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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=transcript|length=1322bpRun BLAST on NCBI protein sequence of TCONS_00048689-protein >TCONS_00048689-protein ID=TCONS_00048689-protein|Name=TCONS_00048689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp MGDSDEDRRGGRRDKFRGERNDYDNRRPAPRGYNDRGRGDRGGWQDRKRDRun BLAST on NCBI transcript from alignment at scaffold_145:396311..402735- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=transcript|length=6425bp|location=Sequence derived from alignment at scaffold_145:396311..402735- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_145:396311..402735- >TCONS_00048689 ID=TCONS_00048689|Name=TCONS_00048689|organism=Clytia hemisphaerica|type=CDS|length=7608bp|location=Sequence derived from alignment at scaffold_145:396311..402735- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00048689 vs. Swiss-Prot (Human)
Match: SRRT (Serrate RNA effector molecule homolog OS=Homo sapiens GN=SRRT PE=1 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 2.038e-29 Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 3
Query: 1050 VSIFIRNAPSNILRSDIVNVCKPYPGFLRVAMSDAAPERRYSRRAWVSFGHDTNIKDVCWNLSNIRVRELELSPSVNRDVTNRIRPINGM 1319
S+F+RN NI R++I+++CK YPGF+RVA+S+ PERR+ RR WV+F NIK++CWNL NIR+RE ELSP VNRD+T R+R ING+
Sbjct: 421 CSLFMRNIAPNISRAEIISLCKRYPGFMRVALSEPQPERRFFRRGWVTFDRSVNIKEICWNLQNIRLRECELSPGVNRDLTRRVRNINGI 510 HSP 2 Score: 115.931 bits (289), Expect = 1.652e-27 Identity = 54/122 (44.26%), Postives = 82/122 (67.21%), Query Frame = 2
Query: 368 PHLMSFKDFVSQQEDDINEEQAVQRYQEYKVEFKRTQINDFFVIKKKDEWFEERYHPVKGQKRQSFIRHGHRRRLRIFLDLWEQGFIDELSLQITYSPAVLKLLDRVVILLEGGTEEDLKAL 733
P + +FK+F+ +D ++E +AV+RY +YK++F+R Q+ DFF+ K +EWF +YHP + KR+ R + RLR+FL L E G+ D L L I + A++K+LD VI +EGGTE DL+ L
Sbjct: 147 PVMKTFKEFLLSLDDSVDETEAVKRYNDYKLDFRRQQMQDFFLAHKDEEWFRSKYHPDEVGKRRQEARGALQNRLRVFLSLMETGWFDNLLLDIDKADAIVKMLDAAVIKMEGGTENDLRIL 268 The following BLAST results are available for this feature:
BLAST of TCONS_00048689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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