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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048675 ID=TCONS_00048675|Name=TCONS_00048675|organism=Clytia hemisphaerica|type=transcript|length=2033bp
TAAGTGTTGTATATCTCTCCCAATTGTCTCATCTCTGGATTGGTTCAAAG
CTATCTGATGTGAAGATCTGGTTTCTGTTAATTCGTTTTGTAGCTATCAT
TGTGAGTTTTAGAAAACCAAGATCTTCATTATTCGAACTTGCAGGACTGG
TATTGGGAGACTGTGTATTTTTTTACCATGAGGTAAGTTGCAACCTGCtc
atcaaaacatcaaaacaatggCCATCTAAAGTCCATGATATTTATTACAT
GAATGATGAAACAACGTTGTAGGCCAGCTGGGAAGTTCTTTTTATACTAT
AGGGTTTTTAGATATGGTAACTGCAATCACCGAATACCTCCACTGTCTCA
TTGTCGCGTTTGATTCATTATTCGCAATAAGGAGTAAAATGAAAGACTAT
TAAATCAATGTTAATGGAAAATCTTTTGCCCATGTTCAACCTCGTTTACT
GCGTATTAtcggctttttgatgcttactgatagcgctacatattctctgg
cgtcgatccgtaacgtaaataaagcctggggtacacggggacgaggttgg
ctCATGTTATGATGAATTGACTGCATCGTTCCCGGAGATAATTACCTCGT
ACCACTTGGCCCTTTAAAGGATAATTTCGAATTAAGTTAAGTTacttaaa
agatttcaaaagtgAAAACCCCATTTACACTCACCATAACCGTTTAGAAT
CNAAATTTAGTTAATTacttaaaagatttcaaaagtgAAAACCCATTTAC
ACCACACTCACCATAACAGTTTAGAATCATTACCATCTACAAAACAAGAT
TGCATGACTTCTTTCTTATAATAATCTACGTTTGATTGTTTGCTGATAGA
GATTTATGTCAACAGTGTTTGAAGACCTATTTAGAAACTTCTGGGTCCAC
ATAAATAAACAAGCTCTTTCCATATATACATTCTGGTCAGAACTATGAAA
AGGGAAGTACTCCTGTTGGGCTAAACTGGGTTCAACGCTGAATTTATTTT
AAACGgatttctttttctaaatatgATACGATTGTAATTCATCACAGTTT
AGTATCGTTCTGTAAAGCTAAAAGCAGGCTCCCAGTTTTGATTTAGATCT
CAATTACCAAAGTCAATCTTTATGATACAGCATTTGGtaaattagattca
ttaacTGGgagattttttatgttttgacgATTAGGAAACTATGACATTTT
ACAATACGTAAGCGATACGGCCAGAAGTATTTGTTGGGCTCAGTTGGACA
GGGTTCTTGTTTTATGAAAATCTGTATAAACTGTTTAAGCGTGTTTAATA
ATTGGGTGAAGCTGGTTGCTTGACTATGCACAAcggaaattagaaatttt
tatccgtGGACGAATTTCTCTTCAAGTTTGCAGAAATGTTTGATCGTTTG
AAACgaggttttacaaaattcaaaGGGTATATGTTTTTCGAATACTTTTA
TGTGTTAATTGCTTTTTTGGAAACATAATTGCTCAAATTTTAACggattt
atgtttttttatgcatttttgcgGCTAAACAGCTAAACAAGGTTCAAACT
ATAACGCAGAAGCTTGGGTAGCTAGTTTCAGCTTCATAATGATGATTTAT
TCGAGATCTCTCATTTAACACGgtcataaaacttaaaaaaggaGTTGAAG
TGTCGATCTTTTACCtgaatttgatcaaatttggctacattttcttttta
gtgtaaGGTCCAATTTTTAGACCCAGCTTTTTGCGAGCGCATGCGCTAGT
TTTCTAAATCGTGATACATAAATGTTAAGGTAGAGGGTGTCTTTAGCTTG
GCACATATTTTGTTGGTTTGAAATATCAGTCCTTTCAAACTTCAactttt
tccgattttttttcttagaaTGGATGCAGAGGATGGACCAAGCGAAGGAA
AGTTTGTGGTCAAATATGTAGAACcatatgatgacgtcatctattTTGTT
AAAACTGTCACCGTCAAAGAGGTGAGGAATTTATTTTGCTAAATCAAGTT
TTATAACCCCCCTCTCTAAAAATCAAAGCTAAC Run BLAST on NCBI transcript from alignment at scaffold_145:197189..199221- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048675 ID=TCONS_00048675|Name=TCONS_00048675|organism=Clytia hemisphaerica|type=transcript|length=2033bp|location=Sequence derived from alignment at scaffold_145:197189..199221- (Clytia hemisphaerica)
TAAGTGTTGTATATCTCTCCCAATTGTCTCATCTCTGGATTGGTTCAAAG
CTATCTGATGTGAAGATCTGGTTTCTGTTAATTCGTTTTGTAGCTATCAT
TGTGAGTTTTAGAAAACCAAGATCTTCATTATTCGAACTTGCAGGACTGG
TATTGGGAGACTGTGTATTTTTTTACCATGAGGTAAGTTGCAACCTGCTC
ATCAAAACATCAAAACAATGGCCATCTAAAGTCCATGATATTTATTACAT
GAATGATGAAACAACGTTGTAGGCCAGCTGGGAAGTTCTTTTTATACTAT
AGGGTTTTTAGATATGGTAACTGCAATCACCGAATACCTCCACTGTCTCA
TTGTCGCGTTTGATTCATTATTCGCAATAAGGAGTAAAATGAAAGACTAT
TAAATCAATGTTAATGGAAAATCTTTTGCCCATGTTCAACCTCGTTTACT
GCGTATTATCGGCTTTTTGATGCTTACTGATAGCGCTACATATTCTCTGG
CGTCGATCCGTAACGTAAATAAAGCCTGGGGTACACGGGGACGAGGTTGG
CTCATGTTATGATGAATTGACTGCATCGTTCCCGGAGATAATTACCTCGT
ACCACTTGGCCCTTTAAAGGATAATTTCGAATTAAGTTAAGTTACTTAAA
AGATTTCAAAAGTGAAAACCCCATTTACACTCACCATAACCGTTTAGAAT
CNAAATTTAGTTAATTACTTAAAAGATTTCAAAAGTGAAAACCCATTTAC
ACCACACTCACCATAACAGTTTAGAATCATTACCATCTACAAAACAAGAT
TGCATGACTTCTTTCTTATAATAATCTACGTTTGATTGTTTGCTGATAGA
GATTTATGTCAACAGTGTTTGAAGACCTATTTAGAAACTTCTGGGTCCAC
ATAAATAAACAAGCTCTTTCCATATATACATTCTGGTCAGAACTATGAAA
AGGGAAGTACTCCTGTTGGGCTAAACTGGGTTCAACGCTGAATTTATTTT
AAACGGATTTCTTTTTCTAAATATGATACGATTGTAATTCATCACAGTTT
AGTATCGTTCTGTAAAGCTAAAAGCAGGCTCCCAGTTTTGATTTAGATCT
CAATTACCAAAGTCAATCTTTATGATACAGCATTTGGTAAATTAGATTCA
TTAACTGGGAGATTTTTTATGTTTTGACGATTAGGAAACTATGACATTTT
ACAATACGTAAGCGATACGGCCAGAAGTATTTGTTGGGCTCAGTTGGACA
GGGTTCTTGTTTTATGAAAATCTGTATAAACTGTTTAAGCGTGTTTAATA
ATTGGGTGAAGCTGGTTGCTTGACTATGCACAACGGAAATTAGAAATTTT
TATCCGTGGACGAATTTCTCTTCAAGTTTGCAGAAATGTTTGATCGTTTG
AAACGAGGTTTTACAAAATTCAAAGGGTATATGTTTTTCGAATACTTTTA
TGTGTTAATTGCTTTTTTGGAAACATAATTGCTCAAATTTTAACGGATTT
ATGTTTTTTTATGCATTTTTGCGGCTAAACAGCTAAACAAGGTTCAAACT
ATAACGCAGAAGCTTGGGTAGCTAGTTTCAGCTTCATAATGATGATTTAT
TCGAGATCTCTCATTTAACACGGTCATAAAACTTAAAAAAGGAGTTGAAG
TGTCGATCTTTTACCTGAATTTGATCAAATTTGGCTACATTTTCTTTTTA
GTGTAAGGTCCAATTTTTAGACCCAGCTTTTTGCGAGCGCATGCGCTAGT
TTTCTAAATCGTGATACATAAATGTTAAGGTAGAGGGTGTCTTTAGCTTG
GCACATATTTTGTTGGTTTGAAATATCAGTCCTTTCAAACTTCAACTTTT
TCCGATTTTTTTTCTTAGAATGGATGCAGAGGATGGACCAAGCGAAGGAA
AGTTTGTGGTCAAATATGTAGAACCATATGATGACGTCATCTATTTTGTT
AAAACTGTCACCGTCAAAGAGGTGAGGAATTTATTTTGCTAAATCAAGTT
TTATAACCCCCCTCTCTAAAAATCAAAGCTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048675-exon-scaffold_145-1575043694:197189..199221 | TCONS_00048675-exon-scaffold_145-1575043694:197189..199221 | Clytia hemisphaerica | exon |
| TCONS_00048675-exon-scaffold_145-1510915933:197189..199221 | TCONS_00048675-exon-scaffold_145-1510915933:197189..199221 | Clytia hemisphaerica | exon |
| TCONS_00048675-exon-scaffold_145-1491911889:197189..199221 | TCONS_00048675-exon-scaffold_145-1491911889:197189..199221 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:197189..199221 - |
Blast
The following BLAST results are available for this feature:
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