TCONS_00048684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048684
Unique NameTCONS_00048684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1930

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048684 ID=TCONS_00048684|Name=TCONS_00048684|organism=Clytia hemisphaerica|type=transcript|length=1930bp
ATTAGTATTCGCAGTTTGATAACTGGTTTTATTTTATCTGATTGTTGGAT
AATGCATAATTTCTGTTTAATATTTACAgctttatcaataaaaaatatat
aataataaaaaatttgaatacatTTCTCGTGGACTAAGTGACAGaCATGT
GGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAGCATTT
CCACGGCATCACCGGTTACGTCGACAAGCGGAACAAGTCGGAACAACTCG
ATCATGTAAAAACACATACGACCAGTGTCCACAGTGGAAAGGCGAAGGAA
TGTGCTCGAGCGATCAGTACAAAGAGTACATGCAAACTGTCTGCCCAGTC
ACTTGCGAATTCTGCAAAGAGAACAACCATGTCAGAGATGAGATTGAGGA
GCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGAAGATG
GAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAGAAGAA
TCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGAAATGA
TGAAACAACGGCAAAGAAAGATCAAACAGAAACAGAAGAGGATGAGGAAT
CAGGACAAAGTGAAGAAtcgaaagaagaagatgaagagcCAGAGAAAGAT
GCAGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCcaaacaaga
aaaacaagcCAACAAATTCAACAAAGGTGAAATTAGTGTTTTGTTGAGAC
AAGGATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATG
TTGTCCGGTAATGTCGTTCACGATtttgaaaaagccttgaaaGTCGAGGT
TAGCGACGTTTCATTCACTGAGGGTAGTATCGATGGCAACCCAAAACAAA
CTGGAAAAACAAAGATGTCATTCACAGTGTCGGGAAGTGATCAAAAAGTG
TTGAAGAAACTCACCAAACTTGTGAATACAGATCAAAGTATCAACGGATT
GAGTGTGTACTCTGGATCTTTGGAATACGATGATGAACGCAAATAAAGAG
ATCAATGGATCAATCTTTGCTTAAAAGTTGAAAGTATCATGAAATGAGGG
AGGTTTTctatatttatgtttttctaaaaagtgAACATTTTGTATCAGTT
TTGCATTTTTGGTTCAGCCCAGGCTTTGCTACTTTTGGTGTTTTCAGGGC
AAATTTAATATGTAAATTTTTCGCGGAACGCTGACTCGTGAAAATTAATC
CGGTTAAAAGTACCATAagaaaaatttgttgttttgaaggaattttaatc
aaaaatatatttttcttagtTTCCAAAATGATATGTTTATTTATGTTTGT
TTCGtcttttttcgttaaaaaagtaatattataatattttttgtttgagc
CTATATAGATATTTAatacatatttaaaaaaaattgtaaatacagaatga
aatatgatttataagaaatatgatgaaaaaaaaatcacaaaaaaaattta
aaaagttcaagGAACTCCAGCCCCTTGCTTTGTGAAgcaatgggctgttc
cattaaaaaaccatacagggggtgggtGGTTGATGagccttttcaagtca
aaaaaattattgaaaatgtgtggataccccctgataaatgggaaaatttg
caaaaaaaNGCTCTGGTTAAATAGACActttaaaataaatcataatagtt
aatacaccgtttaacagtctcgcctttagatatttgaacatgatattaat
gacaattttatgtatctctcctgaaaatttcacaaaaattcatctagagg
aaaagaagttatgattaaaaggagttcTTTAcataccatttctctgctgg
gttttcttatgagaactggatgtttacctaccattttttacgggggagag
tgaagtttcccgtttttgccaaaatcaaaa
Run BLAST on NCBI

protein sequence of TCONS_00048684-protein

>TCONS_00048684-protein ID=TCONS_00048684-protein|Name=TCONS_00048684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=299bp
MWRILVFVTLAVLSCQAFPRHHRLRRQAEQVGTTRSCKNTYDQCPQWKGE
GMCSSDQYKEYMQTVCPVTCEFCKENNHVRDEIEEPEDTSMKLLEPSEEE
DGGEPATEDAGEEEAKEESGSGSGTSDEESGSGNDETTAKKDQTETEEDE
ESGQSEESKEEDEEPEKDAAKPVQSAKPVQSAKQEKQANKFNKGEISVLL
RQGFKSDFSNKDSAPYRMLSGNVVHDFEKALKVEVSDVSFTEGSIDGNPK
QTGKTKMSFTVSGSDQKVLKKLTKLVNTDQSINGLSVYSGSLEYDDERK
Run BLAST on NCBI

transcript from alignment at scaffold_145:304789..313902-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048684 ID=TCONS_00048684|Name=TCONS_00048684|organism=Clytia hemisphaerica|type=transcript|length=9114bp|location=Sequence derived from alignment at scaffold_145:304789..313902- (Clytia hemisphaerica)
ATTAGTATTCGCAGTTTGATAACTGGTTTTATTTTATCTGATTGTTGGAT
AATGCATAATTTCTGTTTAATATTTACAGCTTTATCAATAAAAAATATAT
AATAATAAAAAATTTGAATACATTTCTCGTGGACTAAGTGACAGGTAAGC
TAAAATTTACTGTTTCATGGGGATTCAATCGGTGATATACAGTAGAGTTT
CCATCTCGTTACCTTGCAATAGTCATAGTAGATCCTAAAGAATAAAATAA
TTACTTAAAGAACAACCAAGTTAAAATGACATCTGTAGCACAACGTAAAG
TATTTGATTCTCTTCTGATGTGGATATGCGATCTAGGAATCAACTATGAG
CATGCGTGTCACGTGTGGTTTGCCATTTATAAACCGTTCTTCAATAGAAG
TCCGTCAATTTCGAATTTAACGACAATACCACCATAAACACCCGACAATG
TCAGGGCTACATAGCTTGTTCGTCTCTCCTTTTGTACAATTATCCTCCTT
TTCGTTTCCGTCTTTTAAAAGGCCCTGGTGAAAACAAAATAAAACTTTTA
GAAATTAAATGATAAACAAAGATAACCCTCATAGAAAAACTTCAACAACG
GTACAGACCCTTTTTACGCCGGCCCTTATTGGCCCACGTAAAATAGGCAG
AAATTTTAAATTTTTAACCTAAAAGCACACTTAATTGTTGACCTCTTATA
CTCTATTTAACAGGATAAGTAATAAGTAATAGAGTGTGAGAAGAAAACTA
TGATCTTGTAAACTTTATAAATTTTCAACAGTTTACCCACAAACCGAAGC
ACGACATTTAATGTCAATTCAAGTCAATATTTTTTATTTTGAATCCTATA
CAGTGTTTCTGGTGTTATGTATTTTTTAGCTTACGGTCGTAAACATGATA
AAGGGCGGGCATTAAGTTAGGATCGGCGTAGGGTTGCCACTTATTTACAC
GTTTTTTTTATTTTTAGAAACACACTTTTGAGAAACATGAGGCTCAGAAT
GCCTAAAAACTAAGAAACATCTAAGAAACATGCCGAGGCTGAGAATGAGA
AAATAACATTTTTTAATTCAGTTTTTTTAATAACCTTCCAATCAAGGCAA
AGTTCCAGAAAAATACTTGCATAACAGTTAGAAACACTTGAGAAAGTCAG
AAAATCAATATAGAAGATGGGAAAGTACCGTAGATTAGTCTATTACACTT
TTTTTTTTTATAAGAACAATTTTATAATAACAATGAGGCTCAAAAATGCC
AAAAAATAAGAACAATTTAAGAACAATCCTGAGCCTGGAGTTGCTGAGTT
TTAGGTAAAATAAGGGCCAAATTAATNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAA
GAACAGGATAAGAACAATTTGAGGCTCGAAGTGCCAAAAAAATAAGAACA
GCCGAGCCTCAACAAAAATTTACTGGTTCTTATAAAAAAAAAAGTGTAGA
CTATAGTATTGTCGACATACGTCCTTTAAGTTTGATAAAGTTTAGAAACA
TGTGAGAAACATTTAAGGCTCAAAAGGCCGATTTCTTAAGAAACATTAAG
GCTGCTTGGTAAAAACTAGTTTCTTAAAAACAAAGACGTGTACTCTGTTA
TTTTTTTTCTCTAGACATGTGGAGGATTTTGGTATTTGTCACACTCGCTG
TTCTGTCTTGTCAAGGTAAGAACATATTTTTCTTTATGTATCAGAACAAT
AAGAACATGAGGTTGAAATTCAACAGAAACTAAATAAATTAAGGAAAATC
TCTGGAACCTCTATGACAGTACGCATTAAAGCCTATTTCATGCTCTTAAA
TTAGAATTTAACCTTCAAAATTGCCCGTGGAAACCAAAAAGTGTCTGTTG
ATTAACCGATCACAGGCTGTTATTTGCTACTCTGTTTTTTAACACGCAGA
AATTCGCAAACTTTGACTGTTGACTCTCTCTTTTTAGCTTTTTTGCCTTT
TTTTGTGATTTTTGATCGATTTGGTTATTGTTCAAAAAACATTTTCAACA
ATTCACGAAAATAGTATCAAGGTTCTTTACGAATCTCAATTTTTTAAACG
AAAACTGAATTTATTCATTACGTAATGTTTTGTACGGAAGCACGCAAAAA
AGCGTTTCGTTTGTCACCAGTTTTATTGTTTGAATTCAAAATTAGTGGCA
AACATTAGATTTTAGGAGCTAACGTATAAAACATTACTTTATGAATATGA
CGAATCAATCTTGTTTATTTACCAAAGCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GGTAAGCAGTGAAGACGCCGGAAGGCTTTTCAAATATACACCAGTCGGTT
CTTGCTTATTCAAACTTTTATTATTTGACTCTTTTTGTTATCAAGATTAA
ATCCAAATTTTCAAAAAGCTTTTTGATTTAAAATCCCAAAATATAACATC
CGACACCATCTACCTTTGCTGCTCCACATAGTAATACTAAAGGCTTTCAA
CGAGAAACGAAATGGCATCACCGGCCTTCACTATACAGTACCACTACTAC
TGAAATCATGCATCACTTAGTTGTTTTTGACGGAAATTTCGCTCAGTGAA
GCATAGAAAAAAAATCCAACAGACAGACACTAGACGCTAAGCAAATCCGA
ATGACAAACACACTGACAAATAACAATTTCATCGCAAGATTGGATTGGAC
AATGACAAATTACTATACATTAGACATACAGACAAAACAGAGAAAACGAA
CCGACCACGACTAACCGACAGATCATTTCATTCGACTCCATCGCATCCTC
ATATCATAATCGGAATCATTCTAACACGATAATACTGACCGATGCTCTAT
TTCTTCCACAGAAACATCTGATGCAGCACCTGAGAGTCCGTCTTCAGCAG
CAAATAGTGAGCAAGCACCCATAGCTGAAGGAACCGCTCCCAATCCCGCT
CCGTATGCCGGCCCACCCCAAACCAGTGGCGAAACGTCGAATATAGACAC
GTCAAAATCAACAGAAGCGCAACAAGCAGTCCCAGTTGAGAGCAATACGT
CGCAAACACCACAAACGGCTGATATCTCAGCAACAGCTAAAGAAGCAGAG
AAAGAACACGAAGAGTATCAACAAATGCTCAAGACTTATTACCAAAGCGT
CAAAGAGCAACAAGAAGCTTACCGCAAGTCCATAGCAGAACAGTATCCAG
AATATGCCAACAGTTTAGAGCCTTCTTCCAGTGCAGTAGACGGTATCGTC
GCCGCCGCCCCTCTACCTTCAACCAGCGAGGGCAACGCTTTACCTTCGAG
TGAAACAAGCTCCCAGGCTGTATCCTCCAGTACCGAGAGTACTCCTCAGT
CTGCTCCAGTAGTAGAATCGAGCACGTCGTCAGCTACTGCTGAAATTCCG
AGTTCGTCGTCTACTCCTGAGACTACAAGTACCGATTCAACCTCACAATA
TGCAGCCGCTGTTTCCGCTTCATCAAACCCTGCTCAAGAAACACCTGCTG
TCGAGCAAGCACAGACACAACCAGCTGAAACACAGTCGACAGTTTCCCAA
TCACAAGAAGCTGCTTCTACACCAGAGACAGCACCAGTCAGCCAGGAGAC
CCCTACCTCCCAGGAGTCAACAACAGTAGCTGCATCAGCGCCCGATACCA
CTTCTCAAAACCAAGCAGCAGTCTCCCCTGTTAGTCCATCACAACAGGCC
CCGGCCCCAGTAGCCCCACAGGAAGGTGCCACAGCCGCAGTACCTCCTTC
TAACTTACCAAGTAACGTTCCCAATATCATAGCTATTGCCATGGGATCTA
AGCAACCCATAGCTGTTTTGTCTGGTGGAGGACACTTAATGGGGCAGCAA
CATCCTTACAACCCAAAGAACACATCAAGTGCTTTGTATAGCAAAGAAAA
ACTGAAAACGAAGAAGAAGAATAAGCAAGACGATGAAGAACAAACCGATG
AGAAATTAACAAGCGAGTCTAAACACTTAGAACAAGATATGAAGAAAATT
AAACAGAAAAACAAATCGGCAGCACAGAAACTGTCAAAAAATAAGCCATT
GAAAGGTGCTGATATGAAACATGAACACGATAAGAAAATCGGACATGCAA
AATCGAAGAAGGAGAAAATGAAGAATAAGAAAGAGAAGAAAGTGAAAGCG
TTGTTGAAGATGGATGAAGAGGAGGACGAAGACATGGCTCACGTTTCTTC
TTCGAAAAATCTCGATATCGAAGAAGAAAGCCCTATGCAGAAATCAACAA
CAGCAAATACAGAATCGAAAAGTATTGATGTGGAAGAAGAGAGCCCAATG
CAGAAATCAACAACGAATACAGAATCGAAAAGCATCGATATTGAAGATAT
TATTGAGAGCCCGATGCAGAAAAGTGTAGCAGAGACACCAGTGCAAAAAT
CCTCTTCTGCAGGGATTGCAACTGGGACTGTGATTGACGATGAAGACGAT
GTTAATGACAGCGAAGAAGATTTACAGGAGTATGATAGTAAACGTACCAA
GATGACAACTCCAAAGATTATAAATGTTGCACCTAAAACTAGTGTGAATA
CTGGTAAAGACAGTTCCTCGAATACTGAGAAAAAGTTGAACCAGGTGGAT
TCCGTTTCTAGTAAAACACTGAGTTCGTTAACGGATGGTGAATCTACGAT
GGCGAAGAAAAGTGAAGGAAGTGGGTCTGGTTCTGGAGCATCAGATTTGA
TGTCTGTAGCAACAAACAATGATGACGCTGGTGAATCGGGTGATAGTAGT
AGTGGTTCTGGCGATGCTGGAGAAGGTGATGCCAATTTAGAAGGCGATAT
GAAGGAGTTAGCTTTTCTAACTGGTTTAAATTTCGAAGATTCTGATGCAG
GGGATATAGATAATGACTTAGAAGATGCTGAATTAAGAAATTCTGATTCT
AATCCTTCTACTAAAGAGAACAACCATGTCAGAGATGAGATTGAGGAGCC
TGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGAAGATGGAG
GTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAGAAGAATCT
GGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGAAATGATGA
AACAACGGCAAAGAAAGATGTGAGTGTATATGATAATTGATTTCATTAAT
TTAGGTTTTTAGGATATTGCATCAATTAAAATGAAGTGTCTGCTCGAAAT
TAAGCCTCAGTGCGGTCGCAAAGTACTTAAGGCTCGTTGGTAGTTCATTA
GCCTTAAAGATCATTTTCTAAGCAAAAAGAATAGAATTCTGAAATGCCTT
ATTATGAAGTGGTTAAGGCCGGTCTCCACTTTTTGCGCGAAATGGGCGAC
AGCTTTTTTCTTAACCTTATTTACCTGAAGAAAAGATTAAGCCATAAAAA
AGATTCGCGGCGAACAAAAAAAAAGTTGAAGGAAGTTTTCATTCGTTACG
TCAATTTCGACCAATGGAATTGCTTCCTTTTTCAACCGACCAATGACCTT
ACAAAAGCGTCAAAAAATTTTCGCCTATGTCGCGCGAAAGTGGAGACCAG
CCTTTAGTCATTGAAAATTTTATGTATATTCGCTTTGCAATCCGCCTTGC
TTTCATCTTTGCCTGCAGGAAAGTTCGGTGGCGTGAATGAAGGCTAGAGA
GGAAATTCATCCGTCGTCGTGATTTATCTATCGTTACTTAATCTCGCTAA
TGTCTCAAAGCCAACAATAAGAATGTTTCAAATCAAAGTAAATATTTAAC
AAAGTACATTTTCTACAGCAAACAGAAACAGAAGAGGATGAGGAATCAGG
ACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGCAG
CCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAAAA
CAAGCCAACAAATTCAACAAAGGTACAAAATTATTGGGCTATTCTAAAAA
AAAAGTTTTACCCCTCCCCGATGTTGATACTCTNGCAATTATTGGGCAAT
TCTAAAAAAAAGTTTTACCCCTCCCCGATGTTGATACTCTGTAGCAGGCA
GCGTGTATCTCATGTATAACTAGCGTAGATATTGGGTCTTTTGCAAAAAA
CCATTTTGAGGAAGCCTCGATTCCTTCCAACCAAGTGGGTCAAGTTGTCA
GTGAAATTTTGTGAAAATGGTCTTATAAAATTATCAAAGGGGAGGTCTCT
TAAAATCCAAATTTGTCTAAGACAACCTCGCAAAAAAAGACGAGTCTTAA
TTTCAATTAGAATCTAAGCTCGACCGAGACCTCAGAAAAGTCGAGGCTAT
CCAAAATTTACTTGTTTAGTCAGGGCGTTTTGTTCATCCATTATAGAAAG
TTTAGAGTAAAGAAAAGTCAGTGTATGAATCACAGGACGTAACTTTCCTT
CCCACATTCTTCATATTGCAGGTGAAATTAGTGTTTTGTTGAGACAAGGA
TTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGTC
CGGTAATGTCGTTCACGATGTAAGTTTTAATTTATTTTCTTCGGACAGAA
AAACAGATAGACTAACTTGAATCCTATCAATCTTCAGGAAAAATCCAAGC
AACAAAACTTAGTCGGCCTTAATTATTAGTTGGCCCTAATTTTAGTCACC
TCATCAAAATTTAGTCACTAAGGGCCGACTAATAATTAAGACCGACTAAA
AATTTGGGTCATTACTAAATTTACAAGCGGATAGAAAATAAGAGAAAGCT
TAAAATACTGGAAAATAAAGAAAGCTTAATCATAAACTTTTAATTTGGCC
CAAATTTTTAGCCAGCTTAAATTTTAGTCGGCCCAAATTTTTAATCGGCC
ATAATTTTAGTCATCAAGCCAAAATCTAGTCACTTAGGGCCGACTAAGTT
TTGGCCGATAAGGTAATGCTATATGTAGTACGCCCAGCCTCACATTGATA
ATGGCTCCCTTTTAAACATACTGAATTTTCGCGAATTTTCGCGCATGTGT
GAAATATTAACTTTGCAAAACTCAACTTTCTTGCACTAAATTTATCGTCA
ATCAGAACTCAAAATTGTACGTAACTTAGTACACGTATAAATAATCTCCA
CAACATTCAATGCGAAATATCTAAATCTTTATTTTCCAGTTTGAAAAAGC
CTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGGTAGTATCGATG
GCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCACAGTGTCGGGA
AGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTGAATACAGATCA
AAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGAATACGATGATG
AACGCAAATAAAGAGGTCAGTGAAAAAAAAAAGGAATTCTATTTCTTGGT
CAATTAATGGTTTTAAAGATTGAGCTGTTCCAGACCCTAGGGTAATGCAC
CTAAACGTCACAGTTGTTGAAAGGTTGGGTTGTTCCATTTTATATCCATA
CAGGGCACGAACCTTTTCAAGCTTAGGAAAATTCTTGAAAATAACCCTGG
AAAATTGGAGAAATTCGCAAAAGAAAACTCTTGGAAAAAATTCACCCCAA
AGTATGGATATTAAATGGAATGGCTCATTGCAGCCTTTCACAGTGAATAT
GAAGTTTCGAACTTTCGAAACGAATCCCCCTTTACGGTTAGAGATTTTCA
AAATTCTGTCAGGATACCTAAAACCCTCTTAACGCAAGTTGGTCTAATGT
CGACATCCCTCTTCTAATTTCGACATCCTTCTTTAGAGATAGGAATAATA
GGAAGGTCGGAATCACTGATGGACTCCTCAAATGATTGCTAATCAAAGAA
AATTAGTTTCAATCTGCGATTCCGACCTTCCTATTATTCCTATCTCTGAA
GAAGGGTGACGAAATTAGAAGAAGGATGTCGACATTAGACCAACATACGG
TAAAAATATGTTGAAGGAACAGCTTTGATGGATCTACAGTTTATATAGAA
TTGCTAGAATTCAAATCTCATTTTTATATTTCAGATCAATGGATCAATCT
TTGCTTAAAAGTTGAAAGTATCATGAAATGAGGGAGGTTTTCTATATTTA
TGTTTTTCTAAAAAGTGAACATTTTGTATCAGTTTTGCATTTTTGGTTCA
GCCCAGGCTTTGCTACTTTTGGTGTTTTCAGGGCAAATTTAATATGTAAA
TTTTTCGCGGAACGCTGACTCGTGAAAATTAATCCGGTTAAAAGTACCAT
AAGAAAAATTTGTTGTTTTGAAGGAATTTTAATCAAAAATATATTTTTCT
TAGTTTCCAAAATGATATGTTTATTTATGTTTGTTTCGTCTTTTTTCGTT
AAAAAAGTAATATTATAATATTTTTTGTTTGAGCCTATATAGATATTTAA
TACATATTTAAAAAAAATTGTAAATACAGAATGAAATATGATTTATAAGA
AATATGATGAAAAAAAAATCACAAAAAAAATTTAAAAAGTTCAAGGAACT
CCAGCCCCTTGCTTTGTGAAGCAATGGGCTGTTCCATTAAAAAACCATAC
AGGGGGTGGGTGGTTGATGAGCCTTTTCAAGTCAAAAAAATTATTGAAAA
TGTGTGGATACCCCCTGATAAATGGGAAAATTTGCAAAAAAANGCTCTGG
TTAAATAGACACTTTAAAATAAATCATAATAGTTAATACACCGTTTAACA
GTCTCGCCTTTAGATATTTGAACATGATATTAATGACAATTTTATGTATC
TCTCCTGAAAATTTCACAAAAATTCATCTAGAGGAAAAGAAGTTATGATT
AAAAGGAGTTCTTTACATACCATTTCTCTGCTGGGTTTTCTTATGAGAAC
TGGATGTTTACCTACCATTTTTTACGGGGGAGAGTGAAGTTTCCCGTTTT
TGCCAAAATCAAAA

Coding sequence (CDS) from alignment at scaffold_145:304789..313902-

>TCONS_00048684 ID=TCONS_00048684|Name=TCONS_00048684|organism=Clytia hemisphaerica|type=CDS|length=5400bp|location=Sequence derived from alignment at scaffold_145:304789..313902- (Clytia hemisphaerica)
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
TTTGAAAAAGCCTTGAAAGTCGAGGTTAGCGACGTTTCATTCACTGAGGG
TAGTATCGATGGCAACCCAAAACAAACTGGAAAAACAAAGATGTCATTCA
CAGTGTCGGGAAGTGATCAAAAAGTGTTGAAGAAACTCACCAAACTTGTG
AATACAGATCAAAGTATCAACGGATTGAGTGTGTACTCTGGATCTTTGGA
ATACGATGATGAACGCAAATAAGTGAAATTAGTGTTTTGTTGAGACAAGG
ATTCAAATCCGACTTTTCCAACAAAGATTCTGCACCATACCGTATGTTGT
CCGGTAATGTCGTTCACGATCAAACAGAAACAGAAGAGGATGAGGAATCA
GGACAAAGTGAAGAATCGAAAGAAGAAGATGAAGAGCCAGAGAAAGATGC
AGCCAAACCTGTACAATCCGCCAAACCTGTACAATCCGCCAAACAAGAAA
AACAAGCCAACAAATTCAACAAAGAGAACAACCATGTCAGAGATGAGATT
GAGGAGCCTGAGGACACCTCAATGAAATTGTTGGAGCCTTCGGAAGAAGA
AGATGGAGGTGAACCAGCCACGGAAGATGCAGGTGAAGAAGAAGCTAAAG
AAGAATCTGGCTCCGGATCGGGAACGTCTGATGAAGAATCGGGATCCGGA
AATGATGAAACAACGGCAAAGAAAGATCATTTCCACGGCATCACCGGTTA
CGTCGACAAGCGGAACAAGTCGGAACAACTCGATCATGTAAAAACACATA
CGACCAGTGTCCACAGTGGAAAGGCGAAGGAATGTGCTCGAGCGATCAGT
ACAAAGAGTACATGCAAACTGTCTGCCCAGTCACTTGCGAATTCTGCAAA
GATGTGGAGGATTTTGGTATTTGTCACACTCGCTGTTCTGTCTTGTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030931XLOC_030931Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048684-proteinTCONS_00048684-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048684-exon-scaffold_145-1575043694:313759..313902TCONS_00048684-exon-scaffold_145-1575043694:313759..313902Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:312138..312188TCONS_00048684-exon-scaffold_145-1575043694:312138..312188Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:311402..311575TCONS_00048684-exon-scaffold_145-1575043694:311402..311575Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:308584..308786TCONS_00048684-exon-scaffold_145-1575043694:308584..308786Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:307781..307934TCONS_00048684-exon-scaffold_145-1575043694:307781..307934Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:307184..307281TCONS_00048684-exon-scaffold_145-1575043694:307184..307281Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:306338..306563TCONS_00048684-exon-scaffold_145-1575043694:306338..306563Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1575043694:304789..305668TCONS_00048684-exon-scaffold_145-1575043694:304789..305668Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:313759..313902TCONS_00048684-exon-scaffold_145-1510915933:313759..313902Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:312138..312188TCONS_00048684-exon-scaffold_145-1510915933:312138..312188Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:311402..311575TCONS_00048684-exon-scaffold_145-1510915933:311402..311575Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:308584..308786TCONS_00048684-exon-scaffold_145-1510915933:308584..308786Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:307781..307934TCONS_00048684-exon-scaffold_145-1510915933:307781..307934Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:307184..307281TCONS_00048684-exon-scaffold_145-1510915933:307184..307281Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:306338..306563TCONS_00048684-exon-scaffold_145-1510915933:306338..306563Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1510915933:304789..305668TCONS_00048684-exon-scaffold_145-1510915933:304789..305668Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:313759..313902TCONS_00048684-exon-scaffold_145-1491911889:313759..313902Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:312138..312188TCONS_00048684-exon-scaffold_145-1491911889:312138..312188Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:311402..311575TCONS_00048684-exon-scaffold_145-1491911889:311402..311575Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:308584..308786TCONS_00048684-exon-scaffold_145-1491911889:308584..308786Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:307781..307934TCONS_00048684-exon-scaffold_145-1491911889:307781..307934Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:307184..307281TCONS_00048684-exon-scaffold_145-1491911889:307184..307281Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:306338..306563TCONS_00048684-exon-scaffold_145-1491911889:306338..306563Clytia hemisphaericaexon
TCONS_00048684-exon-scaffold_145-1491911889:304789..305668TCONS_00048684-exon-scaffold_145-1491911889:304789..305668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_145supercontigscaffold_145:304789..313902 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.287818	0.224598	0.295771	0.488617	4.21729	3.59289	31.6822	34.262	16.6373	11.9488	25.9665	20.3282	57.3791	46.9202	38.3028	88.4952	52.5107	55.1141	0.594452	1.87395	39.1103	42.739	33.7736	35.4341	60.3028	80.0055	8.04815	3.47823	1.26481	0.740264
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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