|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048665 ID=TCONS_00048665|Name=TCONS_00048665|organism=Clytia hemisphaerica|type=transcript|length=437bp
AGAATTCAAAGggaacaaaagaaaaactataAAACAATTATGCAGCTACT
GGAATTGATCGCGATTTTATGCATCTTAACATGTATATGGGGCCAACCTT
GCGACGTCGTTCGCTGGACCGGCTGCAAAGGGCCAAAGCCGAAACCAAAC
ACGAACACAGCTAATGTACTTCACAGCAAACtgaaaggactggggatgat
gCCTTCACAAGTTCGAGATCACGCACAAGACTACgatgaagaagaagata
atCAAGACGCTGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGATTTTC
AATGATATTATCCCTTCGAGGTTATCAAAGGAATTGAAAGAAAGGTCTGA
TGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGACGAAA
AAAAGAACGAGGCTCATCATGATGGTGATGACAATTT Run BLAST on NCBI transcript from alignment at scaffold_145:86797..95384- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048665 ID=TCONS_00048665|Name=TCONS_00048665|organism=Clytia hemisphaerica|type=transcript|length=8588bp|location=Sequence derived from alignment at scaffold_145:86797..95384- (Clytia hemisphaerica)
AGAATTCAAAGGGAACAAAAGAAAAACTATAAAACAATTATGCAGCTACT
GGAATTGATCGCGATTTTATGCATCTTAACATGTATATGGGGCCAACCTT
GCGACGTCGTTCGCTGGACCGGCTGCAAAGGGCCAAAGCCGAAACCAAGT
AAGACTCTTACATTCAAATACGTTAACGTAAATTCTTATCAACAAAATTT
TATCTTCATAATCTTCAGTCGAAACAAAATGAAAACATTCTATTGGCCCT
TTTTTGTGACCTATGTAATCTTGTACACAGGGGAACTTGTACTAACTACT
ATTTGATTTTACTGATGGACGTGATACAATCTTTCCTGAGCGTTATCGGC
AAAAGACAAAATAAGGGACGGTATGGAGTTTTTAAAAGCTCTTATTTGAT
TTGGTTGGTCGTAAACAATTTTGTTACTTTTTCTAAAGAACACGTCATTT
TTATTACTTCAAATGACCAATTATTAAAGTATCTCCATCTCATCTGCAAA
ATGAGGGGCTAGCAACCTTTATCATTTTTTTCTGCTCTTCATTTACAGAC
ACGAACACAGCTAATGTACTTCACAGCAAACTGAAAGGACTGGGGATGAT
GCCTTCACAAGTTCGAGATCACGCACAAGACTACGACGATGAAGAAGAAG
AGGACGAAGACGCGGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGATT
TTCAATGATATTATCTCTTCGAGGTTATCAAAGGAATTGAAAGAAAGGTC
TGATGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGACG
AAAAGAAGAACGAGGCTCATGAAGGTGACAATTTATTCAACAATGTGGAT
TATGACAATGCAGTTCTCGAAGAAAACACAGGGACTAAAGAAACGAATTC
AATACAAAATGATGACTCAGCAATCTCTATTGATTTCAATGAAGTTGAAC
AGATCTTGAAGTCACTTGAAATTACGTTATTACGGAAGAGGAATGTATTA
GAGGAAGAACGTAAATCTTTATTGGAAAAGNAAATTACGTTATTACAGAA
GAGGAAAGTATTAGAGGAAGAACGTAGATCTTTATTGGAAAAAGAAAATG
AAGAAAAACAATCTTATGATGACGTAATGAACATTATCAATACACCAATG
GGTAACTTGAAACGCTTAAGGGATGATTTGATACAACTTCAAGAACTTTT
AACAAGAAAACCCAAAAGAAATACGAAATGAAGAATTAATTTCAACCCCG
TCCCCGTGTGTTCCAGGCTTTATTTACGTCACTGAAGGACGATACAAGTA
AGCATCATACTACGCAGGGAGCGAGGTTGTGAAAAACTTCAACTTCCCAA
AAAAGAATTCTACAAAGGGTATTAGTGATCAAACTTCAATAGCTGGACTA
TTACGGTAATCTTTGTGATATTATGAAGCACGTACTTTATGTATATGTAT
GTATTTCCAATATGCGCAGAAATACTGCTGGACGGAGTAAGTAAATTTGA
AAGTGATAAAAATGTAAATTTTTAAGGGAGGGTTAAGTCGGTGTTTTTTA
CACTTTTGGCGAAAACGTGAAGTTTTTTAAAACACGTTTTAAAAATAAAT
ACAAAGTGCACCTTTTCTTAATATGATATCAGGGGATCGGCAAAGGATTG
AAGATTCCATTCCTTTTTTCCCGAGCCTTCTAGAGAAACTAAGCTAGTAC
TTATAACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATGGAATCCTTCA
TTGAAAGAAGCATACTTTGCCTTATCCAAAATGAGCGTATTAGTCTGGAA
TGAAATATCCTACAAGGCTCTAAACTGATTTTTTACGTTATATGTGATAT
GTCGTTACGTCTATGCCTTAAAATAAGCTCAGATAGAGCCTCAAAGGATT
AATAATTCCATTTTCCGAAAAGTTGGGGCTGGGGTTGGGTGCACCACTTC
AATCGCTTTAAATTGGAGTTTTTAATCCTAAAACGCTCGTGAAACCGCAC
TTTTTGGTATCTGAGAGTGTTTTAGCGTAAAGTGCAATTGACTTTTGATT
GATTTTAGATTGTAATCAGCCCATTTTAAAGATGAAATGTATCTTTTATA
ATTGTCCAAGTTCAGAGATGTTTTCCGGATGGAATTTCGGATCCAAAAGT
GCTCTTCATCATTGTTTCATAAAATATGGAGATCGTGTGACATGTTGAGA
CCATCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACGTAACT
CTCATAATTCCAAAGTTCATAAAATCTAATATTTTGGAATATTGAATCCT
TCTTCGCTCCTGGGACCAAAACCAAAGCTCTAAGCTCGTATGCTCCACCT
TTTTGGAAGATTTCACCCCAAAATCCTTGTTGAAACTTATATTATTCAAG
AAAAACCGTTTTTTAGAAAATTTAATGTCACGTTTTCGCCAAAAGTGTAA
AAAACACCGACTTAAGAATTTTACGAAAATGACGTTATTCTCTTTAGGAC
AAAATTTATATAATTTGAAAATTTTGTATTTTTAATAACTATTTATGATG
TAACAACACGGAAATAAAATTTCATTTTTTTTCATTTTTTCGTTTATATG
AATAATACATAGTTTGTCGAAGGACTTTGTCGACGGTAGGGAGAACCCTG
TCCCCTCAACTCTCTCTAATCCGAATCTCTATTATTCGAATCTTTCTGTA
ATTCGAACTAAAATATCGATCCCCGCAGCTGGAAAGTGGTATGAATTACT
ATCTGTAATTCAAATCTTTCTCTAATTCGAACAAAATTTTGGTCGCCCTT
GAAGATCGAATTAGAGAGAGTCAACTGTATCTGACGATTGCAATTTCTTT
TATTAATGCGGTCTACGCTAGAGATCCTTAATCTTCTGAAAATTGGAAGA
CCGGAAACGAGTCCGTTCCTGTTGCTTTTAATTGTTTTCGATCTGTTGAA
TAACTTTGTTCATTTCATCTATGTCTAAACCAATTTTTGCGTATTTCAGC
CATTTCATCAGAAACTTATTTTGTGATCTTGCAATCATGAGAGAATTTGT
GTCTTTGACTAATTAAAGTTTCTACTGAATCTTAGGGGTGAAAATTACAT
TTTAAGAAGATTGAAGTTCATGCTTGACCATGGAAATTAGAAAACAACTA
CAATGAAATCCCATCACTAAAAAATCATTTTTACTGTCTTCACCAATCAT
GACAAAGGAAGGAGAAGAAGGGAGTTCATGTCATTCATGACGTAATGTTT
TCTACGGAAAGACCCCAGTTTTTGTCAGTAGTGGCAAATTTTATACAAGT
TTTGTCTACTTTAAATTTGCCACTACTGGCAAAAACCGGGGTCTTTCCGT
AGAAAACATTACGTCATGAATAACATGAATACCTTTCGAGAGTTTGTATC
TTAATATATAATGAATTTTAACGTCTTTCATTCGAGTAGTACCTCTGAAT
ACAAATGGCATCATATAACGCAATTAAATCATAACAGATCATCCATTCTG
CCATACCACGCTTATGCTCTAAAGGTATGTACAATCAGTGTCATAATATA
TTGGCTCTTTTGGCTAATTTACAATTTTTTGAAAATTGAAGTTCGAGCGA
GAATGTCAATTTTTAGGCCTTCAACTTGATTTCATTGAGTATTTCGATCT
GAGAGGGATTTATTGGTTTCTAGACTATATTTCAAGCCCTACTGGACCAT
TTTTGAACTTTTGGATCCTCAAATCCTAAGGTCCTACAGTTAAAACTCTA
CCCTTCGAACCTACTTTAGAGCACTTACAAATCGATTGTGGTTTCAAAAC
ACCCCGGTGAATTTCCCTTTTGTGCTAAGTATTTTGTCCCTGATTGTAGC
AAATGTGAAAATCTGACCTGGTCTTTCAGCCAAAATAACGAAAACTGCGT
TGCGTTTTGCTTTAAAACGAGAGCAAAAGCAATTTAACATTCAAAATCTG
GATGAAAAAGATCAAATCAGATTCTGGGCAGATTCTCTTACAGAGTCATG
GCTTCTACAGTGCGCAGAGTAATCAGAATCTGCTCGGAGATTATGTGAAA
AGTAAAATTGATTTCTTAGTTCAAATTAGCTACTTTATACATATGACAAA
GGTTTCGCCGATTTATTGCTGCTGTAAAGGGTGCGATTTTAAAAGCTAAT
TTTGGTAAACCCACTACCCCCCGGGTCAAAGTTTCTGAACAGACCCTGAT
ATAAGATTCTAGCTCACTTATATGCTTGTAACAGTACCTTGAAGTGTAAA
TAGGGATCAAGGAGAGAGCCACTCTATTTGAACAACAAAAAAACACAACT
GACCTTGTAATGACAATTTCAATCAATGGATGTGACATCCAAAAACCACA
GAGTGATACCAGAACTTCATTTGTTTTTATCCCTTTTTTTTCGTGTGTTA
TACTGGAAAATAAAAATGGATAAAGTACAGTGTGTCTCGAAAAAAGCGGA
CACATTTTGGTATAAAGTAAAATCCTCATAATTTATGCGAAATTTCATGA
CATGTATCAGTTTTTATACTTAATATTTTAATCTCAAAAACCTGTTCAAT
CATGTTGGCTTGGGAATAGAATATTTATTGATTGAACAGAGAATTTTAAC
CCTTTAAGTGCCGATGTCGTATATATACGACATGGGCTATATAGGAGGGC
GAAGCCCTCCTGTAATGCCCAGTTTGAGTTAGAAATCGTTATTTTTGGTC
GACCTCGTAGGAATTAGATTGTCCTTTATGGTCAAGCAAAAAAAAATTCA
AAAGTGAGTCTTTCCAGCGAAATTTTAAGCAAAAAAGTCAAAAAAATGCA
AAAAATTGACAAAAATTCACTTTTTTGAGATTCTGACCGTTTTTTGACTA
TTTTTGGTCAACGAGTGATCCAAGAACCTCCAAATTTGGCCCTGTTTTAC
TTTATTCTGTCTTCTAGTGAATTGATTTGAAATTTTACCACTGGGCACCT
TTTCATCAGTTCAGTCAGGTCCGCGCAGCGGGCCTGACTGCTTTAATTCC
CTAGAAGACAGAATAAAGTAAAACAGGGCCAAATTTGGAGGTTCTTGGAT
CACTCGTTGACCAAAAATAGTCAAAAAACGGTCAGAATCTCAAAAAAGTG
AATTTTTGTCAATTTTTTGCATTTTTTTGACTTTTTTGCTTAAAATTTCG
CTGGAAAGACTCACTTTTGAATTTTTTTTTGCTTGACCATAAAGGACAAT
CTAATTCCTACGAGTTCGCCCAAAAATAACGATTTCTAACTCAAACTGGG
CATTACAGGAGAGCTTCGCCCTCCTATATAGCCCATGTCGTATATATACG
ACATGGGCTATGTAGGAGGGCGAAGCCCTCCTGTAATGCCCAGTTTGAGT
TAGAAATCGTTATTTTTGGTCGACCTCGTAGGAATTAGATTGTCCTTTAT
GGTCAAGCAAAAAAAAATTCAAAAGTGAGTCTTTCCAGCGAAATTTTAAG
CAAAAAAGTCAAAAAAATGCAAAAAATTGACAAAAATTCACTTTTTTGAG
ATTCTGACCGTTTTTTGACTATTTTTGGTCAACGAGTGATCCAAGAACCT
CCAAATTTGGCCCTGTTTTACTTTATTCTGTCTTCTAGTGAATTGATTTG
AAATTTTACCACTGGGCACCTTTTCATCAGTTCAGTCAGGTCCGCGCAGC
GGGCCTGACTGCTTTAATTCCCTAACCTACCCCCCCCCCTTGGCCGCCGC
CCACCACGCCCTTCCTAAATCGGGCGGCGCCGAAGGCGCCCAAAAGAAAG
TTGATATACGAAGTGGTTTAACGAGCTATATACGAGCTTCTAATTCCTTC
TAGATCAGGAGATATAAGCCCTTAAAGTTTGAACTAGCGATTTTTTAAAA
AAAACTTAGAAAAAAGGACCCTGGCACTCAAAGGGTTAATCTTATTTCAA
TTATTCTTAGCTCAGTTAAGATGATGAGTTTTGAGGATTTTTTACTTTAC
ATAAAAATTTGTCCGCTTTTTTTGGGACACACTGTATAATATTAAAGAAG
AAGAACACAACATAGAAGGGGAAGGACAAAGTTCAGTTTCAACCCCTACA
CGCTACTTAAATCGCTCCTATTCACAATACTTAAATTTTTTCACATTATT
TTTGATTAGCCCCTATTTCGACTTGGCTTTTTCCCAGTGATAAAAAATGG
TGTCCCTTTATGTTGGTCAAAGCCTTCCTTATATTATTTCACAAGAGTAC
CAGGATTGAAATTTTATTCATTTCGAAGTTTTATGCCTAAAAAACGTTTA
TTATAGGTATGATAATTTGTAATTATAAATAGTAAAAATATGTACATCGG
AAAATATCTTAATATAAATTTCGTTTTTGGCTAAAATTGTATCTCAAAGA
GAGGATAAGGATTTTCCCTTCTAAGATATGAGGCTTTTTTTAAAAGCTTA
AAAAATAACTCAAAATGTTTATCGTAAGAAACGCAAATAAAAATCTGATA
CTATATATAGGTAGTTGTATGAAATTCGGTCGTCGAATTTTTAATTCTTC
GAAGCAGCCATTCGTCTTGCTTCCTCAAGCGTCAACTGCAAACTAAAAAA
GTGAAACTTGTTTAAATTGATGAAAATATATTCATCATTATTGTACTAGC
TAAATTTTTTAGTATGCCACTTGCCCATGACTTTGTTCACCAAATTCAGA
TAAACAGCTCCGTCTGATGTCAGTATTTGTTGTGTCCGAGAATGGAAAGA
TTTTACTGTTTTTTAAAAGGATAATCAGAAGGGTTGAGATATTTGGCATG
TGGGTTCCTTCTATATTGCATTTAAAGTTTTTATAAGCAACTAAAGTTCA
TTCGCTTCAGGGCTGGAGTTGCTAAGGATTTTCAGCCAAAAGGTTGCTTA
TGGATTTTGAGCCAATAATTTCTAGCAATTTCAAAAAATTAATGTCCAAA
ATACGTCAAATTAGGTATTTCGAATTTTCGGCCGAAAATGCTTCTTCTTT
AGTAATTTTTGGTTGCGTTCCCCGCTCATGGCCAGTTTCAGGGCTAGGTT
GCTAAGTCAAAGTTAATTTTATGGCCATTTTCAGGGCTGGACCCTTAGCA
ACTCGGTTGCTTATATAAAAAGAATTGTGTAGTCCTGAACAAAATATTTT
GTCTAACTATTTTCCGAGGTCGAGATATTTAAGTTACAAGTTTTCTTTTC
TTTCTTACTTTTTTTAACGAAAGAACCGTGTGGACTTTGGAAAATAGTTA
GACTTTAGAGAATATTCGGAGGTTTTACTCAGCATCGAATAAAGGTTACT
GCAGGCCAAATACATCAAACCATCTGATTTGATTATCACTTTAAATTTAA
AGTTGACACAAACTTACGTTCGAATTTCTGCTTGATATTTTGCTTCCTGT
TGTTCGATGGTTCGTGCTCTGATTTCTTGAACGGTGTACTGAAATGAGTA
AAAAAGAAAAGCATATCAAAATGAATTAAAGGTTAATTTTTCCCGACAAA
ATAACAATGAGAATAAGAACATAGTTGAATCTCTCTCTAATTCGATCTTC
AAGGGGCTGTGACTTTTCTTAGAGAGAGAAAATTCGAATTATAGGGAGCA
TCTTAGAGTACTTTCTAGCTAAGTGTTTCCGTTCGAATAATAGAGAAGAC
TGTATAAAAATTCTCCCTGGCAAAATTTTTAAACAAGATCGAGTTATAAG
CAATCTCCTTTATTTCAAATCTCTATCTCATCTGCAAAATAAGGGGCTGG
CGTTCTAGAAAGTGAACCTTTATCATTTTTTTCTGCTCTTTATTTACAGA
CACGAACACAGCTAATGTACTTCACAGCAAACTGAAAGGACTGGGGATGA
TGCCTTCACAAGTTCGAGATCACGCACAAGACTACGATGAAGAAGAAGAT
AATCAAGACGCTGAGAGAAAAACTAACCAAAAGAAGATTCTAAGGATTTT
CAATGATATTATCCCTTCGAGGTTATCAAAGGAATTGAAAGAAAGGTCTG
ATGATCTAGAAGATTTAGATGTAGCAGCAAAAAGACAGGAAGAGGACGAA
AAAAAGAACGAGGCTCATCATGATGGTGATGACAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048665-exon-scaffold_145-1575043694:95237..95384 | TCONS_00048665-exon-scaffold_145-1575043694:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048665-exon-scaffold_145-1575043694:86797..87085 | TCONS_00048665-exon-scaffold_145-1575043694:86797..87085 | Clytia hemisphaerica | exon |
| TCONS_00048665-exon-scaffold_145-1510915933:95237..95384 | TCONS_00048665-exon-scaffold_145-1510915933:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048665-exon-scaffold_145-1510915933:86797..87085 | TCONS_00048665-exon-scaffold_145-1510915933:86797..87085 | Clytia hemisphaerica | exon |
| TCONS_00048665-exon-scaffold_145-1491911889:95237..95384 | TCONS_00048665-exon-scaffold_145-1491911889:95237..95384 | Clytia hemisphaerica | exon |
| TCONS_00048665-exon-scaffold_145-1491911889:86797..87085 | TCONS_00048665-exon-scaffold_145-1491911889:86797..87085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:86797..95384 - |
Blast
The following BLAST results are available for this feature:
|
