TCONS_00048554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048554
Unique NameTCONS_00048554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2494

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048554 ID=TCONS_00048554|Name=TCONS_00048554|organism=Clytia hemisphaerica|type=transcript|length=2494bp
TGTTTCGATAAATTATGCTGAATTATTTTATTATGATGTAAATTAGTTAT
CATATGGTGAAGGGATAACTGTTACGGGGTGATAATTGGTTTGTGCGAAC
GAACGTAATACGGAAGAAACAAACGTGACGTCTGGTGCCTCCGATGGCTC
GACCAACACGCCCTAAGTATTGCGACTACACAAAGGAAAAAATCAACCTT
TCATGCAGCTAAACGTTGCAAGCCATTACGTCAAAACTTGATTGATGATC
CGGGTACAATCACAGATTCCTTACTCGAAACTAAAGTGGAGTTTCTACGT
TCTCTGGTGAAGTAAACTAGCGTTCCAGCTAGCTGTTcgtctttattgaa
aaaattggccATAAAGAACTATGATTTACTTTGGTCTACTTTTAGCAAAG
ATGACGTGGTTGTATCGAAAGTTGATACAAGATATTTGTAGAAATGTTCA
CTTTTCTAGTTTGAAGCGTATGATAATATAATACTTACTGAAACTATCTT
CCATTTCAGTTGATTTCCCTTCCAATGTGCGAATGATGATCGTCGACAAA
CTCGCAGAAATCGAGTTCCGTTTAGCTGCTGGCACATCGGAAAAGATTCA
ACTGGGAGCTTTTGTTTCGGCTTTCCAATGCGCTCGTGACCCTATCGTGG
CAGAGGCAGAGTAACAATGGATCATACTGGTATCGAATTTCAGTTTTGTT
TGTCGCTTTTGCTACGAAACTTGCAACCAGGGGGCTTTCTTGCTTGTATA
AAAGACTAATAGTAGAATCGAGGCTACTACAATATTGGTTATCCGTATGA
CCTTTTTACCCCATATTACGTATTAAAAATGAGAGACATTTTTTAAAGGT
TCACAATTCGCAGAATTCGTACATTTACGGTATAAGGATTGAAACATCGG
TGTTATTTTCTAAAATGGATATTTGAGCTCAGCTGAATCTATTATTTTCA
CATGGACGGTAAAAAACAACCTTGCTTTTGGATTGGACTGGATTCGATCT
AAATACATAAAATGATACAACTATGccattttttcttgatttgtcgAATT
CTCTTTGTATATACATCATGCTATAAAGTCATATTAAGTCAGTCAAAAGA
TATGTAATtaaaacaaatataaaaaactttaaacataaataaaaagaaCC
GTTTTAAatatcaatttacaaattttcaattttctcgtCATATTAAATAG
TGTCTTCCTCCGCCTTTAGTAAGTCTTCCATATAAGGGTATTTGGTTCAA
ATTTAAAAGAACGTCGCATGCTTTAAGAATGTTTTGAATCATGTCTGTGA
TCCCAGGGCGTTCATACCATGACTTCTCATATGATTTTGAAGTCATTTGT
CAAAAAGGTTGAACTATGATAATAGTGCCTTCTAAACAAAGTCATTCGAA
ATCTCCACTTGGAACGGAGAGAATTATGTATAAATTTTCTGCATCTCGCG
GGATCCATTGTATTAACTGAGTGTTATTTTATCTGTTCAAGCGTTGTCAT
CTCTCTTTCGGTTCATCGTCAATTTTACGTCACCAATGTCACGTTAGCgt
caagattttttgctgtgcCACCATTTGTACTAAACATTTAAAAGCTTCCT
GAAGTCCGTCATTTTCCAATGCGGACACGTTGAAATGCGGAAAGCTTCCT
AAAACATGATGTTCTGAATCGTGTATACCTAACGTATTACTGAAATCCAA
ATCGTCTTTATTACCAACCACAACAATAGGCGGAATACAACATTTCCGTA
GTTTTTGTATATCGGACACAAGTTCTACTAATTTCATATAACTCTGTCTA
TTCTCTTTAGAATACACTAACAAATATCCATCAGATTCTAATAAAAGTTC
TTTATATCCATTCACCGTACCGTCCCACCGTGTCCCTTTTGGAACTGATA
TTTCAATATTGTATTGTTTAACATGGTTTGCCGTCTCGCTTTGTATAAAT
ACACCGCTGTTGTAAATCTCATTCTTCTTGCTGTATCGTAAAGCACTTAA
ATCATAATCTACACCGGCGTATGTTGCACAAATGGTTGATTTTCCAACAC
TGCTCGGTCCTAAAACCACAATTCTTTGATGTCCTTGAGGTTCGATTATT
GATGGCCCTGCACTGCTACCACGCTTTCGACTTAACCGGGGACTGGGACT
GAGAAATAATGAATCGCTTCTTTCACGGATTTTGTCGATAAGTCTTTCAG
AGAAGACATGcctaaaaataaatgaaaagaaaaagggtTAAAATCTTCAT
AGACTAAGAACTTCAGATACAATTTTCTTGTTGTCTGGTTTTTACGCCCA
CTAACATATAACGGCTAAATGATCTTCCCCTTTGGAACCTTGAAATTTAG
AACTCGAACAACTATCCTTATGATTGCTTCAATTTCTTGTTTTCATCTTT
CATCTTACCTTAATAGTTTCTTTGTAAATCCCATTTCTCTTTGCCCTCGT
CTTTATAATGTTCACATGTATTCGTTTATTAACTTTCATCAGAA
Run BLAST on NCBI

transcript from alignment at scaffold_143:376807..379762-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048554 ID=TCONS_00048554|Name=TCONS_00048554|organism=Clytia hemisphaerica|type=transcript|length=2956bp|location=Sequence derived from alignment at scaffold_143:376807..379762- (Clytia hemisphaerica)
TGTTTCGATAAATTATGCTGAATTATTTTATTATGATGTAAATTAGTTAT
CATATGGTGAAGGGATAACTGTTACGGGGTGATAATTGGTTTGTGCGAAC
GAACGTAATACGGAAGAAACAAACGTGACGTCTGGTGCCTCCGATGGCTC
GACCAACACGCCCTAAGTATTGCGACTACACAAAGGAAAAAATCAACCTT
TCATGCAGCTAAACGTTGCAAGCCATTACGTCAAAACTTGATTGATGATC
CGGGTACAATCACAGATTCCTTACTCGAAACTAAAGTGGAGTTTCTACGT
TCTCTGGTGAAGTAAACTAGCGTTCCAGCTAGCTGTTCGTCTTTATTGAA
AAAATTGGCCATAAAGAACTATGATTTACTTTGGTCTACTTTTAGCAAAG
ATGACGTGGTTGTATCGAAAGTTGATACAAGATATTTGTAGAAATGTTCA
CTTTTCTAGTTTGAAGCGTATGATAATATAATACTTACTGAAACTATCTT
CCATTTCAGTTGATTTCCCTTCCAATGTGCGAATGATGATCGTCGACAAA
CTCGCAGAAATCGAGTAAGTGTACTGTTATTTTTTTACAGTTGACGCTCT
CTTATTCGACTTTGAAGGGGAATTGGGTTTTTGTCGAAAAATGGAGCATG
ATGTGAAATAGAATATCGGCGTTTATGAGAGTCTCTTTTTGACGGTGACC
TTCAAAATTGTATAATGGAGCGTGTTGAATAAGAGAGCGTCGATTTAGAG
AGCGTCGATTTAGAGAGCGTCAACTGTTTATTTAATAAGTCTCTTTTTCC
AAAGGATACTCCTTGCTTCGAATTTTCAGTTTTTTCTGAATACCTTACCC
TAAAATATATTAATTTTGGTCTTTCAATTTAACAAATGAGCTCATCCCGC
AAATAGCAGGAAATTAGCCTGGTGAAGATGCTTTTGAATATATATGAAAC
ATCGAATTACGGACGCTTCTAAGAAAAAGTTTCACTGTTTTTTAATGACT
ACCATTCTCCTCTCCTTCTTTCTTAGGTTCCGTTTAGCTGCTGGCACATC
GGAAAAGATTCAACTGGGAGCTTTTGTTTCGGCTTTCCAATGCGCTCGTG
ACCCTATCGTGGCAGAGGCAGAGTAACAATGGATCATACTGGTATCGAAT
TTCAGTTTTGTTTGTCGCTTTTGCTACGAAACTTGCAACCAGGGGGCTTT
CTTGCTTGTATAAAAGACTAATAGTAGAATCGAGGCTACTACAATATTGG
TTATCCGTATGACCTTTTTACCCCATATTACGTATTAAAAATGAGAGACA
TTTTTTAAAGGTTCACAATTCGCAGAATTCGTACATTTACGGTATAAGGA
TTGAAACATCGGTGTTATTTTCTAAAATGGATATTTGAGCTCAGCTGAAT
CTATTATTTTCACATGGACGGTAAAAAACAACCTTGCTTTTGGATTGGAC
TGGATTCGATCTAAATACATAAAATGATACAACTATGCCATTTTTTCTTG
ATTTGTCGAATTCTCTTTGTATATACATCATGCTATAAAGTCATATTAAG
TCAGTCAAAAGATATGTAATTAAAACAAATATAAAAAACTTTAAACATAA
ATAAAAAGAACCGTTTTAAATATCAATTTACAAATTTTCAATTTTCTCGT
CATATTAAATAGTGTCTTCCTCCGCCTTTAGTAAGTCTTCCATATAAGGG
TATTTGGTTCAAATTTAAAAGAACGTCGCATGCTTTAAGAATGTTTTGAA
TCATGTCTGTGATCCCAGGGCGTTCATACCATGACTTCTCATATGATTTT
GAAGTCATTTGTCAAAAAGGTTGAACTATGATAATAGTGCCTTCTAAACA
AAGTCATTCGAAATCTCCACTTGGAACGGAGAGAATTATGTATAAATTTT
CTGCATCTCGCGGGATCCATTGTATTAACTGAGTGTTATTTTATCTGTTC
AAGCGTTGTCATCTCTCTTTCGGTTCATCGTCAATTTTACGTCACCAATG
TCACGTTAGCGTCAAGATTTTTTGCTGTGCCACCATTTGTACTAAACATT
TAAAAGCTTCCTGAAGTCCGTCATTTTCCAATGCGGACACGTTGAAATGC
GGAAAGCTTCCTAAAACATGATGTTCTGAATCGTGTATACCTAACGTATT
ACTGAAATCCAAATCGTCTTTATTACCAACCACAACAATAGGCGGAATAC
AACATTTCCGTAGTTTTTGTATATCGGACACAAGTTCTACTAATTTCATA
TAACTCTGTCTATTCTCTTTAGAATACACTAACAAATATCCATCAGATTC
TAATAAAAGTTCTTTATATCCATTCACCGTACCGTCCCACCGTGTCCCTT
TTGGAACTGATATTTCAATATTGTATTGTTTAACATGGTTTGCCGTCTCG
CTTTGTATAAATACACCGCTGTTGTAAATCTCATTCTTCTTGCTGTATCG
TAAAGCACTTAAATCATAATCTACACCGGCGTATGTTGCACAAATGGTTG
ATTTTCCAACACTGCTCGGTCCTAAAACCACAATTCTTTGATGTCCTTGA
GGTTCGATTATTGATGGCCCTGCACTGCTACCACGCTTTCGACTTAACCG
GGGACTGGGACTGAGAAATAATGAATCGCTTCTTTCACGGATTTTGTCGA
TAAGTCTTTCAGAGAAGACATGCCTAAAAATAAATGAAAAGAAAAAGGGT
TAAAATCTTCATAGACTAAGAACTTCAGATACAATTTTCTTGTTGTCTGG
TTTTTACGCCCACTAACATATAACGGCTAAATGATCTTCCCCTTTGGAAC
CTTGAAATTTAGAACTCGAACAACTATCCTTATGATTGCTTCAATTTCTT
GTTTTCATCTTTCATCTTACCTTAATAGTTTCTTTGTAAATCCCATTTCT
CTTTGCCCTCGTCTTTATAATGTTCACATGTATTCGTTTATTAACTTTCA
TCAGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030869XLOC_030869Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048554-exon-scaffold_143-1575043694:379199..379762TCONS_00048554-exon-scaffold_143-1575043694:379199..379762Clytia hemisphaericaexon
TCONS_00048554-exon-scaffold_143-1575043694:376807..378736TCONS_00048554-exon-scaffold_143-1575043694:376807..378736Clytia hemisphaericaexon
TCONS_00048554-exon-scaffold_143-1510915933:379199..379762TCONS_00048554-exon-scaffold_143-1510915933:379199..379762Clytia hemisphaericaexon
TCONS_00048554-exon-scaffold_143-1510915933:376807..378736TCONS_00048554-exon-scaffold_143-1510915933:376807..378736Clytia hemisphaericaexon
TCONS_00048554-exon-scaffold_143-1491911889:379199..379762TCONS_00048554-exon-scaffold_143-1491911889:379199..379762Clytia hemisphaericaexon
TCONS_00048554-exon-scaffold_143-1491911889:376807..378736TCONS_00048554-exon-scaffold_143-1491911889:376807..378736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:376807..379762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.9858	16.0584	22.6427	23.2875	1.36969	1.06837	3.74775	4.28759	3.91712	4.16286	3.78987	2.69749	3.78575	3.52973	4.52604	4.5886	6.63748	6.16846	1.75792	1.38389	3.45198	3.46818	6.89689	6.95543	5.28438	7.2102	1.9803	1.26142	3.92244	3.8452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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