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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048555 ID=TCONS_00048555|Name=TCONS_00048555|organism=Clytia hemisphaerica|type=transcript|length=6679bp
ACCGGGATTGTTCAGGAAAGCATCGAATAGTGACATTGGTTTGATTTGCA
TTACCATTGAGTTTTACCGTATTGAAATTGAACTTGAACATTATTGACAT
TGATTATTACGTATGGAATTGTGCATTTAAAATGGATGTGGTTATTACTG
ACATTTGACGTTGAATTATTATGAATGAAATTGTGTATTTAATAGTGGAT
GTGGTTATTATTGACATTTCATATGAAAGTTGATTAAAGTGGTGTCAATT
TTAGCAAACGCTAGAAATACATTCAAAAGACGTACACAAATTCATGCTGA
AGGAGAGGGACGAAGTTTTGGTTGAATTGTTTAAGACCGAACTGTTTGTT
TGATCACTTGAATGGCTTGCAAGAAGCTGGAAAGCCTGTTTAATGTTTGC
ACGGATGAACAAACATGttgaaacttttcaagaaaaattcgCTTGATCAA
ACATAGTTGGATTTTGTTGATTGATGTTTGTTTTGGTTGAACGAATAACT
ATTATTAACTATAGAATCTTCCCTCTGGTTCAGGAGTTTTTGATAATAGC
TTGAGGTCATCAAAAGAGTTTGTGAAAGGTGGACTGTTAGATCATCTGCA
TTTGATCGTTCAGCTGCTTAAACTTATAACGAAAAAATGGAAATCAGAGT
TCATTCTGAAATCAAGAAAGTTCGCCATACAAGCTCGAAAGAAAAGCATC
GTTTTAGACGAGAAGACCAACGTCAGAAGTACCACCATCAAAGGTACCAC
CGGCATCAAGAGTGCCAAAATTACAAAGAGGAGTTGCATCTGGAGCGGAG
AAGCAGATACCCACCTGCAAAGGATAGAAAGCCGAAGCCGGCCCCACGCT
CCACACAACCACCAACTCGACAGCAACATCAACCACCACTACCACCACCA
CCAACAACAACACCAATACCAACACCAACACCACGACCacaaccaccacc
accaccaccacctccTCCTCCACCTCCACAAACCTCTGGATCAAGTTTGC
GCCAAAAGCTGAACCAGGTACAAGACTCCACTGGTCAGGGAAATACCAGA
CGGGTGATCCTTTCAATTGAGGCAGTGACTCTGAAGAAACTGTTGGGGCA
CGTGTTGAGGGAGGTAAAAGAATTGCCCCAGGAGGAAAAGAAGTTAAGGC
TGAAGAAGGAGATCACGAAGCAAGAGAGGGAGCTCCGGACAACGGAAAGG
AAAATCCGAAGACTCAAGTGCTTGGAGAGGAAGCAAAAGGATCTTCTTGG
TGAACTACAAGCTGTTTCTGGATCCTTGGATTTGAAGGAATACCGAAATC
TACACATTGGAATTTGATCGGGCTGAGGAACTGTATGTATTCCTTCGACG
AAGACCCACCCGCTTTGCCTCCGAGGCAGACCACTCTACAGACTGACGAT
GGTGGAGACCCTTTTTCGACCACCTATGTGATACCCACTGATGGTAGCTC
CGAAACAGATCGGCAGATCACTGAGCTAGCAAGAGTTCGTCACTCGACCC
CACAAGCAACCCAAGGGGCACGAGTGACGTTTGCCGATGAAACAGATGAT
CATGCTTCAAGCAGCCCAAGAAATGGTTCGTCCAGGATGCCTTCAGGAGT
TAATACGTGGGAGACAACCTTGTCAGAATCCATCGCAAAGATAAGTCGTC
CCCAAGTCCATTACCAAGACTTACCCGTTTTCGATGGATCTGGGAGCAAG
TCTTACAAAACTTTTATTCGAGAGTTCGAAGAGATGGCTCGCTTGGGGTT
TTGGACAGAGGAGGAGAAACTGGCAGCCTTCCCGGCCAGGTTGGACAAAC
GGCCAAAGCTATACTATCATCGCCTCACCAAAGAATTAAAGAAAACCTAC
AATGCCGCTAAGGAAGCAGTCAAGGAGATGTTTGGCAATGCCGAAGATGA
GAGCCTGCTTCGAAGAGAACTGCACACAATCAAGCAAGGAGCTACCCCTT
TGCTTGAATACCTCCACAGGTTGGAAGAGCTATTCACAGAGTTGGACGTC
CATCCTAACGCGCAATTGGATTACCTCACTGCTGGCCTCCGACCTGATCT
GCAAGACTACGTTTACCTCCGGCAGTTCAAGAAGTATCATGAAGCTGTCA
AGGCGTTGAAGCTGAAAGAGTCCATCCGACGAGAGAAGCCCTTGGATGAA
CGATACAGGGTGATCCAGTCTGAACTGACGGAGATTAAAGAGCAGTTACA
GCAGTCAAGGAGACAGCCAGCGGTTACGAACCAACAAGCTGATATTGCAG
CCCTTTTAAGGGAGAACAACCGCCTCAAGGCTGAATTAAACATGACAAAT
GCCAGACGACCAAGAGAAGGCTGCTGGACATGTGGCGGGAGCGGACATAT
GGCAAATGCATGCCCCAAGAAGACTCCCCCAACTTGTTGGCAGTGCGGTG
TTCCAGGACACACTGCGAGGCAGTGCCGAAATCGACCATCCGAAGTCAAG
GTGGTCGAGAAGAGCCAGCATGCTGGACCGACGGTGAAGGTGATGGTCAA
AGGAAAGATGGTCAGTGCCTTGTGCGATTCAGGCGCCCAAGTCAGCATTG
TGAGTGGGCTGTTAGCAAAGCAGTTGAGACTGAAGGTTGTCGGGAAAAGC
CAGAATGCAAGGGGAATTAGTGGCACATCCGTCAAATCCTTGGGAGAAGT
TGAACTTGACACAGTGATCGACGGCGAGAAGTTCAACGGAAAGTTCATGG
TGTTGGAGGAAAGCAGCATTCAAATGATCATTGGTGAAGATTTCCTCTCC
CGACACAGAGCAATCCTCAACCTAGGGGAAAGGTGCCTTGTGCTTCACAA
GGGCCAACGAAGAATTGAGGTTGGACTTCAGCGTGAAACAACTTCCCAAG
CCGTTGCTGAACGCCGCCTGTACTTACCTCCTCAAGCCAGCACAGCGTGG
AGTTTCCCCGCGAAGCAAATCAGGGAGATCGAGGCGTTACCTTATGCACC
AATCGATGTCAGAGTGTTGACGAAGTCCTCAGAGGGTGTACGGTTGATTA
TTTCTAACCGGACAGAGGACGCAGTTGAACTGAAACCTGGTGACGTGATC
GGCAAATGGGTGCATCATGACGCCGAAATTGAGGATCCGAAAAGTGGTGT
TGCAGATGACACGCACGAAATGCAGGACATTGATGGTGGACAGAAAGGAA
AGCTAGAAGCCTTGATCGAAAGAAACAAAGACGTCTTCGCTGATTCGGAC
CTGAAGCTTGGTGCTACCCACTTAATGGAATATGACATCGATACAGGGGA
TGCTGAGCCGATCAAGCAAAGCGCCTATTCGACCACTCCGGCGAAGCGCG
CAGAGATCGACAAGCAAATCAAGGAGCTGGAAGAGCAAGGAATTATCCGA
AGAAGCCAGTCAAGTTGGAGCTCGCCCGTTTTGCTAGTTCCCAAAGCCTG
TGGGGCTATGCGCATGTGCATTGATTATCGTAGGCTCAATGCTGTGACAA
AGAAAGATGCATACCCTATTCCAAGGGTGAATGATGTGCTTGATCAGCTT
GGCGGAGCCAAGTACTTCTCGACGTGCGACTTGCAGAGTGGATTCCACCA
AGTACCCCTGACAGCAAGAAGCATTCCGAAGACGGCTTTTGTAACCCATC
GTGGGTTATTTGAGTACGTCCGGCTCCCTTTTGGCCCGTCGAATGGCCCC
AGTAAATTTGAAAGATTATTGGAGGACATATTTAGGAACGAGCTCTGGGA
CTTCGTCTCCATCTTTATAGATGACATTATCATTCATAGCAAAACCTTCG
AAGAGCACCTCGAACACATCCAAATTGTATTTCAACGATTGCGGGAAGCC
GGATTGAAGATGAAACGGAAGAAATGCCATTTTTGCGTCCCAACTCTAAA
TTTTTTGGGCCATGAAGTGAGTGCTGAAGGCATCAAACCCAAAGTAGATA
ATGTGAGAAAGCTGTTGGATGCCAAGAAGCCGACAACGACCAAGCAGGTT
CAAGCCTTCCTTGGACTTACTGGTTATTACCGAAGGTTTGTTCCAGGGTA
TTCAGAGATAGCTAGGCCGCTCTACAAGTGCGTTCCAAAGTTTCAGTGGG
GAGAAGAGCAGAACAAAGCATGGACAACTCTGATTGAAAAACTGACGAAT
CCGCCGTTACTGGAATTCCCAAATTTCAACAAGGAATTCGTGCTCAACAC
GGACGCTTCAGGGTTGGCGATTGGATATGTTTTATCTCAAACCTCGGATG
GAGAAAAACCCCTACCAATCAGGTATGGGGGAAGGGTCTTGAAAGACGCT
GAAATCCGATACACGATTACTGAGAAAGAGCTGCTTAGTTTGGTGTATGC
AATAAGAGATTGCACCCAATACCTTGAAGGCCGATTCTTTACCGTGTACA
CGGATCACCAACCACTGACGCATGCCCTCCGGTTCCGTGACGTTTCAGGA
AGGTTGTCCCGGTGGGCTGTTTTGCTCCAGCAGTATACCTTTGAAATCCG
CTACAAGAAGGGGGCAAAGCATAGTGATGCCGACGCAATGTCCCGTGCTC
CTATCCAACCTGTTTCTGAGGCATTTGTGGGAAGCATTCGTCTTGTGCCC
ACGACGGAAGTAGCTGCAGAGCAAGAGTGTGACCGACAGGTGATGAGTCA
TATCGAGAGGAATCGCGACGAGTACGCCCAAGATGAATCTGGTGTTTGGA
CACATCTGACAAAGAGAGGAAAGAGTGTGGTACACTCTCTCGTGGTACCC
CAGAGGTTCAGGGCTGATATCCTCGATTCCATCCATAAACATCCCAGCGG
AGCGCATTTTGGTATAAGCAAGACGGTGAACAAGGTCTGGCAAACATACT
TTTGGCCTGGCTTGTACCAGGATGTCGTGTGTTACATTGAAAAGTGTGAG
GGATGCCGCCAACACAAAGGGAGATCATTGAAAGCATCTCTGCAAAGCAT
TCCATGTACCCGCCCTTGGGCCGACTTGACGGTCGATATACTTGGTCCAT
TTCATATGACGTTGAGTGGTAACAAATACATCCTCACCTTTGTGGACCGA
TTCACTGCTTGGCCTGAAGCTTTCGCGATACCTTCGTGCGAATCACCTGT
CCTTGCCCAGATCCTGGTCGATGAAATTATTTCAAGACACGGTGTGCCGA
CGACGCTACTATCGGACAATGGAAGGAACTTCGTATCAAACTTAATGAAA
GAGGTTTGTAAGATCCTTGGGATCACGAAGATTACCACAACACCCTATCA
CTGCAGGACCAATGGAATTTGCGAGCGATTCCATCGCTCAGTTGCCCGAA
GCCTCGCACAATATACCGATAAACAACAGGAAGATTGGGACAAATATTTG
CCAATGATCTTGTTCGCCTATCGGACGTCGGTGAATGAATCTAGGAACTT
TTCGCCATTTTTGCTGAATTATGGTTACGAGGCTACACTTCCAATCAATA
CAGAATTTAATCGAGATGACCCAGATTATTTGAACCTACCCGCCTACGCA
GGTTGGCTAAAAGAAACCTTAAGTGAATTCTGGCAAGCGTCAAAGGAAAA
CCTTGAGAAGTCACAGCTGGCGGATCACCAACGGAACGTCCAATACGAGT
CGCCATATGATGTTGGGGACAATGTGTTCGTGCGAAAGCAAAAGCGCACG
AAAGGAAAGTCATTTAAGCTCGAAAAGATTTGGTTGGGACCTTTCATCAT
CAAGAAAGCGAAACACCCGATCTACCAGCTTGCCATGAAAGGAAGACCGA
AGTGGATACATTACGATCGTTTAAAGAGGCACAGCCCGACAACGGAAGTC
GAGGTAGGAGCCCCTAATTCAGAAGCACAGAATGAAGTCCTGAGGCAAGG
TGAATCGGAGAAGGAAATTACTCAAAGAGTTCAAGAAACTATGCATGAGA
GCGTAGTTGAAGGTCAACAAGATGAAACCCGATTACCAGAAGGGCAATAC
CAGGTCGAAAGCGTTGTCAGTCATAAGAAGAGCGGACGAACTGTTAAGTA
CAGAATACGCTGGAGTGGCTATGGTCCAgaagatgacacttccagttgAA
TCGATGGTCTCAGACACTGCTGCCTTATTGATGGCCATTTGGTTTTTAAT
GTCTCTGTTCGGTGTGGCGAGTGCAACAAACGATACAGGTCGAACACGGT
CTATGGGGAAACTCGGAGTGGTTGAAACAAACAAAACCAATCATACTATT
ATTGGACAACCTACCAACATCACGCTGAAGATTTTTGACTGCAGGAACCC
CAAACCGCTCGGAATTTACAAGACAAGGTCCATGAAAAGTTGCAAAGTCC
AGGAAGACAAGGCGGCTAAGATGGTCGTTAGAAAGGTGAAAGTGTTCAAA
TATGACCCCGCGACCACGAAATTTCCTTTGTACGTATGCCGACATCAAGT
TTTGAGGAAGGATTGCCCATATAGCACACAGAGTTATTTTCGTGGGATCA
CGGAGGAGTCCTGTGACCGATGGATCAGACAGACCTTGTTTCATGATTTT
AGGAGCCCAGACCCAACCCTCAAGATCTATGAAGGCTACCGTTATGTAGG
TCAGGAAGAGTTTCACGAAATTGAGGGAACCTATTTGACCAAAGAACCTC
GACCATTTCGATGTCCGTATCCCAAGGCACAGTACAGACGAAGGTACCAA
TTCGAAGTCCATTCTGCCCAGGTTACTGGAAGAGGAAATTTAACCACCAA
CTATGGTCCAACGAACTGTGAAAGTTTTG Run BLAST on NCBI protein sequence of TCONS_00048555-protein >TCONS_00048555-protein ID=TCONS_00048555-protein|Name=TCONS_00048555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1554bp
MYSFDEDPPALPPRQTTLQTDDGGDPFSTTYVIPTDGSSETDRQITELAR
VRHSTPQATQGARVTFADETDDHASSSPRNGSSRMPSGVNTWETTLSESI
AKISRPQVHYQDLPVFDGSGSKSYKTFIREFEEMARLGFWTEEEKLAAFP
ARLDKRPKLYYHRLTKELKKTYNAAKEAVKEMFGNAEDESLLRRELHTIK
QGATPLLEYLHRLEELFTELDVHPNAQLDYLTAGLRPDLQDYVYLRQFKK
YHEAVKALKLKESIRREKPLDERYRVIQSELTEIKEQLQQSRRQPAVTNQ
QADIAALLRENNRLKAELNMTNARRPREGCWTCGGSGHMANACPKKTPPT
CWQCGVPGHTARQCRNRPSEVKVVEKSQHAGPTVKVMVKGKMVSALCDSG
AQVSIVSGLLAKQLRLKVVGKSQNARGISGTSVKSLGEVELDTVIDGEKF
NGKFMVLEESSIQMIIGEDFLSRHRAILNLGERCLVLHKGQRRIEVGLQR
ETTSQAVAERRLYLPPQASTAWSFPAKQIREIEALPYAPIDVRVLTKSSE
GVRLIISNRTEDAVELKPGDVIGKWVHHDAEIEDPKSGVADDTHEMQDID
GGQKGKLEALIERNKDVFADSDLKLGATHLMEYDIDTGDAEPIKQSAYST
TPAKRAEIDKQIKELEEQGIIRRSQSSWSSPVLLVPKACGAMRMCIDYRR
LNAVTKKDAYPIPRVNDVLDQLGGAKYFSTCDLQSGFHQVPLTARSIPKT
AFVTHRGLFEYVRLPFGPSNGPSKFERLLEDIFRNELWDFVSIFIDDIII
HSKTFEEHLEHIQIVFQRLREAGLKMKRKKCHFCVPTLNFLGHEVSAEGI
KPKVDNVRKLLDAKKPTTTKQVQAFLGLTGYYRRFVPGYSEIARPLYKCV
PKFQWGEEQNKAWTTLIEKLTNPPLLEFPNFNKEFVLNTDASGLAIGYVL
SQTSDGEKPLPIRYGGRVLKDAEIRYTITEKELLSLVYAIRDCTQYLEGR
FFTVYTDHQPLTHALRFRDVSGRLSRWAVLLQQYTFEIRYKKGAKHSDAD
AMSRAPIQPVSEAFVGSIRLVPTTEVAAEQECDRQVMSHIERNRDEYAQD
ESGVWTHLTKRGKSVVHSLVVPQRFRADILDSIHKHPSGAHFGISKTVNK
VWQTYFWPGLYQDVVCYIEKCEGCRQHKGRSLKASLQSIPCTRPWADLTV
DILGPFHMTLSGNKYILTFVDRFTAWPEAFAIPSCESPVLAQILVDEIIS
RHGVPTTLLSDNGRNFVSNLMKEVCKILGITKITTTPYHCRTNGICERFH
RSVARSLAQYTDKQQEDWDKYLPMILFAYRTSVNESRNFSPFLLNYGYEA
TLPINTEFNRDDPDYLNLPAYAGWLKETLSEFWQASKENLEKSQLADHQR
NVQYESPYDVGDNVFVRKQKRTKGKSFKLEKIWLGPFIIKKAKHPIYQLA
MKGRPKWIHYDRLKRHSPTTEVEVGAPNSEAQNEVLRQGESEKEITQRVQ
ETMHESVVEGQQDETRLPEGQYQVESVVSHKKSGRTVKYRIRWSGYGPED
DTSS Run BLAST on NCBI transcript from alignment at scaffold_143:382453..389274- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048555 ID=TCONS_00048555|Name=TCONS_00048555|organism=Clytia hemisphaerica|type=transcript|length=6822bp|location=Sequence derived from alignment at scaffold_143:382453..389274- (Clytia hemisphaerica)
ACCGGGATTGTTCAGGAAAGCATCGAATAGTGACATTGGTTTGATTTGCA
TTACCATTGAGTTTTACCGTATTGAAATTGAACTTGAACATTATTGACAT
TGATTATTACGTATGGAATTGTGCATTTAAAATGGATGTGGTTATTACTG
ACATTTGACGTTGAATTATTATGAATGAAATTGTGTATTTAATAGTGGAT
GTGGTTATTATTGACATTTCATATGAAAGTTGATTAAAGTGGTGTCAATT
TTAGCAAACGCTAGAAATACATTCAAAAGACGTACACAAATTCATGCTGA
AGGAGAGGGACGAAGTTTTGGTTGAATTGTTTAAGACCGAACTGTTTGTT
TGATCACTTGAATGGCTTGCAAGAAGCTGGAAAGCCTGTTTAATGTTTGC
ACGGATGAACAAACATGTTGAAACTTTTCAAGAAAAATTCGCTTGATCAA
ACATAGTTGGATTTTGTTGATTGATGTTTGTTTTGGTTGAACGAATAACT
ATTATTAACTATAGAATCTTCCCTCTGGTTCAGGAGTTTTTGATAATAGC
TTGAGGTCATCAAAAGAGTTTGTGAAAGGTGGACTGTTAGATCATCTGCA
TTTGATCGTTCAGCTGCTTAAACTTATAACGAAAAAATGGAAATCAGAGT
TCATTCTGAAATCAAGAAAGTTCGCCATACAAGCTCGAAAGAAAAGCATC
GTTTTAGACGAGAAGACCAACGTCAGAAGTACCACCATCAAAGGTACCAC
CGGCATCAAGAGTGCCAAAATTACAAAGAGGAGTTGCATCTGGAGCGGAG
AAGCAGATACCCACCTGCAAAGGATAGAAAGCCGAAGCCGGCCCCACGCT
CCACACAACCACCAACTCGACAGCAACATCAACCACCACTACCACCACCA
CCAACAACAACACCAATACCAACACCAACACCACGACCACAACCACCACC
ACCACCACCACCTCCTCCTCCACCTCCACAAACCTCTGGATCAAGTTTGC
GCCAAAAGCTGAACCAGGTACAAGACTCCACTGGTCAGGGAAATACCAGA
CGGGTGATCCTTTCAATTGAGGCAGTGACTCTGAAGAAACTGTTGGGGCA
CGTGTTGAGGGAGGTAAAAGAATTGCCCCAGGAGGAAAAGAAGTTAAGGC
TGAAGAAGGAGATCACGAAGCAAGAGAGGGAGCTCCGGACAACGGAAAGG
AAAATCCGAAGACTCAAGTGCTTGGAGAGGAAGCAAAAGGATCTTCTTGG
TGAACTACAAGCTGTTTCTGGATCCTTGGATTTGAAGGAATACCGAAATC
TACACATTGGAATTTGATCGTAAGTCCTTCCTATTAGCTTATGCTCAGTT
GTCAACGTTTAGCTAACTTGTACTTGTTTCGAGTACTTATTTAGCGTTTT
GTTGATTACCTACGGACTTGAGGTACCTTCCTTTAAAGGAGTTTACTCAT
TTAACCTTGTAGGGGCTGAGGAACTGTATGTATTCCTTCGACGAAGACCC
ACCCGCTTTGCCTCCGAGGCAGACCACTCTACAGACTGACGATGGTGGAG
ACCCTTTTTCGACCACCTATGTGATACCCACTGATGGTAGCTCCGAAACA
GATCGGCAGATCACTGAGCTAGCAAGAGTTCGTCACTCGACCCCACAAGC
AACCCAAGGGGCACGAGTGACGTTTGCCGATGAAACAGATGATCATGCTT
CAAGCAGCCCAAGAAATGGTTCGTCCAGGATGCCTTCAGGAGTTAATACG
TGGGAGACAACCTTGTCAGAATCCATCGCAAAGATAAGTCGTCCCCAAGT
CCATTACCAAGACTTACCCGTTTTCGATGGATCTGGGAGCAAGTCTTACA
AAACTTTTATTCGAGAGTTCGAAGAGATGGCTCGCTTGGGGTTTTGGACA
GAGGAGGAGAAACTGGCAGCCTTCCCGGCCAGGTTGGACAAACGGCCAAA
GCTATACTATCATCGCCTCACCAAAGAATTAAAGAAAACCTACAATGCCG
CTAAGGAAGCAGTCAAGGAGATGTTTGGCAATGCCGAAGATGAGAGCCTG
CTTCGAAGAGAACTGCACACAATCAAGCAAGGAGCTACCCCTTTGCTTGA
ATACCTCCACAGGTTGGAAGAGCTATTCACAGAGTTGGACGTCCATCCTA
ACGCGCAATTGGATTACCTCACTGCTGGCCTCCGACCTGATCTGCAAGAC
TACGTTTACCTCCGGCAGTTCAAGAAGTATCATGAAGCTGTCAAGGCGTT
GAAGCTGAAAGAGTCCATCCGACGAGAGAAGCCCTTGGATGAACGATACA
GGGTGATCCAGTCTGAACTGACGGAGATTAAAGAGCAGTTACAGCAGTCA
AGGAGACAGCCAGCGGTTACGAACCAACAAGCTGATATTGCAGCCCTTTT
AAGGGAGAACAACCGCCTCAAGGCTGAATTAAACATGACAAATGCCAGAC
GACCAAGAGAAGGCTGCTGGACATGTGGCGGGAGCGGACATATGGCAAAT
GCATGCCCCAAGAAGACTCCCCCAACTTGTTGGCAGTGCGGTGTTCCAGG
ACACACTGCGAGGCAGTGCCGAAATCGACCATCCGAAGTCAAGGTGGTCG
AGAAGAGCCAGCATGCTGGACCGACGGTGAAGGTGATGGTCAAAGGAAAG
ATGGTCAGTGCCTTGTGCGATTCAGGCGCCCAAGTCAGCATTGTGAGTGG
GCTGTTAGCAAAGCAGTTGAGACTGAAGGTTGTCGGGAAAAGCCAGAATG
CAAGGGGAATTAGTGGCACATCCGTCAAATCCTTGGGAGAAGTTGAACTT
GACACAGTGATCGACGGCGAGAAGTTCAACGGAAAGTTCATGGTGTTGGA
GGAAAGCAGCATTCAAATGATCATTGGTGAAGATTTCCTCTCCCGACACA
GAGCAATCCTCAACCTAGGGGAAAGGTGCCTTGTGCTTCACAAGGGCCAA
CGAAGAATTGAGGTTGGACTTCAGCGTGAAACAACTTCCCAAGCCGTTGC
TGAACGCCGCCTGTACTTACCTCCTCAAGCCAGCACAGCGTGGAGTTTCC
CCGCGAAGCAAATCAGGGAGATCGAGGCGTTACCTTATGCACCAATCGAT
GTCAGAGTGTTGACGAAGTCCTCAGAGGGTGTACGGTTGATTATTTCTAA
CCGGACAGAGGACGCAGTTGAACTGAAACCTGGTGACGTGATCGGCAAAT
GGGTGCATCATGACGCCGAAATTGAGGATCCGAAAAGTGGTGTTGCAGAT
GACACGCACGAAATGCAGGACATTGATGGTGGACAGAAAGGAAAGCTAGA
AGCCTTGATCGAAAGAAACAAAGACGTCTTCGCTGATTCGGACCTGAAGC
TTGGTGCTACCCACTTAATGGAATATGACATCGATACAGGGGATGCTGAG
CCGATCAAGCAAAGCGCCTATTCGACCACTCCGGCGAAGCGCGCAGAGAT
CGACAAGCAAATCAAGGAGCTGGAAGAGCAAGGAATTATCCGAAGAAGCC
AGTCAAGTTGGAGCTCGCCCGTTTTGCTAGTTCCCAAAGCCTGTGGGGCT
ATGCGCATGTGCATTGATTATCGTAGGCTCAATGCTGTGACAAAGAAAGA
TGCATACCCTATTCCAAGGGTGAATGATGTGCTTGATCAGCTTGGCGGAG
CCAAGTACTTCTCGACGTGCGACTTGCAGAGTGGATTCCACCAAGTACCC
CTGACAGCAAGAAGCATTCCGAAGACGGCTTTTGTAACCCATCGTGGGTT
ATTTGAGTACGTCCGGCTCCCTTTTGGCCCGTCGAATGGCCCCAGTAAAT
TTGAAAGATTATTGGAGGACATATTTAGGAACGAGCTCTGGGACTTCGTC
TCCATCTTTATAGATGACATTATCATTCATAGCAAAACCTTCGAAGAGCA
CCTCGAACACATCCAAATTGTATTTCAACGATTGCGGGAAGCCGGATTGA
AGATGAAACGGAAGAAATGCCATTTTTGCGTCCCAACTCTAAATTTTTTG
GGCCATGAAGTGAGTGCTGAAGGCATCAAACCCAAAGTAGATAATGTGAG
AAAGCTGTTGGATGCCAAGAAGCCGACAACGACCAAGCAGGTTCAAGCCT
TCCTTGGACTTACTGGTTATTACCGAAGGTTTGTTCCAGGGTATTCAGAG
ATAGCTAGGCCGCTCTACAAGTGCGTTCCAAAGTTTCAGTGGGGAGAAGA
GCAGAACAAAGCATGGACAACTCTGATTGAAAAACTGACGAATCCGCCGT
TACTGGAATTCCCAAATTTCAACAAGGAATTCGTGCTCAACACGGACGCT
TCAGGGTTGGCGATTGGATATGTTTTATCTCAAACCTCGGATGGAGAAAA
ACCCCTACCAATCAGGTATGGGGGAAGGGTCTTGAAAGACGCTGAAATCC
GATACACGATTACTGAGAAAGAGCTGCTTAGTTTGGTGTATGCAATAAGA
GATTGCACCCAATACCTTGAAGGCCGATTCTTTACCGTGTACACGGATCA
CCAACCACTGACGCATGCCCTCCGGTTCCGTGACGTTTCAGGAAGGTTGT
CCCGGTGGGCTGTTTTGCTCCAGCAGTATACCTTTGAAATCCGCTACAAG
AAGGGGGCAAAGCATAGTGATGCCGACGCAATGTCCCGTGCTCCTATCCA
ACCTGTTTCTGAGGCATTTGTGGGAAGCATTCGTCTTGTGCCCACGACGG
AAGTAGCTGCAGAGCAAGAGTGTGACCGACAGGTGATGAGTCATATCGAG
AGGAATCGCGACGAGTACGCCCAAGATGAATCTGGTGTTTGGACACATCT
GACAAAGAGAGGAAAGAGTGTGGTACACTCTCTCGTGGTACCCCAGAGGT
TCAGGGCTGATATCCTCGATTCCATCCATAAACATCCCAGCGGAGCGCAT
TTTGGTATAAGCAAGACGGTGAACAAGGTCTGGCAAACATACTTTTGGCC
TGGCTTGTACCAGGATGTCGTGTGTTACATTGAAAAGTGTGAGGGATGCC
GCCAACACAAAGGGAGATCATTGAAAGCATCTCTGCAAAGCATTCCATGT
ACCCGCCCTTGGGCCGACTTGACGGTCGATATACTTGGTCCATTTCATAT
GACGTTGAGTGGTAACAAATACATCCTCACCTTTGTGGACCGATTCACTG
CTTGGCCTGAAGCTTTCGCGATACCTTCGTGCGAATCACCTGTCCTTGCC
CAGATCCTGGTCGATGAAATTATTTCAAGACACGGTGTGCCGACGACGCT
ACTATCGGACAATGGAAGGAACTTCGTATCAAACTTAATGAAAGAGGTTT
GTAAGATCCTTGGGATCACGAAGATTACCACAACACCCTATCACTGCAGG
ACCAATGGAATTTGCGAGCGATTCCATCGCTCAGTTGCCCGAAGCCTCGC
ACAATATACCGATAAACAACAGGAAGATTGGGACAAATATTTGCCAATGA
TCTTGTTCGCCTATCGGACGTCGGTGAATGAATCTAGGAACTTTTCGCCA
TTTTTGCTGAATTATGGTTACGAGGCTACACTTCCAATCAATACAGAATT
TAATCGAGATGACCCAGATTATTTGAACCTACCCGCCTACGCAGGTTGGC
TAAAAGAAACCTTAAGTGAATTCTGGCAAGCGTCAAAGGAAAACCTTGAG
AAGTCACAGCTGGCGGATCACCAACGGAACGTCCAATACGAGTCGCCATA
TGATGTTGGGGACAATGTGTTCGTGCGAAAGCAAAAGCGCACGAAAGGAA
AGTCATTTAAGCTCGAAAAGATTTGGTTGGGACCTTTCATCATCAAGAAA
GCGAAACACCCGATCTACCAGCTTGCCATGAAAGGAAGACCGAAGTGGAT
ACATTACGATCGTTTAAAGAGGCACAGCCCGACAACGGAAGTCGAGGTAG
GAGCCCCTAATTCAGAAGCACAGAATGAAGTCCTGAGGCAAGGTGAATCG
GAGAAGGAAATTACTCAAAGAGTTCAAGAAACTATGCATGAGAGCGTAGT
TGAAGGTCAACAAGATGAAACCCGATTACCAGAAGGGCAATACCAGGTCG
AAAGCGTTGTCAGTCATAAGAAGAGCGGACGAACTGTTAAGTACAGAATA
CGCTGGAGTGGCTATGGTCCAGAAGATGACACTTCCAGTTGAATCGATGG
TCTCAGACACTGCTGCCTTATTGATGGCCATTTGGTTTTTAATGTCTCTG
TTCGGTGTGGCGAGTGCAACAAACGATACAGGTCGAACACGGTCTATGGG
GAAACTCGGAGTGGTTGAAACAAACAAAACCAATCATACTATTATTGGAC
AACCTACCAACATCACGCTGAAGATTTTTGACTGCAGGAACCCCAAACCG
CTCGGAATTTACAAGACAAGGTCCATGAAAAGTTGCAAAGTCCAGGAAGA
CAAGGCGGCTAAGATGGTCGTTAGAAAGGTGAAAGTGTTCAAATATGACC
CCGCGACCACGAAATTTCCTTTGTACGTATGCCGACATCAAGTTTTGAGG
AAGGATTGCCCATATAGCACACAGAGTTATTTTCGTGGGATCACGGAGGA
GTCCTGTGACCGATGGATCAGACAGACCTTGTTTCATGATTTTAGGAGCC
CAGACCCAACCCTCAAGATCTATGAAGGCTACCGTTATGTAGGTCAGGAA
GAGTTTCACGAAATTGAGGGAACCTATTTGACCAAAGAACCTCGACCATT
TCGATGTCCGTATCCCAAGGCACAGTACAGACGAAGGTACCAATTCGAAG
TCCATTCTGCCCAGGTTACTGGAAGAGGAAATTTAACCACCAACTATGGT
CCAACGAACTGTGAAAGTTTTG Coding sequence (CDS) from alignment at scaffold_143:382453..389274- >TCONS_00048555 ID=TCONS_00048555|Name=TCONS_00048555|organism=Clytia hemisphaerica|type=CDS|length=4665bp|location=Sequence derived from alignment at scaffold_143:382453..389274- (Clytia hemisphaerica)
ATGTATTCCTTCGACGAAGACCCACCCGCTTTGCCTCCGAGGCAGACCAC
TCTACAGACTGACGATGGTGGAGACCCTTTTTCGACCACCTATGTGATAC
CCACTGATGGTAGCTCCGAAACAGATCGGCAGATCACTGAGCTAGCAAGA
GTTCGTCACTCGACCCCACAAGCAACCCAAGGGGCACGAGTGACGTTTGC
CGATGAAACAGATGATCATGCTTCAAGCAGCCCAAGAAATGGTTCGTCCA
GGATGCCTTCAGGAGTTAATACGTGGGAGACAACCTTGTCAGAATCCATC
GCAAAGATAAGTCGTCCCCAAGTCCATTACCAAGACTTACCCGTTTTCGA
TGGATCTGGGAGCAAGTCTTACAAAACTTTTATTCGAGAGTTCGAAGAGA
TGGCTCGCTTGGGGTTTTGGACAGAGGAGGAGAAACTGGCAGCCTTCCCG
GCCAGGTTGGACAAACGGCCAAAGCTATACTATCATCGCCTCACCAAAGA
ATTAAAGAAAACCTACAATGCCGCTAAGGAAGCAGTCAAGGAGATGTTTG
GCAATGCCGAAGATGAGAGCCTGCTTCGAAGAGAACTGCACACAATCAAG
CAAGGAGCTACCCCTTTGCTTGAATACCTCCACAGGTTGGAAGAGCTATT
CACAGAGTTGGACGTCCATCCTAACGCGCAATTGGATTACCTCACTGCTG
GCCTCCGACCTGATCTGCAAGACTACGTTTACCTCCGGCAGTTCAAGAAG
TATCATGAAGCTGTCAAGGCGTTGAAGCTGAAAGAGTCCATCCGACGAGA
GAAGCCCTTGGATGAACGATACAGGGTGATCCAGTCTGAACTGACGGAGA
TTAAAGAGCAGTTACAGCAGTCAAGGAGACAGCCAGCGGTTACGAACCAA
CAAGCTGATATTGCAGCCCTTTTAAGGGAGAACAACCGCCTCAAGGCTGA
ATTAAACATGACAAATGCCAGACGACCAAGAGAAGGCTGCTGGACATGTG
GCGGGAGCGGACATATGGCAAATGCATGCCCCAAGAAGACTCCCCCAACT
TGTTGGCAGTGCGGTGTTCCAGGACACACTGCGAGGCAGTGCCGAAATCG
ACCATCCGAAGTCAAGGTGGTCGAGAAGAGCCAGCATGCTGGACCGACGG
TGAAGGTGATGGTCAAAGGAAAGATGGTCAGTGCCTTGTGCGATTCAGGC
GCCCAAGTCAGCATTGTGAGTGGGCTGTTAGCAAAGCAGTTGAGACTGAA
GGTTGTCGGGAAAAGCCAGAATGCAAGGGGAATTAGTGGCACATCCGTCA
AATCCTTGGGAGAAGTTGAACTTGACACAGTGATCGACGGCGAGAAGTTC
AACGGAAAGTTCATGGTGTTGGAGGAAAGCAGCATTCAAATGATCATTGG
TGAAGATTTCCTCTCCCGACACAGAGCAATCCTCAACCTAGGGGAAAGGT
GCCTTGTGCTTCACAAGGGCCAACGAAGAATTGAGGTTGGACTTCAGCGT
GAAACAACTTCCCAAGCCGTTGCTGAACGCCGCCTGTACTTACCTCCTCA
AGCCAGCACAGCGTGGAGTTTCCCCGCGAAGCAAATCAGGGAGATCGAGG
CGTTACCTTATGCACCAATCGATGTCAGAGTGTTGACGAAGTCCTCAGAG
GGTGTACGGTTGATTATTTCTAACCGGACAGAGGACGCAGTTGAACTGAA
ACCTGGTGACGTGATCGGCAAATGGGTGCATCATGACGCCGAAATTGAGG
ATCCGAAAAGTGGTGTTGCAGATGACACGCACGAAATGCAGGACATTGAT
GGTGGACAGAAAGGAAAGCTAGAAGCCTTGATCGAAAGAAACAAAGACGT
CTTCGCTGATTCGGACCTGAAGCTTGGTGCTACCCACTTAATGGAATATG
ACATCGATACAGGGGATGCTGAGCCGATCAAGCAAAGCGCCTATTCGACC
ACTCCGGCGAAGCGCGCAGAGATCGACAAGCAAATCAAGGAGCTGGAAGA
GCAAGGAATTATCCGAAGAAGCCAGTCAAGTTGGAGCTCGCCCGTTTTGC
TAGTTCCCAAAGCCTGTGGGGCTATGCGCATGTGCATTGATTATCGTAGG
CTCAATGCTGTGACAAAGAAAGATGCATACCCTATTCCAAGGGTGAATGA
TGTGCTTGATCAGCTTGGCGGAGCCAAGTACTTCTCGACGTGCGACTTGC
AGAGTGGATTCCACCAAGTACCCCTGACAGCAAGAAGCATTCCGAAGACG
GCTTTTGTAACCCATCGTGGGTTATTTGAGTACGTCCGGCTCCCTTTTGG
CCCGTCGAATGGCCCCAGTAAATTTGAAAGATTATTGGAGGACATATTTA
GGAACGAGCTCTGGGACTTCGTCTCCATCTTTATAGATGACATTATCATT
CATAGCAAAACCTTCGAAGAGCACCTCGAACACATCCAAATTGTATTTCA
ACGATTGCGGGAAGCCGGATTGAAGATGAAACGGAAGAAATGCCATTTTT
GCGTCCCAACTCTAAATTTTTTGGGCCATGAAGTGAGTGCTGAAGGCATC
AAACCCAAAGTAGATAATGTGAGAAAGCTGTTGGATGCCAAGAAGCCGAC
AACGACCAAGCAGGTTCAAGCCTTCCTTGGACTTACTGGTTATTACCGAA
GGTTTGTTCCAGGGTATTCAGAGATAGCTAGGCCGCTCTACAAGTGCGTT
CCAAAGTTTCAGTGGGGAGAAGAGCAGAACAAAGCATGGACAACTCTGAT
TGAAAAACTGACGAATCCGCCGTTACTGGAATTCCCAAATTTCAACAAGG
AATTCGTGCTCAACACGGACGCTTCAGGGTTGGCGATTGGATATGTTTTA
TCTCAAACCTCGGATGGAGAAAAACCCCTACCAATCAGGTATGGGGGAAG
GGTCTTGAAAGACGCTGAAATCCGATACACGATTACTGAGAAAGAGCTGC
TTAGTTTGGTGTATGCAATAAGAGATTGCACCCAATACCTTGAAGGCCGA
TTCTTTACCGTGTACACGGATCACCAACCACTGACGCATGCCCTCCGGTT
CCGTGACGTTTCAGGAAGGTTGTCCCGGTGGGCTGTTTTGCTCCAGCAGT
ATACCTTTGAAATCCGCTACAAGAAGGGGGCAAAGCATAGTGATGCCGAC
GCAATGTCCCGTGCTCCTATCCAACCTGTTTCTGAGGCATTTGTGGGAAG
CATTCGTCTTGTGCCCACGACGGAAGTAGCTGCAGAGCAAGAGTGTGACC
GACAGGTGATGAGTCATATCGAGAGGAATCGCGACGAGTACGCCCAAGAT
GAATCTGGTGTTTGGACACATCTGACAAAGAGAGGAAAGAGTGTGGTACA
CTCTCTCGTGGTACCCCAGAGGTTCAGGGCTGATATCCTCGATTCCATCC
ATAAACATCCCAGCGGAGCGCATTTTGGTATAAGCAAGACGGTGAACAAG
GTCTGGCAAACATACTTTTGGCCTGGCTTGTACCAGGATGTCGTGTGTTA
CATTGAAAAGTGTGAGGGATGCCGCCAACACAAAGGGAGATCATTGAAAG
CATCTCTGCAAAGCATTCCATGTACCCGCCCTTGGGCCGACTTGACGGTC
GATATACTTGGTCCATTTCATATGACGTTGAGTGGTAACAAATACATCCT
CACCTTTGTGGACCGATTCACTGCTTGGCCTGAAGCTTTCGCGATACCTT
CGTGCGAATCACCTGTCCTTGCCCAGATCCTGGTCGATGAAATTATTTCA
AGACACGGTGTGCCGACGACGCTACTATCGGACAATGGAAGGAACTTCGT
ATCAAACTTAATGAAAGAGGTTTGTAAGATCCTTGGGATCACGAAGATTA
CCACAACACCCTATCACTGCAGGACCAATGGAATTTGCGAGCGATTCCAT
CGCTCAGTTGCCCGAAGCCTCGCACAATATACCGATAAACAACAGGAAGA
TTGGGACAAATATTTGCCAATGATCTTGTTCGCCTATCGGACGTCGGTGA
ATGAATCTAGGAACTTTTCGCCATTTTTGCTGAATTATGGTTACGAGGCT
ACACTTCCAATCAATACAGAATTTAATCGAGATGACCCAGATTATTTGAA
CCTACCCGCCTACGCAGGTTGGCTAAAAGAAACCTTAAGTGAATTCTGGC
AAGCGTCAAAGGAAAACCTTGAGAAGTCACAGCTGGCGGATCACCAACGG
AACGTCCAATACGAGTCGCCATATGATGTTGGGGACAATGTGTTCGTGCG
AAAGCAAAAGCGCACGAAAGGAAAGTCATTTAAGCTCGAAAAGATTTGGT
TGGGACCTTTCATCATCAAGAAAGCGAAACACCCGATCTACCAGCTTGCC
ATGAAAGGAAGACCGAAGTGGATACATTACGATCGTTTAAAGAGGCACAG
CCCGACAACGGAAGTCGAGGTAGGAGCCCCTAATTCAGAAGCACAGAATG
AAGTCCTGAGGCAAGGTGAATCGGAGAAGGAAATTACTCAAAGAGTTCAA
GAAACTATGCATGAGAGCGTAGTTGAAGGTCAACAAGATGAAACCCGATT
ACCAGAAGGGCAATACCAGGTCGAAAGCGTTGTCAGTCATAAGAAGAGCG
GACGAACTGTTAAGTACAGAATACGCTGGAGTGGCTATGGTCCAGAAGAT
GACACTTCCAGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048555-exon-scaffold_143-1575043694:387956..389274 | TCONS_00048555-exon-scaffold_143-1575043694:387956..389274 | Clytia hemisphaerica | exon |
| TCONS_00048555-exon-scaffold_143-1575043694:382453..387812 | TCONS_00048555-exon-scaffold_143-1575043694:382453..387812 | Clytia hemisphaerica | exon |
| TCONS_00048555-exon-scaffold_143-1510915933:387956..389274 | TCONS_00048555-exon-scaffold_143-1510915933:387956..389274 | Clytia hemisphaerica | exon |
| TCONS_00048555-exon-scaffold_143-1510915933:382453..387812 | TCONS_00048555-exon-scaffold_143-1510915933:382453..387812 | Clytia hemisphaerica | exon |
| TCONS_00048555-exon-scaffold_143-1491911889:387956..389274 | TCONS_00048555-exon-scaffold_143-1491911889:387956..389274 | Clytia hemisphaerica | exon |
| TCONS_00048555-exon-scaffold_143-1491911889:382453..387812 | TCONS_00048555-exon-scaffold_143-1491911889:382453..387812 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:382453..389274 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00048555 vs. Swiss-Prot (Human)
Match: NYNRI (Protein NYNRIN OS=Homo sapiens GN=NYNRIN PE=2 SV=3) HSP 1 Score: 117.472 bits (293), Expect = 7.488e-26 Identity = 98/349 (28.08%), Postives = 162/349 (46.42%), Query Frame = 3
Query: 4635 ESGVWTHLTKRGKSVVHSLVVPQRFRADILDSIHKHPSGAHFGISKTVNKVWQTYFWPGLYQDVVCYIEKCEGC--RQHKGRSLKASLQSIPC--TRPWADLTVDILGPFHMTLSGNKYILTFVDRFTAWPEAFAIPSCESPVLAQILVDEIISRHGVPTTLLSDNGRNFVSNLMKEVCKILGITKITTT---PYHCRTNGICERFHRSVARSLAQYTDKQQEDWDKYLPMILFAYRTSVNESRNFSPFLLNYGYEATL--PINTEFNRDDPDYLNLPAYAGWLKETLSEF-WQASKENLEKSQLADHQRNVQYESPYDVGDNVFVRKQKRTKGKSFKLEKIWLGPFII 5651
ESG+ L +G VVP + R D++ S+H P GAH +T K+ +WPG+ + V Y C C R G LK P T PW++L ++++GP ++ G+K++L D T W EAF + +AQ+L+ + +R GVP L + G F +++ LG + + + C T+ + R+L ++ + W LP++ A+R S S + +PF + G E+ L P+ E + + + L + + L L E W+ + + EK++ +R Q E ++VGD V + R G S K W+GPF I
Sbjct: 1519 ESGL---LMFKGDKKPRVWVVPTQLRRDLIFSVHDIPLGAHQRPEETYKKLRLLGWWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPLRSTAPWSNLQIEVVGPVTISEEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLLQHVFARWGVPVRLEAAQGPQFARHVLVSCGLALGAQVASLSRDLQFPCLTSSGA---YWEFKRALKEFIFLHGKKWAASLPLLHLAFRAS---STDATPFKVLTGGESRLTEPLWWEMSSANIEGLKMDVFLLQLVGELLELHWRVADKASEKAENRRFKRESQ-EKEWNVGDQVLLLSLPR-NGSSAK----WVGPFYI 1852
The following BLAST results are available for this feature:
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