TCONS_00048568 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048568
Unique NameTCONS_00048568
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048568 ID=TCONS_00048568|Name=TCONS_00048568|organism=Clytia hemisphaerica|type=transcript|length=473bp
GCACAATCGGCCAACATGCATTTGTCTCTTGAAATGAAACGtgagatttt
caaaatgaaaaatgaattcgATCAAAAATTAACAGGGAAAGATATCGAAA
TtcaacaaatgaaaaaagaattcgATCAAAAATTAACAGCGAAAGATCTC
GAAGctcaacaaatgaaaaatgaatttgctGGACAGTTGAAAATGAGGGA
TAACGAAATCGGAAAAGTCCGGTTGGATCTTGATCGAGATTTGAAAGCAA
AAGACAAAATTATTCAAGCATTAGCAGAAAGATTAAAAATTGCAGAAGAG
AAATTGAAAGGGATCGGCGAAATGGAAATCAAAGTTCAGATGAACCAAAC
CGCCATCAAATCGTTGGAGAAAAAATTGCTGACGAAGTTGAAGACAACCG
ATAAATCTCTTTTTGAGTTGAAAGAAGAATTTATGCTGACTAAGCAGGAA
gttgaaaaagtcaaagaacGGCA
Run BLAST on NCBI

protein sequence of TCONS_00048568-protein

>TCONS_00048568-protein ID=TCONS_00048568-protein|Name=TCONS_00048568-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
AQSANMHLSLEMKREIFKMKNEFDQKLTGKDIEIQQMKKEFDQKLTAKDL
EAQQMKNEFAGQLKMRDNEIGKVRLDLDRDLKAKDKIIQALAERLKIAEE
KLKGIGEMEIKVQMNQTAIKSLEKKLLTKLKTTDKSLFELKEEFMLTKQE
VEKVKER
Run BLAST on NCBI

transcript from alignment at scaffold_143:39625..40097

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048568 ID=TCONS_00048568|Name=TCONS_00048568|organism=Clytia hemisphaerica|type=transcript|length=473bp|location=Sequence derived from alignment at scaffold_143:39625..40097 (Clytia hemisphaerica)
TGCCgttctttgactttttcaacTTCCTGCTTAGTCAGCATAAATTCTTC
TTTCAACTCAAAAAGAGATTTATCGGTTGTCTTCAACTTCGTCAGCAATT
TTTTCTCCAACGATTTGATGGCGGTTTGGTTCATCTGAACTTTGATTTCC
ATTTCGCCGATCCCTTTCAATTTCTCTTCTGCAATTTTTAATCTTTCTGC
TAATGCTTGAATAATTTTGTCTTTTGCTTTCAAATCTCGATCAAGATCCA
ACCGGACTTTTCCGATTTCGTTATCCCTCATTTTCAACTGTCCagcaaat
tcatttttcatttgttgagCTTCGAGATCTTTCGCTGTTAATTTTTGATc
gaattcttttttcatttgttgaATTTCGATATCTTTCCCTGTTAATTTTT
GATcgaattcatttttcattttgaaaatctcaCGTTTCATTTCAAGAGAC
AAATGCATGTTGGCCGATTGTGC

Coding sequence (CDS) from alignment at scaffold_143:39625..40097

>TCONS_00048568 ID=TCONS_00048568|Name=TCONS_00048568|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_143:39625..40097 (Clytia hemisphaerica)
CCgttctttgactttttcaacTTCCTGCTTAGTCAGCATAAATTCTTCTT
TCAACTCAAAAAGAGATTTATCGGTTGTCTTCAACTTCGTCAGCAATTTT
TTCTCCAACGATTTGATGGCGGTTTGGTTCATCTGAACTTTGATTTCCAT
TTCGCCGATCCCTTTCAATTTCTCTTCTGCAATTTTTAATCTTTCTGCTA
ATGCTTGAATAATTTTGTCTTTTGCTTTCAAATCTCGATCAAGATCCAAC
CGGACTTTTCCGATTTCGTTATCCCTCATTTTCAACTGTCCagcaaattc
atttttcatttgttgagCTTCGAGATCTTTCGCTGTTAATTTTTGATcga
attcttttttcatttgttgaATTTCGATATCTTTCCCTGTTAATTTTTGA
TcgaattcatttttcattttgaaaatctcaCGTTTCATTTCAAGAGACAA
ATGCATGTTGGCCGATTGTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030879XLOC_030879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048568-exon-scaffold_143-1491911889:39625..40097TCONS_00048568-exon-scaffold_143-1491911889:39625..40097Clytia hemisphaericaexon
TCONS_00048568-exon-scaffold_143-1510915933:39625..40097TCONS_00048568-exon-scaffold_143-1510915933:39625..40097Clytia hemisphaericaexon
TCONS_00048568-exon-scaffold_143-1575043694:39625..40097TCONS_00048568-exon-scaffold_143-1575043694:39625..40097Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048568-proteinTCONS_00048568-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:39625..40097 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.150772	0.262094	0.304316	0.190113	0.362452	0.286415	0.889907	0.161749	0.132071	0.632192	0.617725	0.110117	0.951274	0.54014	0.763085	0.409453	0.100883	0.310204	1.99997	0.617714	1.36828	0.915327	0.810351	0.760439	0.15689	0.386309	0	0.475379	0.507753	0.136585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048568 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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