TCONS_00048537 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048537
Unique NameTCONS_00048537
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048537 ID=TCONS_00048537|Name=TCONS_00048537|organism=Clytia hemisphaerica|type=transcript|length=1197bp
TcttagcaaaataaaaaatgtcatcaCTTTCAAGAACCACAAATTCAGAT
TCAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTT
GGAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACA
GCAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGAT
GCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAG
AATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAG
GAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGA
GGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGT
ATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGC
GAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCG
GTCTGTGAATTCAAAAGTTCTAGCGATATGAAATGGGCTCTCAAGAACTT
AGACGACACAAAATTTAAATCACATGAGaacGAAACTTCATACATTCGCA
TAAAACAAGACAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCT
CCAAGAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCACGCTCAAGATC
AAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGCAAAAGCCGTA
GCAAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAAAAGCAGAAGT
CTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCAGCAGAAGTAA
AAGCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTAAAACATGCAA
ATAGCTGTCTATcatatgtttaaaaaaagcgAAACTTCATATTTCTAGGA
TTTTTTTATCaggaaactttttttaaaccaaATTGTAAAGCACTTACATg
aactttttttttgcatttacttgtaacaaaaatttactgctttttattta
agttttcatttttatcattgtaatattttgctttttactgtggtaatttt
ttttatattatgctACTATAGCTAGTAGTTTTTAAGATTACTTTGTGACT
AGATGGAATTAGACTTTGGCAtatgtataaaaatttgaaatacaaaC
Run BLAST on NCBI

transcript from alignment at scaffold_143:84471..89236-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048537 ID=TCONS_00048537|Name=TCONS_00048537|organism=Clytia hemisphaerica|type=transcript|length=4766bp|location=Sequence derived from alignment at scaffold_143:84471..89236- (Clytia hemisphaerica)
TCTTAGCAAAATAAAAAATGTCATCACTTTCAAGAACCACAAATTCAGAT
TCAAGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTT
GGAGGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACA
GCAGATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAA
GTATATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTA
CCTCAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTGTGCAATCTG
TTTTTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATA
TACTGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGA
TTAATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTA
AATAATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTG
AAGATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAA
AAACTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAA
CATTTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTT
TATTCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTT
GACGGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTC
ATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAG
GAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCAT
CGTATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAA
AGATCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGG
ATGGCACTGCGGTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCT
CTCAAGAATTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACA
TTGATTGTATCAGCTCATTTTCTTTTAGGTTCTTACATTAGTTTCCATTC
CATTCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCAT
TTAATTTACTTACCTTTTANCTAGGGGCTAAAAAATCTGAAAATTTTCTG
ACCCTCGGCCCCAACCATGGTGGGGCCTACAGGTGTCACTGTATACCAAA
TTACTTTAGGTGTACAAACTTTCGCGAGCAGAAACTTTCGCAATTTTCGC
GAATTTTGGCCCTTTTCGCGAAAGTAAATGTATTCAAAAATTCTAGGAAG
GACCATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGATA
ATTTGTAAATCTTCAAACTTTGACTATAAGACTAATAAGTCAAAGGACAA
ATGTTTTAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCATTTTTGCA
TGTGAAAATTCTCTATTCTACGTCTTGATTCGCGAAAGTTTATGCTCGCG
AAATATATTTTCATTCAATTCGCGAAAGTAAATGTCGTGAATTTCGCGAT
TTTTCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTCGAATCTTATGCAGA
ACGACAGTACAACATAAAGCAAAAAGTGGAAACTGATGGCTCACGTATTC
AAAATTGAATGTCTTTTGTGTTGTGATGCTTTTAAAGTGTGCTGATTATC
TCATTGTTCAAATTGTTATCTTAGCAAAATAAAAAATGTCGTCACTTTCA
AGAACCACAAATTCAGATTCAAGAATCTATGTTGGTAATTTACCACAATT
TGTGCGTCAAAGAGACTTGGAGGACCATTTTGATCGATATGGTAAGGTGA
GGGGTATTGATATACACAGCAGATTTGATCCCGCTTTCGCCTTCATTGAA
TTTGAAGATTCTCGGTAAGTATATTGCTCTCTCAAGGCTTACAAGAAATA
CTTGCATTATTTCATTTACCTCAATGTGCATTTTTTCCATGAGCTTTCGC
TTTGGTTTTTGCAATCTGTTTTTTAAACTACTTTCATGCAATACATTGGG
CTAATTATTACATGGATATACTGGGATATAGGCTTACATAGCATCAAGCT
GCCTGTCATTAAAGAAGATTAATTGTGACATAAAGAAGCTCTATTTGCAT
AGAAAATCTAGGGGATTAAATAATATTGGCTGGGTAGTTCAACTCAATGA
GGACACTATACTTTGTTGAAGATGTTACCCTTTTCGAAGGAATATAACAA
CCTTATTGCAAAGCTCAAAAACTGATCATCTTTTATTTCAAAATTGAGAT
GCTCTTTTTCTTAGAAAACATTTGGAATTTATCCTTTTTTGCTAAATTTA
TTTATTCTGAATATTTTTTATTCAGGGATGCTGATGATGCAGTATATGGA
GAAGATGGCAAAAGGTTTGACGGAAACAGAATAAAAGTTCAATTTCCAAG
AGGAACTCCAAGAGATTCATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAG
GTCGAGGTCCACCTGGAGGAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCA
CCCTCTAGAACTGATCATCGTATCATTGTATCTGGATTACCAAAATCAGG
CAGTTGGCAAGATTTAAAAGATCACATGCGAGAAGCTGGTGAAGTTGTTT
ATGCTGATGTTTATAAGGATGGCACTGCGGTCTGTGAATTCAAAAGTTCT
AGCGATATGAAATGGGCTCTCAAGAACTTAGACGACACAAAATTTAAATC
ACATGAGGTATTTACACATTGATTGTATCAGCTCATTTTCTTTTTGGTTC
TTACATTAGTTTCCATTCCATTCTCATAAAAGAAGTATTTACTACCTAGG
CTTTAAATTCCTCCTCATTTAATTTACTTACCTTTTATAAACACTTTAGA
AAATCCATTATAGTAAATTCATGTTTATCAAACCAAACCATGTGAAGATG
ATGAACAATATAAATTAGGCTGACATATTCTGTAATAGATGATACAATCA
AGCTAGACTATTATTATTTTCCAAATTAAAACAGAAAACTTTTTTATTTT
GTTACTAGCTGGGAACCTCTCTCAGTTACACAACCACATCCATCTCATTG
ATGTTGGGATAATAAAACATAAACCAGACAGGATACAAAGGAGAAAATTT
CCACAGGATCATTCCCTAAGACCTACAAGGAGCAAGCCAAATAAACAAAC
CACAACCCAGATGGTCATAAAAGGAAAACCCCTTGTCCCTCCATGAGCAA
ATCTGTAAAAGGCACACACCATGTGAAAAGCCAGAAAAAAGGAAAACCTT
AATGCTAGATGTGAGGTCAACTATCAATCCAAGGAAATCCCAGAAGGCAA
AAAAGAAAACCCTTAATCAAAAAGGAGCAAATACTTCCAAAAACCGAAAG
GATTTAGCTGTAAATAAGGAAGACCTATTCCAAAAACATCAGGAGTTGGA
TACTGTACATAAATAAATAGGATTAGTTTAAGATAAATCCACAGGAGGAT
AAAGCCATATTTCATTTCTTGGTAAAACTGTTTTATATATTTTTAACATT
GATTTTTTAAATTTAGAAAATATGATCTTCTTAAGTCTTAAGATTCTATA
TTGATTAAACTCAAATTAAAATCTTCTTTTTTTTAAAACACATAGTTGCT
ATACTACCTTTTTTTAAATCAATGATTTTGAAATTAAAATTCTGTAGTTA
ATTTACTATGAAGAATTTGTAGCCTTTAGGAACTTTTAGCAATTTAACGT
TGTTTATTTCATTTTCAGAACGAAACTTCATACATTCGCATAAAACAAGA
CAAATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCAAGAAGGT
AAAAATAATTTAGTAATATAGTGTTTTCAAAGTTTTCAAAGTTGTTTTCT
TCTCATAGACAGCCAAAAAAGGCAAATTCATTTATCGAAAGTCTCACGCT
CAGTCAGCTAATAATAAAATGTCTACATCATTGAAGCTTACAATATAAAT
TTGAAAATATTCCTTTTTCTATAAATAGGTTGGGAAATAATTAGTTTATC
TAGCAAGGTCAGTGAAAACTTGTTGGTGTTGACACAATGTCGGTGTTAAA
GTATTAATTAAAAAAGTAAGTAACTTTAAAAAGTTAATCTCTTTTGAAAA
TGTAATAAAGATGATTATTCTTTTTAGAAGCCGCTCACCAAGGAGAAGAT
CTAGATCACGCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCA
AGCCGTAGCAAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACA
AAAAAGCAAAAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTC
GCAGTCGCAGCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTA
ACGATTTTAAAACATGCAAATAGCTGTCTATCATATGTTTAAAAAAAGCG
AAACTTCATATTTCTAGGATTTTTTTATCAGGAAACTTTTTTTAAACCAA
ATTGTAAAGCACTTACATGAACTTTTTTTTTGCATTTACTTGTAACAAAA
ATTTACTGCTTTTTATTTAAGTTTTCATTTTTATCATTGTAATATTTTGC
TTTTTACTGTGGTAATTTTTTTTATATTATGCTACTATAGCTAGTAGTTT
TTAAGATTACTTTGTGACTAGATGGAATTAGACTTTGGCATATGTATAAA
AATTTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030861XLOC_030861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048537-exon-scaffold_143-1575043694:89041..89236TCONS_00048537-exon-scaffold_143-1575043694:89041..89236Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1575043694:86430..86811TCONS_00048537-exon-scaffold_143-1575043694:86430..86811Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1575043694:85339..85418TCONS_00048537-exon-scaffold_143-1575043694:85339..85418Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1575043694:84471..85009TCONS_00048537-exon-scaffold_143-1575043694:84471..85009Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1510915933:89041..89236TCONS_00048537-exon-scaffold_143-1510915933:89041..89236Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1510915933:86430..86811TCONS_00048537-exon-scaffold_143-1510915933:86430..86811Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1510915933:85339..85418TCONS_00048537-exon-scaffold_143-1510915933:85339..85418Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1510915933:84471..85009TCONS_00048537-exon-scaffold_143-1510915933:84471..85009Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1491911889:89041..89236TCONS_00048537-exon-scaffold_143-1491911889:89041..89236Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1491911889:86430..86811TCONS_00048537-exon-scaffold_143-1491911889:86430..86811Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1491911889:85339..85418TCONS_00048537-exon-scaffold_143-1491911889:85339..85418Clytia hemisphaericaexon
TCONS_00048537-exon-scaffold_143-1491911889:84471..85009TCONS_00048537-exon-scaffold_143-1491911889:84471..85009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:84471..89236 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.0251	0	0.000367152	8.30463	101.019	88.4566	110.601	117.184	48.8032	70.5275	45.6455	40.7052	25.3695	37.1468	0.0054998	5.42796	3.1496	6.33315	0	1.32858e-07	0.103583	0.00030222	1.55162e-07	0	30.6326	44.0585	8.24056e-05	1.69184e-06	0	0
Blast
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BLAST of TCONS_00048537 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 1.633e-54
Identity = 103/191 (53.93%), Postives = 129/191 (67.54%), Query Frame = 3 
Query:   42 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHENETSYIRIKQD 611
            N+D RIYVGNLP  +R +D+ED F +YG +R ID+ +R   P FAF+EFED RDA+DAVYG DG  +DG R++V+FPR       G G G   G      G    R          +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF    DM +A++ LD+TKF+SHE ET+YIR+K D
Sbjct:   13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 195
The following BLAST results are available for this feature:
BLAST of TCONS_00048537 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF11.633e-5453.93Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
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