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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048628 ID=TCONS_00048628|Name=TCONS_00048628|organism=Clytia hemisphaerica|type=transcript|length=3031bpRun BLAST on NCBI protein sequence of TCONS_00048628-protein >TCONS_00048628-protein ID=TCONS_00048628-protein|Name=TCONS_00048628-protein|organism=Clytia hemisphaerica|type=polypeptide|length=792bp MGPFKPVRVKEQKCLVVMPSGDDIDIGVTNVMKGRSLLDLVCKKVGIIEKRun BLAST on NCBI transcript from alignment at scaffold_145:126135..167649+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048628 ID=TCONS_00048628|Name=TCONS_00048628|organism=Clytia hemisphaerica|type=transcript|length=41515bp|location=Sequence derived from alignment at scaffold_145:126135..167649+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_145:126135..167649+ >TCONS_00048628 ID=TCONS_00048628|Name=TCONS_00048628|organism=Clytia hemisphaerica|type=CDS|length=35685bp|location=Sequence derived from alignment at scaffold_145:126135..167649+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048628 vs. Swiss-Prot (Human)
Match: E41L1 (Band 4.1-like protein 1 OS=Homo sapiens GN=EPB41L1 PE=1 SV=2) HSP 1 Score: 164.466 bits (415), Expect = 2.148e-41 Identity = 93/321 (28.97%), Postives = 162/321 (50.47%), Query Frame = 2
Query: 104 RVKEQKCLVVMPSGDDIDIGVTNVMKGRSLLDLVCKKVGIIEKEYFGFKYVHHKDKKYTWLKLDKSLSRQISKQKYEVEFHVQFWPKSPYSVKHDIARYQMFLETRQKILSGSLTTTIPVQALLASFIVQAEYSDWVEN---ADYIKQIEAGDIKFFPDQPKGFGEQVSQFHQQNIGTSPAEAELLYLENARKLALHGMEMHPALDENHVSIVLGINYEGIQVLHNGVILNKLLWEHVYKVKKKASMLNVGLKMMLEDNAFNKLKVHFKSPTQQDLKRLHHQA--HAQWMQIQKPENRKIDISGDTPTKGFKRVDSK-RFS 1048
+ K C V + + + V +G+ L DLVC+ + ++EK+YFG + D + WL K + +QI + F V+F+P P + DI RY + L+ R I++G L + ALL S+ VQAE D+ +Y+ ++ +F P+Q + E++ + H+ G +P EAE+ +LENA+KL+++G+++H A D + I+LG+ G+ + + + +N+ W + K+ K S N +K+ + + + FK P + KRL H + ++ PE P KGF + SK R+S
Sbjct: 93 KYKSAICRVTLLDASEYECEVEKHGRGQVLFDLVCEHLNLLEKDYFGLTFCD-ADSQKNWLDPSKEIKKQIRSSPWNFAFTVKFYPPDPAQLTEDITRYYLCLQLRADIITGRLPCSFVTHALLGSYAVQAELGDYDAEEHVGNYVSEL-----RFAPNQTRELEERIMELHKTYRGMTPGEAEIHFLENAKKLSMYGVDLHHAKDSEGIDIMLGVCANGLLIYRDRLRINRFAWPKILKISYKRS--NFYIKIRPGEYEQFESTIGFKLPNHRSAKRLWKVCIEHHTFFRLVSPE---------PPPKGFLVMGSKFRYS 396 The following BLAST results are available for this feature:
BLAST of TCONS_00048628 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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