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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048560 ID=TCONS_00048560|Name=TCONS_00048560|organism=Clytia hemisphaerica|type=transcript|length=1118bp
attttgacTATCCTATTACaattttcgtccgtcgtcgtgatatTAACCTT
GTAATATTGTACTCTAGGACCACTGGTTGGTGCATTTTGGGGCTTCAATT
TAGCAGAAGGGACAACAGGGAACAGTGAGCGTTCACTACGTGAATTATGC
GACGAAACTTCATATAAAATAATCGTCCTCAACACACTTGCTGACGACGA
AGATGATCAAAACAAAGACAACCTACCAAGCCTCTCCTTCTCCAGACACT
GTCACCAACCGTACGGTCCAGCCTACAAATCGTACCTCAAATGCCCACAG
ATGGAACAAGATATTAAATACTGTCAATCAAAAGGTGTTAAAATCGTTCT
CAGTATTGGTGGCAGTACTCGATTCATCGGATTCGGAGATgcgaaaaaag
caaaacattttGCAGATATGTTATGGAAGTTGTTTCTAGGAGGTACTAAG
GAAGCAGAAAATGAACTGTTACCAAGAACATTTGGGTCGGCTGTTTTGGA
TGGAATCAACATTGAAGTTTTATTTGGCGATCCTTTATATTTCGTTGATT
TCGTACGCGAATTAAGGCGTGTGATGGATTCAAGTGTCAATTCTCAGAAA
TTCTTAATCACAGCCAACCCAAGCTGCATTCACCCAAGTTACATCCTCAA
AGATGCTTTCAAAGAAGCTATTGGAGCTTTCGATCATCTATTCGTTAATT
TTGATGACCAGAATTGTGATATCAACAAACCGGAGAAATTTGAGCCTGCA
TTCCAAGTGTGGTATGATTACGCAATCAAAGAGAATGGACCGAACGTTTG
GGTTGGACTAGCCTCTGATCCACGAAGAACAGCAAATGATTTCTTAAAAC
GCGAAGATGCAAAAAAGAAGTTACAGCTGATGAGGTTGCTATACAATAAA
TTTGGTGGAGTTATATTCAACGACGCGAGTTGGGATTATGAGAACAAGAA
GGACGGCGTGATGTACAGTAAATTCATATCTCAAGTTCTAGACGGTGGGT
CAGACGATCAAGAcgacgaagaggaaaagaagCAGGAAGATGAGCCAGTA
GTGACGAAGAGGAAAGAAACAAATTCAGGACCGAGATTAATCAATGGAAG
GCCGGTAGTCAATACAAG Run BLAST on NCBI protein sequence of TCONS_00048560-protein >TCONS_00048560-protein ID=TCONS_00048560-protein|Name=TCONS_00048560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=272bp
MEQDIKYCQSKGVKIVLSIGGSTRFIGFGDAKKAKHFADMLWKLFLGGTK
EAENELLPRTFGSAVLDGINIEVLFGDPLYFVDFVRELRRVMDSSVNSQK
FLITANPSCIHPSYILKDAFKEAIGAFDHLFVNFDDQNCDINKPEKFEPA
FQVWYDYAIKENGPNVWVGLASDPRRTANDFLKREDAKKKLQLMRLLYNK
FGGVIFNDASWDYENKKDGVMYSKFISQVLDGGSDDQDDEEEKKQEDEPV
VTKRKETNSGPRLINGRPVVNT Run BLAST on NCBI transcript from alignment at scaffold_143:471909..474864- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048560 ID=TCONS_00048560|Name=TCONS_00048560|organism=Clytia hemisphaerica|type=transcript|length=2956bp|location=Sequence derived from alignment at scaffold_143:471909..474864- (Clytia hemisphaerica)
ATTTTGACTATCCTATTACAATTTTCGTCCGTCGTCGTGATATTAACCTT
GTAATATTGTACTCTAGGACCACTGGTTGGTGCATTTTGGGGCTTCAATT
TAGCAGAAGGGACAACAGGGAACAGTGAGCGTTCACTACGTGAATTATGC
GACGAAACTTCATATAAAATAATCGTCCTCAACACACTTGCTGACGACGA
AGATGATCAAAACAAAGGTATGGTTTTCTATAAAGGGGGACTTAACAAAT
TATCTTATTGTTTCTTCCTGAAATGGTTGTTTCCTCTAAGAGTCGGGGTA
AAAGATTCCAACATTACATTCAACATAGAAAACGCAACGTTGGATGAATC
AGTTTATTTTAGCTCAACTCCACGAAAGATTTTTCGCCTCTTCCGGCAAC
AAACTCTTAAAAACAATTCACGTTCGAGCAATGAAAGAGTACTGACAAAT
AGAGAGTATAATACAGTGACTGTGGACTTTCTTCGAGCTTCCTCTCTGGC
CAAAAAGTGTGACCCTCAACTAGTAATTCAAGCTAATTAGAGGTAATTGG
GTTTCACGTTCGAGCCCGTCTCCCGTTCTCATCAAGGAAAAACCCTCTTT
AAATACTTATATAATTCGAGTCTCTCTGTAATTCGAACAAATAAGATTCC
CCGTTCGAACTCGAAAGCGATTTCTAAAGCAAATGAATTTTGTTTCTCAA
CACAAGCTTCTTTTTCCCAAATACTCCAAACGAACCTCAAATTAGAGAAT
GATTCTCAATCAAAGAGAACCTATTACACAACTTTTCAGTTGAATGAACC
AATGTTTTAGTTCGAATTACAGAAAGATTCGAATTATAGAGGTTTGAATT
AAGAGAGCTGACTGTTCTATTTCTTTACCTCCAGACAACCTACCAAGCCT
CTCCTTCTCCAGACACTGTCACCAACCGTACGGTCCAGCCTACAAATCGT
ACCTCAAATGCCCACAGATGGAACAAGATATTAAATACTGTCAATCAAAA
GGTGTTAAAATCGTTCTCAGTATTGGTGGCAGTACTCGATTCATCGGATT
CGGAGATGCGAAAAAAGCAAAACATTTTGCAGATATGTTATGGAAGTTGT
TTCTAGGAGGTACTAAGGAAGCAGAAAATGAACTGTTACCAAGAACATTT
GGGTAGGATTTATACTCTAATTTTCCTTTCACTGACTGCAAGGCAGCCGA
TTTCTGCTTTCTTCGAACCTTGAAAGAGAGAAAAATAATTTTTGACGCCA
CTTCAAAAGCTTGGAGATGGTGGACACTGAACATTGCAGATCGCTATATC
CTTACTAATTTTTTGGCAAGGAAGAACTTTTATCGCGATTTTAGATTATA
TTTCTATCGTATCTTTTCAGGTCGGCTGTTTTGGATGGAATCAACATTGA
AGTTTTATTTGGCGATCCTTTATATTTCGTTGATTTCGTACGCGAATTAA
GGCGTGTGATGGATTCAAGTGTCAATTCTCAGAAATTCTTAATCACAGCC
AACCCAAGCTGCATTCACCCAAGTTACATCCTCAAAGATGCTTTCAAAGA
AGCTATTGGAGCTTTCGATCATCTATTCGTTAATTTTGATGACCAGAATT
GTGATATCAACAAACCGGAGAAATTTGAGCCTGCATTCCAAGTGTGGTAT
GATTACGCAATCAAAGAGAATGGACCGAACGTTTGGGTTGGACTAGCCTC
TGATCCACGAAGAACAGCAAATGATTTCTTAAAACGCGAAGATGCAAAAA
AGAAGTTACAGGTCAGTAATATTCATGACGTAATGTTTTCCTTCAATTGC
TAGTCTCAATTGCCAGTAGTTGCAAATTTGTCATTACTGGNTAGTATGGA
AATAGACCATTTTTAGTCAAAAACCAAGAAAGATCTATCATATCAGTCAT
CCTTTCCAGCTAGGACACATTTTTGTTTCGAAACTTTTGCTGAATATTCT
TGTGTGCTCCTCATTTGTCAGTGGTGGCAAATTTTAAACAATTTATCTCA
AGCTAAAATTTGACACTTCAAAAAGCGCAAAAACTGGACAAAATAGCTGT
TTCTGGCTGAAAAACACGGTTTTCAAGGGTTAATATCTCGAGTTAGGTAC
ATAAATCACCTATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCACACCAAAGTGTCCGAAAAAAAAATG
GAAACATAGTAATTTCGATTCCCCTACCCCTTAGCTTTCCAAAAATGTAT
AACAAGTGCTTCTAACAAAACAGTCGATCGATTCCAAAAAATCGAACAAA
ATTCCCCCTACTAACTGAAGAAATTTGGAAAAACCCGGAGTTTTAACCTG
CAAAATCGAGGACGGTTAAAACACTGATTAACCGTCGTCCTCAGTCAATC
AGGATCGGGATAAATGAAAAGTTAACCGTCTACATCGTAGAAAAAACACG
GATACATAAAATCGATAGTTTCACAAAATTCGACATTTAATTTTACGATC
TATTTCTATTCCAGCTGATGAGGTTGCTATACAATAAATTTGGTGGAGTT
ATATTCAACGACGCGAGTTGGGATTATGAGAACAAGAAGGACGGCGTGAT
GTACAGTAAATTCATATCTCAAGTTCTAGACGGTGGGTCAGACGATCAAG
ACGACGAAGAGGAAAAGAAGCAGGAAGATGAGCCAGTAGTGACGAAGAGG
AAAGAAACAAATTCAGGACCGAGATTAATCAATGGAAGGCCGGTAGTCAA
TACAAG Coding sequence (CDS) from alignment at scaffold_143:471909..474864- >TCONS_00048560 ID=TCONS_00048560|Name=TCONS_00048560|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_143:471909..474864- (Clytia hemisphaerica)
CTGATGAGGTTGCTATACAATAAATTTGGTGGAGTTATATTCAACGACGC
GAGTTGGGATTATGAGAACAAGAAGGACGGCGTGATGTACAGTAAATTCA
TATCTCAAGTTCTAGACGGTGGGTCAGACGATCAAGACGACGAAGAGGAA
AAGAAGCAGGAAGATGAGCCAGTAGTGACGAAGAGGAAAGAAACAAATTC
AGGACCGAGATTAATCAATGGAAGGCCGGTAGTCAATACAGTCGGCTGTT
TTGGATGGAATCAACATTGAAGTTTTATTTGGCGATCCTTTATATTTCGT
TGATTTCGTACGCGAATTAAGGCGTGTGATGGATTCAAGTGTCAATTCTC
AGAAATTCTTAATCACAGCCAACCCAAGCTGCATTCACCCAAGTTACATC
CTCAAAGATGCTTTCAAAGAAGCTATTGGAGCTTTCGATCATCTATTCGT
TAATTTTGATGACCAGAATTGTGATATCAACAAACCGGAGAAATTTGAGC
CTGCATTCCAAGTGTGGTATGATTACGCAATCAAAGAGAATGGACCGAAC
GTTTGGGTTGGACTAGCCTCTGATCCACGAAGAACAGCAAATGATTTCTT
AAAACGCGAAGATGCAAAAAAGAAGTTACAGATGGAACAAGATATTAAAT
ACTGTCAATCAAAAGGTGTTAAAATCGTTCTCAGTATTGGTGGCAGTACT
CGATTCATCGGATTCGGAGATGCGAAAAAAGCAAAACATTTTGCAGATAT
GTTATGGAAGTTGTTTCTAGGAGGTACTAAGGAAGCAGAAAATGAACTGT
TACCAAGAACATTTGGCTGATGAGGTTGCTATACAATAAATTTGGTGGAG
TTATATTCAACGACGCGAGTTGGGATTATGAGAACAAGAAGGACGGCGTG
ATGTACAGTAAATTCATATCTCAAGTTCTAGACGGTGGGTCAGACGATCA
AGACGACGAAGAGGAAAAGAAGCAGGAAGATGAGCCAGTAGTGACGAAGA
GGAAAGAAACAAATTCAGGACCGAGATTAATCAATGGAAGGCCGGTAGTC
AATACAGTCGGCTGTTTTGGATGGAATCAACATTGAAGTTTTATTTGGCG
ATCCTTTATATTTCGTTGATTTCGTACGCGAATTAAGGCGTGTGATGGAT
TCAAGTGTCAATTCTCAGAAATTCTTAATCACAGCCAACCCAAGCTGCAT
TCACCCAAGTTACATCCTCAAAGATGCTTTCAAAGAAGCTATTGGAGCTT
TCGATCATCTATTCGTTAATTTTGATGACCAGAATTGTGATATCAACAAA
CCGGAGAAATTTGAGCCTGCATTCCAAGTGTGGTATGATTACGCAATCAA
AGAGAATGGACCGAACGTTTGGGTTGGACTAGCCTCTGATCCACGAAGAA
CAGCAAATGATTTCTTAAAACGCGAAGATGCAAAAAAGAAGTTACAGATG
GAACAAGATATTAAATACTGTCAATCAAAAGGTGTTAAAATCGTTCTCAG
TATTGGTGGCAGTACTCGATTCATCGGATTCGGAGATGCGAAAAAAGCAA
AACATTTTGCAGATATGTTATGGAAGTTGTTTCTAGGAGGTACTAAGGAA
GCAGAAAATGAACTGTTACCAAGAACATTTGGCTGATGAGGTTGCTATAC
AATAAATTTGGTGGAGTTATATTCAACGACGCGAGTTGGGATTATGAGAA
CAAGAAGGACGGCGTGATGTACAGTAAATTCATATCTCAAGTTCTAGACG
GTGGGTCAGACGATCAAGACGACGAAGAGGAAAAGAAGCAGGAAGATGAG
CCAGTAGTGACGAAGAGGAAAGAAACAAATTCAGGACCGAGATTAATCAA
TGGAAGGCCGGTAGTCAATACAGTCGGCTGTTTTGGATGGAATCAACATT
GAAGTTTTATTTGGCGATCCTTTATATTTCGTTGATTTCGTACGCGAATT
AAGGCGTGTGATGGATTCAAGTGTCAATTCTCAGAAATTCTTAATCACAG
CCAACCCAAGCTGCATTCACCCAAGTTACATCCTCAAAGATGCTTTCAAA
GAAGCTATTGGAGCTTTCGATCATCTATTCGTTAATTTTGATGACCAGAA
TTGTGATATCAACAAACCGGAGAAATTTGAGCCTGCATTCCAAGTGTGGT
ATGATTACGCAATCAAAGAGAATGGACCGAACGTTTGGGTTGGACTAGCC
TCTGATCCACGAAGAACAGCAAATGATTTCTTAAAACGCGAAGATGCAAA
AAAGAAGTTACAGATGGAACAAGATATTAAATACTGTCAATCAAAAGGTG
TTAAAATCGTTCTCAGTATTGGTGGCAGTACTCGATTCATCGGATTCGGA
GATGCGAAAAAAGCAAAACATTTTGCAGATATGTTATGGAAGTTGTTTCT
AGGAGGTACTAAGGAAGCAGAAAATGAACTGTTACCAAGAACATTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048560-exon-scaffold_143-1575043694:474648..474864 | TCONS_00048560-exon-scaffold_143-1575043694:474648..474864 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1575043694:473713..473980 | TCONS_00048560-exon-scaffold_143-1575043694:473713..473980 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1575043694:473104..473494 | TCONS_00048560-exon-scaffold_143-1575043694:473104..473494 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1575043694:471909..472150 | TCONS_00048560-exon-scaffold_143-1575043694:471909..472150 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1510915933:474648..474864 | TCONS_00048560-exon-scaffold_143-1510915933:474648..474864 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1510915933:473713..473980 | TCONS_00048560-exon-scaffold_143-1510915933:473713..473980 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1510915933:473104..473494 | TCONS_00048560-exon-scaffold_143-1510915933:473104..473494 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1510915933:471909..472150 | TCONS_00048560-exon-scaffold_143-1510915933:471909..472150 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1491911889:474648..474864 | TCONS_00048560-exon-scaffold_143-1491911889:474648..474864 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1491911889:473713..473980 | TCONS_00048560-exon-scaffold_143-1491911889:473713..473980 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1491911889:473104..473494 | TCONS_00048560-exon-scaffold_143-1491911889:473104..473494 | Clytia hemisphaerica | exon |
| TCONS_00048560-exon-scaffold_143-1491911889:471909..472150 | TCONS_00048560-exon-scaffold_143-1491911889:471909..472150 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:471909..474864 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001223 | Glyco_hydro18_cat |
| IPR017853 | Glycoside_hydrolase_SF |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0005975 |
carbohydrate metabolic process |
Blast
The following BLAST results are available for this feature:
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