCGTTATGATGATTGTCAAACAACCTGTATGTTTTATCGCACCATT
AATTTTGATTGCTTACACAACAACCACTGTCATTGGATCATCAAACAACC
AATCAGAAGTCGAGTTAGGAATTACGTCAGTTCCTTCTTCGATTTCAACC
TCTATTGTGACTTCATCAAGCTTGGGCATAGCAGAAGCAACAACCGGCCA
ATCTAAAATGTCTGATCGTCAAACAGACACATCGATGCAAACGAACCAGA
TCAATACATCATCACTAACCAACACTGACAATCCCTCAACAGCAGTGACC
AGTTCTCAAGTAAAATCTACGACTATTTCACCAGAGGCGCTGACCACAGA
AACCAGCTCTCAAGTAGGTTCTACGACTATTTCACCAGAAACACCAACCA
CAGCCACGCGACAAATTGTTACTCAAAGCATATCACCAGAAACCAGCTCC
CAAATGGAAACTACGACATCAACAGCATACCTCCTAGAATCATCAGATGA
ACCAACCACCACAGCTACACAGCAAACTGTGACAAGATCTATACCTGAGA
ATCTAACAACCAACCTCCTCACCTCAACAACTTCTTCGGAGTTTCAAGAA
ATGCTTTTGCAATTCTCTTCCAAAACAAACACCATAATGGTAACAACTTC
AACAATGAAAGATTTATCACAATCAATCAACACCAACCAGGTTTCTCCAA
CAGAATCGACATCTGAAGCACTACCGAACACACCAGAACCAACCATCCCC
AGTGAGGTGGATGCCAACCATATCACTTCAACTCAATCATCTTTTCATGT
TTCAAACATAATGGAATACAGTTCTCCAGGGAATGAAGTAAAGACATCTT
CCACTTCAATCACTCCATCATTTATAACCTCCCTCGCGGATCAGCAGACA
ACAACAATATCTATGATTTCTCCATCAAGCACAATTTCTTTTGTCGGTCA
TCACGGATCAAAGACTTCAACAAAACCAATAGTTTCATCGAGCAACAATC
ACCTTGTCGAGCAGCAATCCTCAATCACTCCCACCAATTCCCTGGTTGGA
CGGCATACTACAAACACTCCTCTTCTTGCCGAGCAGCAATCCTCGACCAC
TGCAATGATATCGTCTTCAAGAACGAATTCGCTGGTTGGACAACACACCA
CAACCTCGTCTTTATCTGATATGAATATTCTTGAAGAGCACCAATCCAGA
ACCAGCTCCAGCGTTATGATGATTGTCAAACAACCTGTATGTTTTATCGC
ACCATTAATTTTGATTGCTTACACAACAACCACTGTCATTGGATCATCAA
ACAACCAATCAGAAGTCGAGTTAGGAATTACGTCAGTTCCTTCTTCGATT
TCAACCTCTATTGTGACTTCATCAAGCTTGGGCATAGCAGAAGCAACAAC
CGGCCAATCTAAAATGTCTGATCGTCAAACAGACACATCGATGCAAACGA
ACCAGATCAATACATCATCACTAACCAACACTGACAATCCCTCAACAGCA
GTGACCAGTTCTCAAGTAAAATCTACGACTATTTCACCAGAGGCGCTGAC
CACAGAAACCAGCTCTCAAGTAGGTTCTACGACTATTTCACCAGAAACAC
CAACCACAGCCACGCGACAAATTGTTACTCAAAGCATATCACCAGAAACC
AGCTCCCAAATGGAAACTACGACATCAACAGCATACCTCCTAGAATCATC
AGATGAACCAACCACCACAGCTACACAGCAAACTGTGACAAGATCTATAC
CTGAGAATCTAACAACCAACCTCCTCACCTCAACAACTTCTTCGGAGTTT
CAAGAAATGCTTTTGCAATTCTCTTCCAAAACAAACACCATAATGGTAAC
AACTTCAACAATGAAAGATTTATCACAATCAATCAACACCAACCAGGTTT
CTCCAACAGAATCGACATCTGAAGCACTACCGAACACACCAGAACCAACC
ATCCCCAGTGAGGTGGATGCCAACCATATCACTTCAACTCAATCATCTTT
TCATGTTTCAAACATAATGGAATACAGTTCTCCAGGGAATGAAGTAAAGA
CATCTTCCACTTCAATCACTCCATCATTTATAACCTCCCTCGCGGATCAG
CAGACAACAACAATATCTATGATTTCTCCATCAAGCACAATTTCTTTTGT
CGGTCATCACGGATCAAAGACTTCAACAAAACCAATAGTTTCATCGAGCA
ACAATCACCTTGTCGAGCAGCAATCCTCAATCACTCCCACCAATTCCCTG
GTTGGACGGCATACTACAAACACTCCTCTTCTTGCCGAGCAGCAATCCTC
GACCACTGCAATGATATCGTCTTCAAGAACGAATTCGCTGGTTGGACAAC
ACACCACAACCTCGTCTTTATCTGATATGAATATTCTTGAAGAGCACCAA
TCCAGAACCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030972XLOC_030972Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048731-proteinTCONS_00048731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048731-exon-scaffold_146-1491911889:205482..205849TCONS_00048731-exon-scaffold_146-1491911889:205482..205849Clytia hemisphaericaexon
TCONS_00048731-exon-scaffold_146-1510915933:205482..205849TCONS_00048731-exon-scaffold_146-1510915933:205482..205849Clytia hemisphaericaexon
TCONS_00048731-exon-scaffold_146-1575043694:205482..205849TCONS_00048731-exon-scaffold_146-1575043694:205482..205849Clytia hemisphaericaexon
TCONS_00048731-exon-scaffold_146-1491911889:205958..206797TCONS_00048731-exon-scaffold_146-1491911889:205958..206797Clytia hemisphaericaexon
TCONS_00048731-exon-scaffold_146-1510915933:205958..206797TCONS_00048731-exon-scaffold_146-1510915933:205958..206797Clytia hemisphaericaexon
TCONS_00048731-exon-scaffold_146-1575043694:205958..206797TCONS_00048731-exon-scaffold_146-1575043694:205958..206797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:205482..206797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0402099	0	0	0	0	0	0	0.0370686	0	0.0709549	0.0236188	0	0	0	0.213277	0.491855	0	0	0.995751	1.10537	0.651501	1.11058	0.686322	0.44238	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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