TCONS_00048563 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048563
Unique NameTCONS_00048563
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048563 ID=TCONS_00048563|Name=TCONS_00048563|organism=Clytia hemisphaerica|type=transcript|length=812bp
TTGTCATCTTCTTCTCATCTACATTGGAGATCTCGAACGTTACGTCACAC
ACCTGCAACAAGACAACAATTATTGCCAAGCACAAAAATGTTATAGAGAA
GCTCAAATGCTGGCACCAAAGAATGGTAAATCGTACAACCAGCTAGCTGT
GGTTGCAGTCACCACAAAACGGAAACTGGACGCTGTTTATTATTATTGCA
GGAGCTTGTCAGCTAGCAATCCCATTCTGACAGCAAGAGATCGATTGACT
TCAATTTTCCATGAGATCAAGAAAAAGGCTCACGTTTTCAAACAAAGGGA
CGAGATATGGATTTTCATTCACTTGCATCAGATGTACAAAGTGATGTTGA
CAGACAACAACGAACTGGTTTATCTCACACAACCGCCCCTCAAAAATCAT
TCTTCTGTGACCGATACAGCTGTTGTCAAAAAAAAGCCATTGAGTAGAAC
CACCTCAAGACAAGATAAACTCTCCCTTTCAAAGATAAACCGTGGATACA
CGATCTACTTTCTGCATATACACTGCAAACTGTATACCAATATTGGTCTT
GAAGAATTTACGAGAGTGCATCAGGAAACACTTTCCTACTTCAAAACTTT
GTTGCAATATCCAAAAGCCTCGTCAGTCAAACAAGAAAACTTGCTGAAAT
ACATGGCTATCAATATCTTCTCCATACATATGCTCATTGAAAAACAGCAA
GGTCTACAAGAAGTAATGGCGAACACAGCACTAGACTTTGCCATTGTTTT
TGCTGTGGACATGTTCGGTGTCCTGTGTTCGCATTGCTCCAAACTGTTAT
CCTCAAACAATG
Run BLAST on NCBI

transcript from alignment at scaffold_143:489362..492964-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048563 ID=TCONS_00048563|Name=TCONS_00048563|organism=Clytia hemisphaerica|type=transcript|length=3603bp|location=Sequence derived from alignment at scaffold_143:489362..492964- (Clytia hemisphaerica)
TTGTCATCTTCTTCTCATCTACATTGGAGATCTCGAACGTTACGTCACAC
ACCTGCAACAAGACAACAATTATTGCCAAGCACAAAAATGTTATAGAGAA
GCTCAAATGCTGGCACCAAAGAATGGTAAATCGTACAACCAGCTAGCTGT
GGTTGCAGTCACCACAAAACGGAAACTGGACGCTGTTTATTATTATTGCA
GGAGCTTGTCAGCTAGCAATCCCATTCTGACAGCAAGAGATCGATTGACT
TCAATTTTCCATGAGATCAAGAAAAAGGTAAATGGTTCTCTCTGTCTCTA
TACTTAATCAAATATTTCTTACCTGTCATCAGAAATATCAACCGATCAAT
TCCAATTTTGAAAGATGTTTATCTGCTTCAACCTTGCTGATCTGAAACTT
CAAATCTTAGCTCCAAATTACCTGTTTGTTTATATGCTACTTTGTCTTTG
GGCCATTTATGTTAAGAATAAATGGAGATATAAAATTATGCCTTATCTCT
TTTACAGGCTCACGTTTTCAAACAAAGGTACGAACAACAATCATCCTCTA
TCAACAAAGAAGAAGTAATATTGCAAGAAAGAGCTGACAAACTCAACCCT
AATCATCTAAGGTTTGATGCTTGATGATATTTGGCTGATAAAAAGCCTAC
CTCGATAGTGGGGGTCAGTCAACCCTTAGGATTCGTACTGATCCGTAGTA
AGATCCTAAGGGTTGACCCCTTACTACGATTTTATATTTTTACAAAGTTA
AGTGATTCTTAATGTTAGTTTATGATAATGACCGTAATTTCATTAAGCCG
TAAGATAAAATCAATGTATTCCATGAAATCAGAACTGTGTGGACTGATTA
GATATTGAAATAAACTGTTTTATTAACAGGGACGAGATATGGATTTTCAT
TCACTTGCATCAGATGTACAAAGTGATGTTGACAGACAACAACGAACTGG
TTTATCTCACACAACCNNNNNNNNNNNNNNNNNNNNNNGGAGATCTCGAA
CGTTACGTCACACACCTGCAACAAGACAACAATTATTGCCAAGCACAAAA
ATGTTATAGAGAAGCTCAAATGCTGGCACCAAAGAATGGTAAATCGTACA
ACCAGCTAGCTGTGGTTGCAGTCACCACAAAACGGAAACTGGACGCTGTT
TATTATTATTGCAGGAGCTTGTCAGCTAGCAATCCCATTCTGACAGCAAG
AGATCGATTGACTTCAATTTTCCATGAGATCAAGAAAAAGGTAAATGGTT
CTCTCTGTCTCTATACTTAATCAAATATTTCTTACCTGTCATCAGAAATA
TCAACCGATCAATTCCAATTTTGAAAGATGTTTATCTGCTTCAACCTTGC
TGATCTGAAACTTCAAATCTTAGCTCCAAATTACCTGTTTGTTTATATGC
TACTTTGTCTTTGGGCCATTTATGTTAAGAATAAATGGAGATATAAAATT
ATGCCTTATCTCTTTTACAGGCTCACGTTTTCAAACAAAGGTACGAACAA
CAATCTATCAACAAAGAAGAAGTGATATTGCAAGAAAGAGCTGACAAACT
CAACCCTAATCATCTAAGGTTTGATGCTTGATATTTGGCTGATAAGAAGC
CTCCCTAGATAGTGGGGGTCAGTCAACCCTTAGGATTCGTACTGATCCGT
AGTAAGATCCTAAGGGTTGACCCCTTACTACGATTTTATATTTTTACAAA
GTTAAGTGATTCTTAATGTTAGTTTATGATAATGACCGTAATTTCAATAA
GCCGTAAGATAAAATCAATGTATTCCATGAAATCAGAACTGTGTGGACAT
AATATTGATTAGATATTAAAATAAACTGTTTTATTAACAGGGACGAGATA
TGGATTTTCATTCACTTGCATCAGATGTACAAAGTGATGTTGACAGACAA
CAACGAACTGGTTTATCTCACACAACCGCCCCTCAAAAATCATTCTTCTG
TGACCGATACAGCTGTTGTCAAAAAAAAGCCATTGAGTAGAACCACCTCA
AGACAAGATAAACTCTCCCTTTCAAAGGTTTGCCACATTTAAAATGTGCT
AAAAGGCGCCACTCCCTTGATGTTTTTACGTACTTTAATATAAATACATT
GATGTTCACAAACAAATTTAGTCATTCGGTCGTGGCTTGATCTCATAATA
ACATTTTTCCAACAAAACCACAACAAAAATATTCGGCAGTAGTTACTAAT
TGTTTTAAATATTTCTACTTCTTTCACTCCCCTCCCCCCAAGTACAATGG
TTAAGTCTGCAGCCCCTTCAACAATTCAAAGTTTTGGGAATGGGCCTTAG
GGAGGGGAGTGAGTAAATTAAAGAGACCTTTGAAAATTATTTCAAGGATC
AAAACAATTTCAAATCACCCTCAGATATGATTTTCAGTCATTTTGAGCAA
TTTTGAAAATTTTACTTTAAGTGTTTTTTGGACTAGTGCCAATATATTAT
TGAAGCGATTGAAGATTTTGACTTTTATTGTTTAGATAAACCGTGGATAC
ACGATCTACTTTCTGCATATACACTGCAAACTGTATACCAATATTGGGTG
AGCTAAATTTCAGTCATTATTATTGCGCCAAATATTTATTCGCGATTTTT
TTTAAACATACAGGGCGTCTCGAAAAAATTCCTTTATATGTATGTTCATC
AGTTTATTGCGTTTCTGTTTATGAAAGTGTTAAAAATGACCGTGTCGTGT
TAAAGAGGGAAGCAACAGCCACACACACAAGAGCTTATGTAATCGTGTTC
TGACATAGGATTTTTTTCGGGACACCCTGTAGTATCCAACCTGATCACCC
TCACTCGTTCCATTTCCATTTTTTTTCCTTTCCATTTTAGTCTTGAAGAA
TTTACGAGAGTGCATCAGGAAACACTTTCCTACTTCAAAACTTTGTTGCA
ATATCCAAAAGCCTCGTCAGTCAAACAAGAAAACTTGCTGAAATACATGG
CTATCAATATCTTCTCCATACATATGCTCATTGAAAAACAGCAAGGTGGG
TGTAGGTTTTGGTAGAAAAATATGATGTTGTTTCTTGATAAGGAATTGTA
TCGAATAGTGTATAGAGTTTGGAACACCACCTGTCTTTTACCTTAACACG
AATATTACTAGTCATTTTATTAACACGAGTTCAAAAATTTCGTGTAAATA
AAAACCCCCTTAATTAAAACCAGCCGCTGTTTCCTTGAAAAAGCAGAAAC
ATTGGTGTTAATTTCAGATCGTTCAAATTTCAAGGCCGTTTAAATACTTG
CCTAGTAATATTTGTGTAATAAGGTATGTTGAATTGTACTTGCTTTGAGA
TGAACTACTTTAATTGAATCTCTATTATTTAGATCTTTCTGAGATTCGAA
CCAAAAAACTGGACTCCTTAGCTGGAAAATGGTTAAAATTACTCTCCGTA
ATTCGAATTTTTTTCTAATTCGGATAAATATTTTGGTTCCTTGACGATCG
AATTAGAGAGTCGACTATATTTCGCTTTCATACTTACTACAGGTCTACAA
GAAGTAATGGCGAACACAGCACTAGACTTTGCCATTGTTTTTGCTGTGGA
CATGTTCGGTGTCCTGTGTTCGCATTGCTCCAAACTGTTATCCTCAAACA
ATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030878XLOC_030878Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048563-exon-scaffold_143-1575043694:492688..492964TCONS_00048563-exon-scaffold_143-1575043694:492688..492964Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1575043694:491475..491494TCONS_00048563-exon-scaffold_143-1575043694:491475..491494Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1575043694:490938..491124TCONS_00048563-exon-scaffold_143-1575043694:490938..491124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1575043694:490418..490479TCONS_00048563-exon-scaffold_143-1575043694:490418..490479Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1575043694:489970..490124TCONS_00048563-exon-scaffold_143-1575043694:489970..490124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1575043694:489362..489472TCONS_00048563-exon-scaffold_143-1575043694:489362..489472Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:492688..492964TCONS_00048563-exon-scaffold_143-1510915933:492688..492964Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:491475..491494TCONS_00048563-exon-scaffold_143-1510915933:491475..491494Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:490938..491124TCONS_00048563-exon-scaffold_143-1510915933:490938..491124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:490418..490479TCONS_00048563-exon-scaffold_143-1510915933:490418..490479Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:489970..490124TCONS_00048563-exon-scaffold_143-1510915933:489970..490124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1510915933:489362..489472TCONS_00048563-exon-scaffold_143-1510915933:489362..489472Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:492688..492964TCONS_00048563-exon-scaffold_143-1491911889:492688..492964Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:491475..491494TCONS_00048563-exon-scaffold_143-1491911889:491475..491494Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:490938..491124TCONS_00048563-exon-scaffold_143-1491911889:490938..491124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:490418..490479TCONS_00048563-exon-scaffold_143-1491911889:490418..490479Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:489970..490124TCONS_00048563-exon-scaffold_143-1491911889:489970..490124Clytia hemisphaericaexon
TCONS_00048563-exon-scaffold_143-1491911889:489362..489472TCONS_00048563-exon-scaffold_143-1491911889:489362..489472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:489362..492964 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0251818	0.667121	0.0195255	0.191375	0	1.95888	0	0.184663	0.824983	0	0.220031	0.270297	1.23045	0.555906	0	0	2.65991	0.491264	4.22861e-05	0.661299	0.417229	0.555491	0.628832	0.264559	0	0	0.934715	2.10348	0.703049	0.0208265
Blast
[Close]
BLAST of TCONS_00048563 vs. Swiss-Prot (Human)
Match: EST1A (Telomerase-binding protein EST1A OS=Homo sapiens GN=SMG6 PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 8.325e-41
Identity = 94/272 (34.56%), Postives = 143/272 (52.57%), Query Frame = 2 
Query:   14 LIYIGDLERYVTHLQQDNNYCQAQKCYREAQMLAPKNGKSYNQLAVVAVTTKRKLDAVYYYCRSLSASNPILTARDRLTSIFHEIKKKAHVFKQRDEIWIFIHLHQ-------MYKVMLTDNNELVYLTQPPLKNHSSVTDTAVVKKKPLSRTTSRQDKLSLSKINRGYTIYFLHIHCKLYTNIGLEEFTRVHQETLSYFKTLLQYPKASSVKQENLLKYMAINIFSIHMLIEKQQGLQEVMANTALDFAIVFAVDMFGVLCSHCSKLLSSN 808
            +I  GD+ RY        NY +A+  Y +AQ +APKNG+ YNQLA++AV T+RKLDAVYYY RSL+ASNPILTA++ L S+F E K+KA   +++      +   Q        ++ +  D   L     P     S  T++        S   +    LS S +N+ + + FLH H KL+T IG+E F  V ++ L  F+ LLQ+   S +    +L+ M IN+F++H   + +    E   +   + A    + MF +L   C+ LL  +
Sbjct:  729 MICQGDIARYREQASDTANYGKARSWYLKAQHIAPKNGRPYNQLALLAVYTRRKLDAVYYYMRSLAASNPILTAKESLMSLFEETKRKAEQMEKKQHEEFDLSPDQWRKGKKSTFRHVGDDTTRLEIWIHPSHPRSSQGTESG-----KDSEQENGLGSLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEKVLKEFQVLLQH-SPSPIGSTRMLQLMTINMFAVHN-SQLKDCFSEECRSVIQEQAAALGLAMFSLLVRRCTCLLKES 993
The following BLAST results are available for this feature:
BLAST of TCONS_00048563 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EST1A8.325e-4134.56Telomerase-binding protein EST1A OS=Homo sapiens G... [more]
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