TCONS_00048553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048553
Unique NameTCONS_00048553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048553 ID=TCONS_00048553|Name=TCONS_00048553|organism=Clytia hemisphaerica|type=transcript|length=1518bp
TTAATTGATTATTTCTTTTTACCATTCAAAAAAATGGTTCTAATGTAATC
AGCTCTCTTTTAAGGTCATGCACATTAACAAATTCTGTATTCTTTTCATA
GAAGCTACTGAGTGGTTTAACTCAAAGACACTATAGAAAtttgaaataca
atttttcgaaaaaaacaacTAAAGTTAAACACAATGTCAACTGATACCAA
TGGACATGCTACAATAAatgaGGTTTCCAACCTATCCATCAAAGGACTGG
GTGATATTCAACTCAAAACACCTCACATGACATCATCAACAGCTTCCAAG
ACAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGATGGCGAAAGGAGG
GATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAGTTGCTGAAGAAG
CTGGTGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGA
CGTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGATGATAAAAGAGAT
CATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCACT
TCGCCGAAGCACAAATCTTGGAAACACTCGGCGTTGATATGATCGATGAA
TCTGAAGTATTAACGCCAGCTGACGAAACGCATCACGTGGACAAAGAACC
CTTCAAAATTCCTTTCGTATGTGGTGCACGTGATTTAAGTGAAGCCTTGA
GGAGAATCAGCGAAGGTGCTGCCATGATCAGAACTAAAGGAGAAGCTGGC
ACTGGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTCGCA
GATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTATGCTA
AAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATGGGA
CGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGCCACACCAGCGGA
TGTTTCACTTCTCATGCAATTGGGTGTCGATGGTGTTTTCGTTGGGTCCG
GAATCTTCAAGAGTGCTGAACCAGAGAAGCGTGCTAAAGCAATGGCCGCT
GCAGTAACCTACTACAACCAACCGGCTAAAATAGCAGAACTGAGTGAAGA
CCTGGGACCAGCCATGTCTGGGCCCACACATAGAGAATTGAAACACCATA
AGACGGACACTAACCCTGGATTCAAAGCTGTATCTGTAGTCGAATAAACT
TATTTAATATTAGATttcaatatatatttttagGAAGGAAGGATATAATC
CTTGGATAAATATTGcgtgattttttttatgaataatgaattaatttttt
tttgttaatatactgtactttttttaaatactacAATATGAGCGAACTTG
AAAATATAATACTGTAATGGAAATGATATAATACATAAAAAAGATAATAG
AAGATATAAAGCATTGAATTTACAAAAGTCTCGATTTTTTTTCGTAGTTT
TACCGGTCACGGAATCAAAAGATATTAACAAAAAGAATCTTCGAAGATAT
TAAAAAATGGATATTAGT
Run BLAST on NCBI

transcript from alignment at scaffold_143:347694..353347-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048553 ID=TCONS_00048553|Name=TCONS_00048553|organism=Clytia hemisphaerica|type=transcript|length=5654bp|location=Sequence derived from alignment at scaffold_143:347694..353347- (Clytia hemisphaerica)
TTAATTGATTATTTCTTTTTACCATTCAAAAAAATGGTTCTAATGTAATC
AGCTCTCTTTTAAGGTCATGCACATTAACAAATTCTGTATTCTTTTCATA
GAAGCTACTGAGTGGTTTAACTCAAAGACACTATAGAAATTTGAAATACA
ATTTTTCGAAAAAAACAACTAAAGTTAAACACAATGTCAACTGATACCAA
TGGACATGCTACAATAAGTAAGACTGCTTTTTCAAATTGAATAGGTTTCT
AAGATTGAAATTTATTCAAACCGTTTTGGCATAGATTATGAGGATTTAAC
TTTATGAGAAAATTTGTTTGCTTTTTTTCGGACACCCTGTTTACATAAAG
TGATTGTGTCTAGTTGGCTCAACGTCTCAACACCAGATTGATTGAGTTTG
TTTTTGAGTTCATTAAAAATCGAATTTCATTTTAAATTTTTAGATGAGGT
TTCCAACCTATCCATCAAAGGACTGGGTGATATTCAACTCAAAACACCTC
ACATGACATCATCAACAGCTTCCAAGACAGGTACCAATTCAGACCTCTAC
ATTCTTAATCATAATAAAAGCAAAACAAGATTGATTGTGGCATGAAGTGA
AAATCAAAACGGACCTTTTTTTTATAAGCAATTGGGTACCTCTTACTATG
CTTAGTATTCTATCGTTCTTGGAAAATAGAGCCATTGTTTAGGTACCAAA
AGCTGAGTTATTCTACTAATTTCGCTTATTTGAAATTTAAAAAATGAGAA
AGTTTAAGCTCAACACTACAAAATAGGCAAGTTGTACCATCATCATTATG
AAATGTTCAAAGTAAATTTCTCACTCACTTCAGAAGCATTCATAAACTTT
TCAGTTTGATATCTAATAAAGGATGGCTACAATAATTATTTATTATTTTT
TTAACTTTTACTCCAGGTTCATTCAAGGTGAAAGCCGGTATGGCACAGAT
GGCGAAAGGAGGGATTGTCATGGATGTCACCAATGCTGCTGAAGCTAGAG
TTGCTGAAGAAGCTGGTGTAAGTATCTAATATGAAAATAGTGGTGGTGTA
TTCTGAAGGTGATCAGTGTTTTTAAATGGTTGTCACTAAAATTACTGTCG
AGCCCGCAACTTTTCCTTGTCTCAAGAAAAATTATTCTTTGGGGGATTTA
TTAAACTTGGTTTTGAATCTATTCTACTACAGGCCTACTGCAGACTACTG
AGATTGAATGCTGGGGTGGATTTTATGAATTTTAGCATGTCTGAAGGAGA
AATTTTCTAATAATGAACTTGCAACAAATTTCTGCACACCACGGGCTTAT
GATTTAATTGACTTTAGTTTTGATTTCTATAGGCATGCGCAGTAATGGCA
TTGGAAAGAGTGCCAGCGGATATCCGACGTGACGGTGGAGTGGCAAGGAT
GTCAGATCCAAAGGTTTGACGCTTTGTTATGATTACCGTGATTCCTGGAA
ATGTAAATCAATGACTCTCTAATTCTTTCTTGATCTTCAAGGGACCGAAA
TTTTCTTTGATTTTGAGAACGATTCAAATTATGGAAGTTCGAATTAGCAA
GAGTTCACAATATAGCCATCGTTCAATCTTTTCCATTTCTAACCTTTCTG
CAATTTGAACTCTCAACAAGAAATTCGTATAAAATACTATCCTTGATTCA
GATTCGAATCTTTCTCTAATGTGAAGATAAATTTTTGTAATTCATTTTAT
TGACGATCGAATAAGAGAGTAACAGCAGGTAACCGTGGTAATGAATTTCT
TTGTTTAAAAACAAGCATTTTTGAACGTACCCTATCTTTACCTTCCCAAA
AAAGTTGGATGTTAATGACGTATCATTCTTTTTCCAGATGATAAAAGAGA
TCATTGAAGCAGTCACCATTCCAGTTATGGCCAAATGTCGAATCGGTCAC
TTCGCCGAAGCANGGTGGTGTATTCTGAAGGTGATCAGTGTTTTTAAATG
GTTGTCACTAAAATTACTGTCGAGCCCGCAACTTTTCCTTGTCTCAAGAA
AAATTATTCTTTGGGGGATTTATTAAACTTGGTTTTGAATCTATTCTACT
ACAGGCCTACTGCAGACTACTGAGATTGAATGCTGGGGTGGATTTTATGA
ATTTTAGCATGTCTGAAGGAGAAATTTTCTAATAATGAACTTGCAACAAA
TTTCTGCACACCACGGGCTTATGATTTAATTGACTTTAGTTTTGATTTCT
ATAGGCATGCGCAGTAATGGCATTGGAAAGAGTGCCAGCGGATATCCGAC
GTGACGGTGGAGTGGCAAGGATGTCAGATCCAAAGGTTTGACGCTTTGTT
ATGATTACCGTGATTCCTGGAAATGTAAATCAATGACTCTCTAATTCTTT
CTTGATCTTCAAGGGACCGAAATTTTCTTTGATTTTGAGAACGATTCAAA
TTATGGAAGTTCGAATTAGCAAGAGTTCACAATATAGCCATCATTCAATC
TTTTCCATTTCTAACCTTTCTGCAATTTGAACTCTCAACAAGAAATTCGT
ATAAAATACTATCCTTGATTCAGATTCGAATCTTTCTCTAATGTGAAGAT
AAATTTTTGTAATTCATTTTATTGACGATCGAATAAGAGAGTAACAGCAG
GTAACCGTGGTAATGAATTTCTTTGTTTAAAAACAAGCATTTTTGAACGT
ACCCTATCTTTACCTTCCCAAAAAAGTTGGATGTTAATGACGTATCATTC
TTTTTCCAGATGATAAAAGAGATCATTGAAGCAGTCACCATTCCAGTTAT
GGCCAAATGTCGAATCGGTCACTTCGCCGAAGCACAAATCTTGGAAACAC
TCGGCGTTGATATGATCGATGAATCTGAAGGTAGCTTTAATAATTTAAGG
AAAAAGATTAGTTGATACTCACTTTTAAAATTGTCATTTTCAAATCAGTA
TCAAGGCAAAGACCAATTTAAGTCAAAGTTGGCAACGAACATCATTTTCG
TTCATAAGTTCTAAATTCAGAATGAGGTACTTATGTTACAAAACCTGATT
ATTTTGCTGGCTGCATGCAAAATTGCTTTAAGAAATCTTTCCAAATTAGG
AGAAGTGGAGCCAAAATTTAATATTTCTTTTAAAAAAGCGTGTATTACCT
AAGGTAAGCTGAATGTTTTTGTTTTATTTATTCGTCTAGTTTATACTCAA
ACAAATTGTACTAAATATTATATTTTCCCAGTATTAACGCCAGCTGACGA
AACGCATCACGTGGACAAAGAACCCTTCAAAATTCCTTTCGTATGTGGTG
CACGTGATTTAAGTGAAGCCTTGAGGAGAATCAGCGAAGGTGCTGCCATG
ATCAGAACTAAAGGAGAAGCTGGCACTGGTATGAACCTTTTTCGGGACAG
TTTTTTTAGGATACTTGAAATATCCTGGTGAGGATAATCATTATAATCAT
TCCAACCTTTTAATTTGTTTAATGGTACCTTCAAGGTTGTGTCGTCTTTC
TCATTGTTTATTGATATTCATAGCTAATAATCATTTTCCAATTTCCTCGT
ATTCGATGTCTGTTCATATAAACTCTGTACTGGAAGACAAGCACTGATCA
ATTTCTGTTGGGCATCGGTTTGTCTCAAGAAATGTCAGTGAAAAAATCAT
GGTCATTATAAAAAACCCCGGTCTGGCAATGTATTGTTTTAGCTTTTTGT
TCAATTTTCTTTTGTTACATACAAAAGACAAGTTGCGATTTGCATACTTT
TATCACGTTACCAAAATCTCCTCTTGGGATTGGTCTATTTTCTAATCACA
TGATCAAAAAGTTAGCAAAATAAATCGATTTTGGTACGTAAGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNGGGGGGGGGGGGGTTACACCCTCCAAAAAGCCCAAAAAGAT
GGGGGCTAAAGATGTTTCAATTATTTGGGAGCCCTAATGTACTGGGGCGA
GCTAAAATTTCATCACTTAACATAGGGGCTGAATAATTCATCTTAATGGT
TGGCTTCAATTACTCGAATTAAAACTCTTGAAGCTGAAAGCTGAAAGATT
TTCGCCTGCGGACCAAATTCTTTTATATAAAATGAGCAAAATATTATTAT
CTTAGCCTTTAAACTGCAACATAATTTACATTGAATAACCCTTTTTTGTG
GAAGAAACCCTAACCCCAGGCTGACGCTATGATCAAGCTTTGACAATCTA
AATTTAGGTGACGTAGCTGAAGCAGTCCGCCACGCTCGAACCATTCGTTC
GCAGATCCGAAGAGCACAAGGGATGGATAAATGCGAACTGCACACCTATG
CTAAAGAACTCCGTGTACCTTTCGACTTACTCCAGAAAACTGTAGAGATG
GGACGGTTACCTGTCGTCAACTTTGCTGCTGGGGGACTTGGTAAGATAAC
CATAAAAGGTTTACGTTTCTAGTAAAAACCTTTGAATTGTAGAATGATAA
ATTTCAATACTTGTATATTTTTAAGTAGAAAGTGTTTTTGGACATCGCAG
TACTTTGGAAGGCTAGTTATAGCAATACGCTGATAAGTATTTCGCTTCAT
CAAAGCTTTTATCTAGGGCCTTGAATTCCTAGCCTATTACAGACTTTTTT
CTACGCAATGACAGAAAATGGAAGAAAAATACCGGTTTTTGGTGAGGTAC
GCGCTATTGAATTCCTCGAGTTTTTAATTGATAAAAACTCTAAGACGTCT
GTCATCTTTTAACCTTCAAAATGTTCCACTTGGCTGTTGAATGAGCTAAT
AAATTAAATCTGTTGATCTGCTTCAAGACTCATTGGGCCTACTTAGCCCT
CACCAAAAGCTTGCTCAACCTTGTTAAACTTTTGTAACTATATGTAATAT
TTTATTCTCCCAGCCACACCAGCGGATGTTTCACTTCTCATGCAATTGGG
TGTCGATGGTGTTTTCGTTGGGTCCGGAATCTTCAAGAGTGCTGAACCAG
AGAAGCGTGCTAAAGCAATGGCCGCTGCAGTAACCTACTACAACCAACCG
GCTAAAATAGCAGAACTGAGTGAAGACCTGGGACCAGCCATGTCTGGGCC
CACACATAGAGAATTGAAACACCATAAGACGGACACTAACCCTGGATTCA
AAGCTGTATCGGTGGTCGAATAAACTTATTTAANCAAAACCGACACTAAC
CCTGGATTCAAGGCTGTATCTGTAGTCGAATAAACTTATTTAATATTAGA
TTTCAATATATATTTTTAGGAAGGAAGGATATAATCCTTGGATAAATATT
GCGTGATTTTTTTTATGAATAATGAATTAATTTTTTTTTGTTAATATACT
GTACTTTTTTTAAATACTACAATATGAGCGAACTTGAAAATATAATACTG
TAATGGAAATGATATAATACATAAAAAAGATAATAGAAGATATAAAGCAT
TGAATTTACAAAAGTCTCGATTTTTTTTCGTAGTTTTACCGGTCACGGAA
TCAAAAGATATTAACAAAAAGAATCTTCGAAGATATTAAAAAATGGATAT
TAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030868XLOC_030868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048553-exon-scaffold_143-1575043694:353131..353347TCONS_00048553-exon-scaffold_143-1575043694:353131..353347Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:352818..352904TCONS_00048553-exon-scaffold_143-1575043694:352818..352904Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:352331..352431TCONS_00048553-exon-scaffold_143-1575043694:352331..352431Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:351063..351143TCONS_00048553-exon-scaffold_143-1575043694:351063..351143Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:350518..350638TCONS_00048553-exon-scaffold_143-1575043694:350518..350638Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:350020..350166TCONS_00048553-exon-scaffold_143-1575043694:350020..350166Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:348808..348990TCONS_00048553-exon-scaffold_143-1575043694:348808..348990Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:348096..348334TCONS_00048553-exon-scaffold_143-1575043694:348096..348334Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1575043694:347694..348035TCONS_00048553-exon-scaffold_143-1575043694:347694..348035Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:353131..353347TCONS_00048553-exon-scaffold_143-1510915933:353131..353347Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:352818..352904TCONS_00048553-exon-scaffold_143-1510915933:352818..352904Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:352331..352431TCONS_00048553-exon-scaffold_143-1510915933:352331..352431Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:351063..351143TCONS_00048553-exon-scaffold_143-1510915933:351063..351143Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:350518..350638TCONS_00048553-exon-scaffold_143-1510915933:350518..350638Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:350020..350166TCONS_00048553-exon-scaffold_143-1510915933:350020..350166Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:348808..348990TCONS_00048553-exon-scaffold_143-1510915933:348808..348990Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:348096..348334TCONS_00048553-exon-scaffold_143-1510915933:348096..348334Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1510915933:347694..348035TCONS_00048553-exon-scaffold_143-1510915933:347694..348035Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:353131..353347TCONS_00048553-exon-scaffold_143-1491911889:353131..353347Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:352818..352904TCONS_00048553-exon-scaffold_143-1491911889:352818..352904Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:352331..352431TCONS_00048553-exon-scaffold_143-1491911889:352331..352431Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:351063..351143TCONS_00048553-exon-scaffold_143-1491911889:351063..351143Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:350518..350638TCONS_00048553-exon-scaffold_143-1491911889:350518..350638Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:350020..350166TCONS_00048553-exon-scaffold_143-1491911889:350020..350166Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:348808..348990TCONS_00048553-exon-scaffold_143-1491911889:348808..348990Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:348096..348334TCONS_00048553-exon-scaffold_143-1491911889:348096..348334Clytia hemisphaericaexon
TCONS_00048553-exon-scaffold_143-1491911889:347694..348035TCONS_00048553-exon-scaffold_143-1491911889:347694..348035Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:347694..353347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
140.244	142.099	164.499	156.33	75.4663	58.7549	27.3472	28.1419	19.2368	18.2755	13.633	15.2708	11.9524	11.5554	20.6379	38.6964	50.3415	45.1073	10.8047	9.8828	46.9883	50.2993	63.6573	60.0362	21.0273	22.5563	34.7665	28.5425	141.582	112.007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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