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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048661 ID=TCONS_00048661|Name=TCONS_00048661|organism=Clytia hemisphaerica|type=transcript|length=2308bp
ttTTAACTTCTCCCGTCTCCCGAAATAtctctttaaattttcaaaacaaa
ggcaaGGTTAATAATATCCAGCGGTAGGCGACtagaaattattttgttat
tgtattGTATGtataaaaatgtcattttaaatCTTCTatctatttatttt
gaatatttttgtgcttttgttttattttgaaaaatttcgcaatAAATTTC
CCAGTAGTCTTTATCCACGCGTGGATTAGGATATCAAGAATAGTTTATCA
AAaaaagagaggaaatttttaaaTCCCAGCGGAGCTTGactatttattat
tttattgatgttttttcataatttcccTGAGAAAAAATCAGCggttttga
gagaaaaattatAATTAGTGTACTCCATCGGCGTGATTTCTCATTGGTTT
ATCCTTCTAAAATGATTAGAAGGGGGAGAAAAAACAATAAGGTGGAGAGT
AGAAAACCATAGTGATAGACCTCGCATGGATACCGCTGTCTAAGAacgag
aaaataatttttgtattattactatcttttgttatcaaaatatttcgatc
attctttattttattgccgtcattaaaattttccttttccctcatttctt
ttgttttgtagaAGCATGCGTCTTGAGTTTATTGATTTCAAAAGTACAAT
AAAAATCAGAGGATAATATTCGTGAATAAATAGAAGAATAAAGAAAcatt
aaaagaaaattacaaacaaaagagAAGAAGATAGGGGGTTCGTGGCAAAG
AGAAACGTACAGCGGTTTTGAGGAGTATAAAAAGGAACCGCGATCCCGGT
CAGCAGTTACTCACTGGTCAGCAGTCGAACAAGAAACActacaaataata
aaatttcaaatattttttaccgACAAACGAAAACGAGAATGAAGATGATC
AAACATGAAGATTTGTATTACGAAGATTATTCGTCGCATTCGTCTTCCGA
AAACGAAAACGACTCTTTGGACGGCGAGAATTGTCGGCTTCCAAAACGAA
CAAAAGTCGATTGCACGAAACGACTCAAAGCGAGCGCTCGCGAACGACGC
AGAAGGCATGTACTAAACGACGCTTTGGAACGGTTACGTCGCAAGGTGCC
CAGTGTCGGGTCACGATCATCGAAACTCTCCAAAATCGAAGTCTTACGTA
TGGCGATCGACTACATTGGAATGTTATCTTATTACGTCAGTTCATCACCC
GATCAACAAAGTTTTCATTACTCTCAACAAGACGAACAACAAGTCCCACA
GTTAGAACATTATCAACAACAAGCCATGTACAACAATAATAATAACCTGA
TCTCATATCAAGCGGACGCTTATCTACAACAGCACGCTTGGCAACAACAA
GGATCACCTGTGATGAATGAAATGAACCAAATGCTAGAGATGCAGCATTT
ACAACAACTAACTCACATGGACGATTACAACAACCAACAACCTTACCCAC
CAATGTAAAAAGAAGGACGTTCGAGTGGAAATGTTAGTAATGGAGAAATT
CGCCGAAGAAAACGTTAAGGATTCACTGAATATAAACGTCGATGATCGTT
TACCATCGCCCTCTTGCGCACATAACAAATATACCAGTTGGGTTCCCTTG
GCACTGCTATCGATCACCGTAATCATCAAGTTACACAAATCTTGCTCAAG
TCAATAAAGCGGAACCCGGAAATCCGATAAAGCCGGAACAAAGAATCAAG
GCGAAGGCGAAAGTAATTGCTCGAGCTTGAGCCAAAGAATGAACTTTCAA
ATTGTGTCTCAAAATGTCAAGACTTATTTGTTCCGAAAATGGAGAACTGT
TTATAAATAAACAGTTGCAAAAATTAATATATTAAAGATTTTCTATAGAC
ATAttgtacatttaaaaaaattatagttcaaaattatttataccgctttt
gtatatatttcaaaatattatcataaaCTGGGAAGGGATACTTTCGTTAG
ATGAAAGCTCTCTCATCCAAACCGTTCaagtcaattttcaataagTAGGG
CAcattttaattttgtaaaaaaagagaaaattttatgAGATTTTATTGGT
AGGAATTTTGTGTAAATTTATAAACGAACTGTTTGTTTTAATTTATagtt
tttcatatatttttcaggaCTTTATTCATAATGGTAGATAGATAAAAATG
TGGACTTTTGATTCACAAAACTATATGGCTCGTTGTGTCACTTTTCTTAT
TCTTTctcattgcaaaatattttggaaataccctcttcaaatacatttta
aaTTGGGAATAAAAATCGATTGAAATTACTGAAAATAAAAGTCCAGATCG
AGTGCCTT Run BLAST on NCBI protein sequence of Hlh-6 >TCONS_00048661-protein ID=TCONS_00048661-protein|Name=Hlh-6|organism=Clytia hemisphaerica|type=polypeptide|length=189bp
MKMIKHEDLYYEDYSSHSSSENENDSLDGENCRLPKRTKVDCTKRLKASA
RERRRRHVLNDALERLRRKVPSVGSRSSKLSKIEVLRMAIDYIGMLSYYV
SSSPDQQSFHYSQQDEQQVPQLEHYQQQAMYNNNNNLISYQADAYLQQHA
WQQQGSPVMNEMNQMLEMQHLQQLTHMDDYNNQQPYPPM Run BLAST on NCBI transcript from alignment at scaffold_145:373730..376379+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048661 ID=TCONS_00048661|Name=TCONS_00048661|organism=Clytia hemisphaerica|type=transcript|length=2650bp|location=Sequence derived from alignment at scaffold_145:373730..376379+ (Clytia hemisphaerica)
ttTTAACTTCTCCCGTCTCCCGAAATAtctctttaaattttcaaaacaaa
ggcaaGGTTAATAATATCCAGCGGTAGGCGACtagaaattattttgttat
tgtattGTATGtataaaaatgtcattttaaatCTTCTatctatttatttt
gaatatttttgtgcttttgttttattttgaaaaatttcgcaatAAATTTC
CCAGTAGTCTTTATCCACGCGTGGATTAGGATATCAAGAATAGTTTATCA
AAaaaagagaggaaatttttaaaTCCCAGCGGAGCTTGactatttattat
tttattgatgttttttcataatttcccTGAGAAAAAATCAGCggttttga
gagaaaaattatAATTAGTGTACTCCATCGGCGTGATTTCTCATTGGTTT
ATCCTTCTAAAATGATTAGAAGGGGGAGAAAAAACAATAAGGTGGAGAGT
AGAAAACCATAGTGATAGACCTCGCATGGATACCGCTGTCTAAGAacgag
aaaataatttttgtattattactatcttttgttatcaaaatatttcgatc
attctttattttattgccgtcattaaaattttccttttccctcatttctt
ttgttttgtagaAGCATGCGTCTTGAGTTTATTGATTTCAAAAGTACAAT
AAAAATCAGAGGATAATATTCGTGAATAAATAGAAGAATAAAGAAAcatt
aaaagaaaattacaaacaaaagagAAGAAGATAGGGGGTTCGTGGCAAAG
AGAAACGTACAGCGGTTTTGAGGAGTATAAAAAGGAACCGCGATCCCGGT
CAGCAGTTACTCACTGGTCAGCAGTCGAACAAGAAACActacaaataata
aaatttcaaatattttttaccgACAAACGAAAACGAGAATGAAGATGATC
AAACATGAAGATTTGTATTACGAAGATTATTCGTCGCATTCGTCTTCCGA
AAACGAAAACGACTCTTTGGACGGCGAGAATTGTCGGCTTCCAAAACGAA
CAAAAGTCGATTGCACGAAACGACTCAAAGCGAGCGCTCGCGAACGACGC
AGAAGGCATGTACTAAACGACGCTTTGGAACGGTTACGTCGCAAGGTGCC
CAGTGTCGGGTCACGATCATCGAAACTCTCCAAAATCGAAGTCTTACGTA
TGGCGATCGACTACATTGGAATGTTATCTTATTACGTCAGTTCATCACCC
GATCAACAAAGTTTTCATTACTCTCAACAAGACGAACAACAAGTCCCACA
GTTAGAACATTATCAACAACAAGCCATGTACAACAATAATAATAACCTGA
TCTCATATCAAGCGGACGCTTATCTACAACAGCACGCTTGGCAACAACAA
GGATCACCTGTGATGAATGAAATGAACCAAATGCTAGAGATGCAGGTAAA
AACAAACATtacttccgaaaattatttgaCAACTTTCAACTAGCCATATT
ATACAATATCCATTCTACATTTGAAATAAAGAGACATTTTTAAAAGGCCT
TacctttaagggaactaatttttcaaccacgaaaattagttccgcaaaaA
ACGCCAATTTATACACGTCATAAGTTTCCTTATAAAACTAACACCATGAA
AGTCATTTCCGATCAAGCTACTTTTTGTTTAAGAGAGTGTTGAGTATATC
ACTAGCAATTTGTCCGCCGACTTTCTCATAAAATACATGATGACCTAACC
GTATCtcataaattttcatttattttcttctCTCCAGCATTTACAACAAC
TAACTCACATGGACGATTACAACAACCAACAACCTTACCCACCAATGTAA
AAAGAAGGACGTTCGAGTGGAAATGTTAGTAATGGAGAAATTCGCCGAAG
AAAACGTTAAGGATTCACTGAATATAAACGTCGATGATCGTTTACCATCG
CCCTCTTGCGCACATAACAAATATACCAGTTGGGTTCCCTTGGCACTGCT
ATCGATCACCGTAATCATCAAGTTACACAAATCTTGCTCAAGTCAATAAA
GCGGAACCCGGAAATCCGATAAAGCCGGAACAAAGAATCAAGGCGAAGGC
GAAAGTAATTGCTCGAGCTTGAGCCAAAGAATGAACTTTCAAATTGTGTC
TCAAAATGTCAAGACTTATTTGTTCCGAAAATGGAGAACTGTTTATAAAT
AAACAGTTGCAAAAATTAATATATTAAAGATTTTCTATAGACATAttgta
catttaaaaaaattatagttcaaaattatttataccgcttttgtatatat
ttcaaaatattatcataaaCTGGGAAGGGATACTTTCGTTAGATGAAAGC
TCTCTCATCCAAACCGTTCaagtcaattttcaataagTAGGGCAcatttt
aattttgtaaaaaaagagaaaattttatgAGATTTTATTGGTAGGAATTT
TGTGTAAATTTATAAACGAACTGTTTGTTTTAATTTATagtttttcatat
atttttcaggaCTTTATTCATAATGGTAGATAGATAAAAATGTGGACTTT
TGATTCACAAAACTATATGGCTCGTTGTGTCACTTTTCTTATTCTTTctc
attgcaaaatattttggaaataccctcttcaaatacattttaaaTTGGGA
ATAAAAATCGATTGAAATTACTGAAAATAAAAGTCCAGATCGAGTGCCTT
Coding sequence (CDS) from alignment at scaffold_145:373730..376379+ >TCONS_00048661 ID=TCONS_00048661|Name=TCONS_00048661|organism=Clytia hemisphaerica|type=CDS|length=1140bp|location=Sequence derived from alignment at scaffold_145:373730..376379+ (Clytia hemisphaerica)
ATGAAGATGATCAAACATGAAGATTTGTATTACGAAGATTATTCGTCGCA
TTCGTCTTCCGAAAACGAAAACGACTCTTTGGACGGCGAGAATTGTCGGC
TTCCAAAACGAACAAAAGTCGATTGCACGAAACGACTCAAAGCGAGCGCT
CGCGAACGACGCAGAAGGCATGTACTAAACGACGCTTTGGAACGGTTACG
TCGCAAGGTGCCCAGTGTCGGGTCACGATCATCGAAACTCTCCAAAATCG
AAGTCTTACGTATGGCGATCGACTACATTGGAATGTTATCTTATTACGTC
AGTTCATCACCCGATCAACAAAGTTTTCATTACTCTCAACAAGACGAACA
ACAAGTCCCACAGTTAGAACATTATCAACAACAAGCCATGTACAACAATA
ATAATAACCTGATCTCATATCAAGCGGACGCTTATCTACAACAGCACGCT
TGGCAACAACAAGGATCACCTGTGATGAATGAAATGAACCAAATGCTAGA
GATGCAGCATTTACAACAACTAACTCACATGGACGATTACAACAACCAAC
AACCTTACCCACCAATGTAAATGAAGATGATCAAACATGAAGATTTGTAT
TACGAAGATTATTCGTCGCATTCGTCTTCCGAAAACGAAAACGACTCTTT
GGACGGCGAGAATTGTCGGCTTCCAAAACGAACAAAAGTCGATTGCACGA
AACGACTCAAAGCGAGCGCTCGCGAACGACGCAGAAGGCATGTACTAAAC
GACGCTTTGGAACGGTTACGTCGCAAGGTGCCCAGTGTCGGGTCACGATC
ATCGAAACTCTCCAAAATCGAAGTCTTACGTATGGCGATCGACTACATTG
GAATGTTATCTTATTACGTCAGTTCATCACCCGATCAACAAAGTTTTCAT
TACTCTCAACAAGACGAACAACAAGTCCCACAGTTAGAACATTATCAACA
ACAAGCCATGTACAACAATAATAATAACCTGATCTCATATCAAGCGGACG
CTTATCTACAACAGCACGCTTGGCAACAACAAGGATCACCTGTGATGAAT
GAAATGAACCAAATGCTAGAGATGCAGCATTTACAACAACTAACTCACAT
GGACGATTACAACAACCAACAACCTTACCCACCAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048661-exon-scaffold_145-1491911889:373730..375124 | TCONS_00048661-exon-scaffold_145-1491911889:373730..375124 | Clytia hemisphaerica | exon |
| TCONS_00048661-exon-scaffold_145-1510915933:373730..375124 | TCONS_00048661-exon-scaffold_145-1510915933:373730..375124 | Clytia hemisphaerica | exon |
| TCONS_00048661-exon-scaffold_145-1575043694:373730..375124 | TCONS_00048661-exon-scaffold_145-1575043694:373730..375124 | Clytia hemisphaerica | exon |
| TCONS_00048661-exon-scaffold_145-1491911889:375467..376379 | TCONS_00048661-exon-scaffold_145-1491911889:375467..376379 | Clytia hemisphaerica | exon |
| TCONS_00048661-exon-scaffold_145-1510915933:375467..376379 | TCONS_00048661-exon-scaffold_145-1510915933:375467..376379 | Clytia hemisphaerica | exon |
| TCONS_00048661-exon-scaffold_145-1575043694:375467..376379 | TCONS_00048661-exon-scaffold_145-1575043694:375467..376379 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:373730..376379 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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