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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048627 ID=TCONS_00048627|Name=TCONS_00048627|organism=Clytia hemisphaerica|type=transcript|length=2069bp
aggaaaaaattgtttaaactactcaaacaaaattgtgaaatttaatCAAT
ACGATGAAATTAAGCTCGATGAAATCTTACTTCAATTTTGACATCTATAT
CAGGCCATACCAGAGTGTCTGACGGATCTTTAGGGTTGTTCCATACTACA
ACAACTTTATGCAGATATTTCATTCCTGAAAGTCTTTGCAACGCCTCCAT
GAGAATAACTTCCCGGTCATAAGTCAACATAAGTACTGTGAACTGTTCAA
CAGGGTAGTCACCACCTAGAGACCGTGCAAAGGGGATCCCATCCCCACCT
TTGCCATCCCCTATAGGACTGTAATTATCAACACCTTCTACAGTGAATTG
GTATTCTGAAGGGAGTGGAGTCTGAAATGGGTTGACAGGGATGGTGTGTA
AGGCACCTGGATAGGTGTTCCATAATCTATGTTTATCAACCCCAATGGTT
GataaattatgtgaaaaataatgTTGAGGTGTATTAGATAAAGCAGCATT
TCCAATAGTTTTTATAGTCATTGCTTTGTGGTCTTTATGCATAGTTGGAT
GGAGACCAATATTAGTCTGTATGTTAGAAATGATCGTTCTCAGATACTTG
TATTGAGATGCAAAATAAGTCTGATAGAAAAATCTGCCATTCCGCTTGAG
CGAGATAAAGTCTTCTGTTGGTAGGCTTCTTAACAGATATATTAGCTCTG
GAAGCCTCTGGTAGTGTAAGACCACTGATGCTGTTTTCCAGTCTATTGTG
TTTGTAAATGGTAGTAGACTGTGGTCACCAATGAATACGGGTACACAGGC
TACAGCTAACGTCTCAATAATGTTTGTgtgtaaaaataaattattcttGT
AAGTGGGTATAACACAAAATCTAGATTTCTTGGAAATTTGTCTGTTGTCC
TTACAAAAACACCAGCCATGTGTACATGATGTGTAATACGCTTCAGTGCA
TTTTGACTGTATAAAAATATCACGTTCTTTTGTTTCATTCATTATCAATC
TTTGCAAATTATCAAGTAATAGTTTGGAGGATTCATCCGAATTGGGTAAA
AAAGCGTATGTAAACGAGACCAGATATTGTCTTTGAACTGGTAGTATAGG
TGGTAACTCCTTCCATATATTATTAACAGTTTGTGTCGGTAAATTAGCTG
GCATTATCAAGTCATAACTAGCTCTATACGTTGGACATAAGTAAGGCTGA
ATCTGAATAACATTGGCTGGTATTATTAGTTGATGCACTGTTTTGCAGAA
TAAGTCAGCATCATTAGTATTTGAATCTGAATTAATAATTAGTAGATGAT
TTCCAGGTTTGTCAGTAATATCCTTATTGATGACACTGGCTAACCTGGAA
GTGTCTTTTGTCAGTGTAACACTGTGTAGTTGCACACAAGCACCGTTCTT
ATTTGAAGAATAATCTGTCTCTCCTTTTATTGATTTCAATAAATCATTGC
TGTTAGCTGAACTTGGTGAaatatgaaattgaaatgtCTTGATGACAGAG
CATTGAGTAAAATCAAAGCATTTTTGAAAGTTACAATCAATGTCTTGATT
CGTTTTTGGAGCAATGATGATTAAGGGATCAGTCTTCAAAGGCACGCcga
caaaaattttatttgtcaCAATTTTCTGGCTTCGAATACGCTGATAATTG
GCAGCATCACGTTTTGCAATCTGAATCTTTTTATTCAACCCTTTCAATTC
GATCAATAATTTATCCTTCTCTTGAGAACTCTTGAACACATCTCTTTGCA
AATAAGTCCTTTGGCGATCCAACTTGGTAATaaattttaatgctttaaat
ttGACAGACGTTAATTCTTTTATCTGTTCTTCCAGTGCATCaatctttct
ctttttcaaATCTACATCTTCATACAGTATCTTTCTTGATTCTAAATAGT
CGTCTTCGTTGGATGTACTGGTGTTTGGTTGCAACAACAATGCAATTTGA
ATGAACAATGGTACCACAATGCCAAACAAGATGACAACTATAAGGACTGT
TTTGAAATTGCACATTTGATTGTTCATCCTGCTGCTGGTGGAGGCGAGTG
GAGCAGATCTCAATGCGTc Run BLAST on NCBI transcript from alignment at scaffold_145:117510..119757+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048627 ID=TCONS_00048627|Name=TCONS_00048627|organism=Clytia hemisphaerica|type=transcript|length=2248bp|location=Sequence derived from alignment at scaffold_145:117510..119757+ (Clytia hemisphaerica)
aggaaaaaattgtttaaactactcaaacaaaattgtgaaatttaatCAAT
ACGATGAAATTAAGCTCGATGAAATCTTACTTCAATTTTGACATCTATAT
CAGGCCATACCAGAGTGTCTGACGGATCTTTAGGGTTGTTCCATACTACC
ACAACTTTATGCAGATATTNTCTATATCAGGCCATACCAGAGTGTCTGAC
GGATCTTTAGGGTTGTTCCATACTACAACAACTTTATGCAGATATTTCAT
TCCTGAAAGTCTTTGCAACGCCTCCATGAGAATAACTTCCCGGTCATAAG
TCAACATAAGTACTGTGAACTGTTCAACAGGGTAGTCACCACCTAGAGAC
CGTGCAAAGGGGATCCCATCCCCACCTTTGCCATCCCCTATAGGACTGTA
ATTATCAACACCTTCTACAGTGAATTGGTATTCTGAAGGGAGTGGAGTCT
GAAATGGGTTGACAGGGATGGTGTGTAAGGCACCTGGATAGGTGTTCCAT
AATCTATGTTTATCAACCCCAATGGTTGataaattatgtgaaaaataatg
TTGAGGTGTATTAGATAAAGCAGCATTTCCAATAGTTTTTATAGTCATTG
CTTTGTGGTCTTTATGCATAGTTGGATGGAGACCAATATTAGTCTGTATG
TTAGAAATGATCGTTCTCAGATACTTGTATTGAGATGCAAAATAAGTCTG
ATAGAAAAATCTGCCATTCCGCTTGAGCGAGATAAAGTCTTCTGTTGGTA
GGCTTCTTAACAGATATATTAGCTCTGGAAGCCTCTGGTAGTGTAAGACC
ACTGATGCTGTTTTCCAGTCTATTGTGTTTGTAAATGGTAGTAGACTGTG
GTCACCAATGAATACGGGTACACAGGCTACAGCTAACGTCTCAATAATGT
TTGTgtgtaaaaataaattattcttGTAAGTGGGTATAACACAAAATCTA
GATTTCTTGGAAATTTGTCTGTTGTCCTTACAAAAGCACCAACCATGTGT
ACATGATTTGTAATACCCCTCAGTGCATTTGGACTGTATAAAAATATCAC
GTTCTTTTGCCGTGTTCATTATCAATCNCTTACAAAGACACCAGCCATGT
GTACATGATGTGTAATACGCTTCAGTGCATTTTGACTGTATAAAAATATC
ACGTTCTTTTGTTTCATTCATTATCAATCTTTGCAAATTATCAAGTAATA
GTTTGGAGGATTCATCCGAATTGGGTAAAAAAGCGTATGTAAACGAGACC
AGATATTGTCTTTGAACTGGTAGTATAGGTGGTAACTCCTTCCATATATT
ATTAACAGTTTGTGTCGGTAAATTAGCTGGCATTATCAAGTCATAACTAG
CTCTATACGTTGGACATAAGTAAGGCTGAATCTGAATAACATTGGCTGGT
ATTATTAGTTGATGCACTGTTTTGCAGAATAAGTCAGCATCATTAGTATT
TGAATCTGAATTAATAATTAGTAGATGATTTCCAGGTTTGTCAGTAATAT
CCTTATTGATGACACTGGCTAACCTGGAAGTGTCTTTTGTCAGTGTAACA
CTGTGTAGTTGCACACAAGCACCGTTCTTATTTGAAGAATAATCTGTCTC
TCCTTTTATTGATTTCAATAAATCATTGCTGTTAGCTGAACTTGGTGAaa
tatgaaattgaaatgtCTTGATGACAGAGCATTGAGTAAAATCAAAGCAT
TTTTGAAAGTTACAATCAATGTCTTGATTCGTTTTTGGAGCAATGATGAT
TAAGGGATCAGTCTTCAAAGGCACGCcgacaaaaattttatttgtcaCAA
TTTTCTGGCTTCGAATACGCTGATAATTGGCAGCATCACGTTTTGCAATC
TGAATCTTTTTATTCAACCCTTTCAATTCGATCAATAATTTATCCTTCTC
TTGAGAACTCTTGAACACATCTCTTTGCAAATAAGTCCTTTGGCGATCCA
ACTTGGTAATaaattttaatgctttaaatttGACAGACGTTAATTCTTTT
ATCTGTTCTTCCAGTGCATCaatctttctctttttcaaATCTACATCTTC
ATACAGTATCTTTCTTGATTCTAAATAGTCGTCTTCGTTGGATGTACTGG
TGTTTGGTTGCAACAACAATGCAATTTGAATGAACAATGGTACCACAATG
CCAAACAAGATGACAACTATAAGGACTGTTTTGAAATTGCACATTTGATT
GTTCATCCTGCTGCTGGTGGAGGCGAGTGGAGCAGATCTCAATGCGTc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048627-exon-scaffold_145-1491911889:117510..117612 | TCONS_00048627-exon-scaffold_145-1491911889:117510..117612 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1510915933:117510..117612 | TCONS_00048627-exon-scaffold_145-1510915933:117510..117612 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1575043694:117510..117612 | TCONS_00048627-exon-scaffold_145-1575043694:117510..117612 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1491911889:117690..118494 | TCONS_00048627-exon-scaffold_145-1491911889:117690..118494 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1510915933:117690..118494 | TCONS_00048627-exon-scaffold_145-1510915933:117690..118494 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1575043694:117690..118494 | TCONS_00048627-exon-scaffold_145-1575043694:117690..118494 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1491911889:118597..119757 | TCONS_00048627-exon-scaffold_145-1491911889:118597..119757 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1510915933:118597..119757 | TCONS_00048627-exon-scaffold_145-1510915933:118597..119757 | Clytia hemisphaerica | exon |
| TCONS_00048627-exon-scaffold_145-1575043694:118597..119757 | TCONS_00048627-exon-scaffold_145-1575043694:118597..119757 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_145 | supercontig | scaffold_145:117510..119757 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016757 | transferase activity, transferring glycosyl groups |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0016757 |
transferase activity, transferring glycosyl groups |
Blast
BLAST of TCONS_00048627 vs. Swiss-Prot (Human)
Match: EXTL3 (Exostosin-like 3 OS=Homo sapiens GN=EXTL3 PE=1 SV=1) HSP 1 Score: 211.075 bits (536), Expect = 8.525e-58 Identity = 175/652 (26.84%), Postives = 303/652 (46.47%), Query Frame = -1
Query: 78 LKFITKLDRQRTYLQRDVFKSSQEKDKLLIELKGLNKKIQI-------AKRDAANYQRIRSQK-------IVTNKIFVGVPLK----TDPLIIIAPKTNQDIDCNFQKCFDFTQCSVIKTFQFHISPS-----SANSNDLLK-----SIKGETDYSSNKNGACVQLHSVTLTKDTSRL-ASVINKDITDKP-----GNHLLIINSDSNTNDADLF--CKTVHQLIIPANVIQIQPYLCPTYRASYDLIMPANLPTQTVNNIWKELPPILPVQRQYLVSF---TYAFLPNSDESSKLLLDNLQ---------RLI-----MNETKERDIFIQSKCTEAYYTSCTHGWCFC---KDNRQISKKSRFCVIPTYKNNLFL-----HTNIIETLAVACVPVFIGDHSLLPFTNTIDWKTASVVLHYQRLPELIYLLRSLPTEDFISLKRNGRFFYQTYFASQYKYLRTIISNIQTNIGLHPTMHKDHKAMTIKTIGNAALSNTPQHY--------------------FSHNLSTIGVDKHRLWNTYPGALHTIPVNPFQTPLPSEYQFTVEGVDNYSXXXXXXXXXXXPFARSLGGDYPVEQFTVLMLTYDREVILMEALQRLSGMKYLHKVVVVWNNPKDPSDTLVWPDIDVKIEV 1790
+K + L R R + ++ + ++ +L E+ LN KI+ AK+D + + SQ + N+ + +P++ D + PK + C CFD+++C + F ++ S + + L+K + + + N + AC+ + V ++ L + + K + P G++ +IIN ++ +L T ++ + +Q YR +DL++ + + N + E+PP +PV+R+YL +F L +S + ++ + ++ R+I + ++K + ++ C S W C +D ++ K S F +I T + + T + E L V VPV +G+ LP+ + + W A++V+ R+ E+ +LLRSL D ++++R GRF ++TYF++ T+++ I+T I + ++ A I A P + N + D +R WN PG H P PF LPSE +F G + PIG G GG G F +LGG+ P EQFTV+MLTY+RE +LM +L+RL+G+ YL+KVVVVWN+PK PS+ L+WPDI V I V
Sbjct: 76 VKHVLDLCRIRESVSEELLQLEAKRQELNSEIAKLNLKIEACKKSIENAKQDLLQLKNVISQTEHSYKELMAQNQPKLSLPIRLLPEKDDAGLPPPKATRG--CRLHNCFDYSRCPLTSGFPVYVYDSDQFVFGSYLDPLVKQAFQATARANVYVTENADIACLYVILVGEMQEPVVLRPAELEKQLYSLPHWRTDGHNHVIINLSRKSDTQNLLYNVSTGRAMVAQSTFYTVQ------YRPGFDLVVSPLVHAMSEPN-FMEIPPQVPVKRKYLFTFQGEKIESLRSSLQEARSFEEEMEGDPPADYDDRIIATLKAVQDSKLDQVLVEFTCKNQPKPSLPTEWALCGEREDRLELLKLSTFALIITPGDPRLVISSGCATRLFEALEVGAVPVVLGEQVQLPYQDMLQWNEAALVVPKPRVTEVHFLLRSLSDSDLLAMRRQGRFLWETYFSTADSIFNTVLAMIRTRIQIPAAPIREEAAAEIPHRSGKAAGTDPNMADNGDLDLGPVETEPPYASPRYLRNFTLTVTDFYRSWNCAPGPFHLFPHTPFDPVLPSEAKFLGSGT-GFRPIGGGAGGSGKEFQAALGGNVPREQFTVVMLTYEREEVLMNSLERLNGLPYLNKVVVVWNSPKLPSEDLLWPDIGVPIMV 717
The following BLAST results are available for this feature:
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