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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048514 ID=TCONS_00048514|Name=TCONS_00048514|organism=Clytia hemisphaerica|type=transcript|length=1391bp TTccattttatcaaaacaaacactGAAACAGTATAGGGCGGaacCTTGAA TTTCTTGGTGGCAGTCATAATCAAAAGCAATGTTGATGGATTGGTTTGTT TCATTTCTCAACCTATTCACAAAGTTTGGACCAGCCACTCGAAGTTTATC TAAATTCCTACTACATAGTATCACTGGCAAATGTGAACTAGAGAGAATCT GTGACAGTGGAAAGTATGATTTTAGACAATGTCAGGAGATTGAGTATGct ttataccattcaaagaaTGAAAATATCCGTAAAATCTTAGTTTCTGATGC AATGAAAGTTAAGGAGGCAATGCAGACTATTTTACGTTTCAAGCGAATCA TTCCCGAAGAAGGTATTGCTTTCTTGAACACTATGCccaaatttttgcga aaaatagTTAGCTACAATAAATTATTTGGTGATGTTGAGGAGTTAAAATT AACGAAATATGATGAAGAAAATACATCACACGAAGAGATGTTGTATCGTT TGTGGACCCTCTTAAAGGAGGGTGACGACCTCAAGGAGCGCCATACTAAA CGTTGGACTGAGATTGGATTCCAGGGCAAAAATCCTGCGACTGATTTTCG TGGTATGGGTATATtatctttgaaaaatatgttgtacttgttggaaaata aaaaagacgtTGGCATGAAGATTTATGGACTTTCTAATCACCCTAATTAT GGATTCTTCTTTGCCATTGTTGCTATCAATTTTACTGGTACCGCGTATGA TTTCATGAAGAATGGAAAGCTTAAGGGTTATGCTTACAATTTAGCTGCCG AGGAATACACACTGGAGgactttcaagagtttttctGTGAAATGTTTTTG GAGTTTGCTGAATACTGGGTGATGAGAGAACCACCGAATATTATGTCTTT TAATGCTATACGTGATGACTATTTGAAGGAAGTTCATAAGAGACTGGATA CTGGGAACTGGTCTATTGATTAGTTTTtatgttttagtttttatggtttg tTAGAATGTTTGCAATGTAAAGCATACTGCAGCGTCTCTATTTTCAATAA TTGATTTAATTAACTTAGtaaggttttttttaaataaagcaaTAAGATGT TTTTGACATATTTTACAAAGTACCCTTTTGtcagaattttgaaatataaa aatgaATTGCACTGCATCCTTAAAGCTTTTTCTGAtagttttttttaggt tttctGTTACTTTTTTCGGTTAAATTTGCCCATATATGCGTCAATGAGGG ATCTATCATATTGTCGTGTTTGTCAATTTattcaataacttttttttaaa ttcaacagTATAATATTTATTTTGGGAGCACTAATATTTTAGGTATTATA AGAATAATTAATTTTGATAAAGTAGATGCGATTTTTCCTTT Run BLAST on NCBI transcript from alignment at scaffold_143:403761..412819+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048514 ID=TCONS_00048514|Name=TCONS_00048514|organism=Clytia hemisphaerica|type=transcript|length=9059bp|location=Sequence derived from alignment at scaffold_143:403761..412819+ (Clytia hemisphaerica) TTccattttatcaaaacaaacactGAAACAGTATAGGGCGGGTAagtaac
ttttttggggggtatcttcagatcttcttcgcctggtgttttttctgttc
catatagtgatagaagacatttaaaaacttttttttcaattttatgcatt
tttgacgaattccagcccaaaaaactgcccgggggagcttttttgaggtt
tattcttcatatctcttccaaaacttgctcaaactcaagatttagtgttt
ttttatgaaaatttaacctactGTAATGTgatgcattctgcgcaattttt
aaggtcataagtccaaaattggccgaatcCCCCTGGgggtaccgtgagag
gtcctaaagccgacagcccagcctaattccgaccccccNtgggcctattt
gtggtcaaaaaggtgtttaattttgcataaattaatgcagattgtgggga
aattccctgttttccatcagttttttaccacaaataggcccataaatttt
gatctagagaagttgggactttggtgtaatacacttttttgctcagtttg
aagagctctatcatgtggtatagatttttttttaatttgaagaaccccca
aaaatcatgaatttccaggccttgcaattttgcctgaaaacgcaaaaaat
cgccaattactcgttacttgcacgataatatcgtggaaactttttgattt
tgtaatctacacatactaattcgcgagtttccgttgttNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNtgtggcgtttttttgcaaacttcaaaaaactgat
ttttgtcccgcctttgcgggactttggcttaagtgcttgagtgcagcata
gggtataaagtccaaatatgtgtttcccgtaatttttgtatgaagagtta
ggtctatactgtccctctccaagttgaacaataaactaattgctagaact
ctcgaaacaaaacatctaacaagatagctgtaatgtcaagatgtcaatta
atgtaattaaaaaaagtgcgagttgtaaaaataattaccttttattctgg
atcagttgctcatgtttaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNCCGATCTTATCCATTGATGAtct
gcggcactatcgtaaagctagaatcgcttcgcgtacttttcgcttgagaa
aatgattgacagattgaagtttttcatacCCGCGGTGCGCGCTGCGCGGG
AGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
attgatgtttgtaagtgcactttatagttttgattcccattgaagaatca
tattctggttttcatgttattagatgctgttttagagctttaggtctaca
ctgtttgggtagcaaaaaatgctgtttaaggccaattttgcaagttcata
aactttaaactaattgattcacacgtctgaaattttcagagatggaagtc
ttcagtaaagtctttaagcaaaatgaatttcaagattttcactttcgAGT
CACTTTTTGAGTCACGTGAGTCAAATCGcgtgtcttattggactagagaa
agttAAAGTGAAATCGCACCATCtaattggatgaaaaaattattgtgtGA
ACTGGGGCTGAATATAattctcattttaaattcaagatggcggcaagAAA
AGTACGCTTTTTTGCTTTGGAAAAAATGTTGtaaatcttttactttttat
cgccttaggcaaagtttcaaacactacaaaTGACTTCTTCTCGGGTTACC
AACTCTTAAAAAACTATGATCAAAGATGGTAGATATAGCTTGGTctaggg
atatataaaggtcagtgatatTGACAAGTTTCTTCAGATCAgaatatatt
ttactttttatcattCAATATCAGTACCGtgaatggtcctaaatccgaca
accctgcctaattccgacacccACCCCAAATAACTGTACTGTGATGAAAA
AAAACTATGTCTACAAACATTCCCTttcaagttgaacaataaactattgg
taatgcaagaactctcgaaacaaaacgtCTAacatgactataatgtcaag
atgtcaattagaTCAAAAACGAGATTCGGCTAATGCTTCGGAGCGCGTAG
CGCATAGCATAGGGTTAACCCCTCACCCGGCCGGCAGTGCACACGTGTGG
TGGCTTCTTTGGATTAATGGTgatcataacagttagcctaactcgtcagt
caGACTTATTTATATATAGTACTAAGACCTTTGTATAAGTAACCCCCAAT
AACGATTTTTCGGCAGCCGGCTGGCCTAGTGGATAGGGTGCGCAATCGTC
AGGATTTTTTgagcggaacgaggaagaatttacaaaaatgaacttcaatg
cattagtacttatatacctttaaatcatccaaatctgttcattctttttt
tttaatcaattaggaattatcagggaaacaagtaaaaaaaactgcatcca
ggtatctattttctttccaaagatattcatgtttttcgacgtcaaggtga
aaacgcgatttagcgctgaccacgacaccggaaaattctccacccacatt
gaaacaaatggctgtcgctattgagctcgttcatcttttcaatcgcggtt
tttttagtaaacccagggtaagattaggctacaatctatcacaaagtgct
ttatttgaaaatctattacaggccgtctggaatttcgaaaaataagaaga
aattgcaatttttaacaagattgcggattttttcatttaagcaccataca
ccatctgaaacctgaggatttcagctttctagtgatgaaatttgttttta
gctatcatttccagctcattagcgataagctaaagtttaacagtcatcgg
gccgattttcagaccgcaccagcaaaactccccacaccccgccacaTGGA
AGACTAGATTCCATCTGCCATTTTTGGCGTGATTTTGGTACTTCCGAAAA
ATTATTTcctgctggcgtggtgtaaggaggcgattctttgaaaaggtgat
tttttttgtgtttcgaaaatggaataactttgggaatacttaaccaattc
taataaatgacccctcatttttctcacaaaggtaaggactttcaaataaa
attagtctggtttctaaaaattgagggggaaattttggcctgtccaccct
agcATTGGTTTCGAAACCTATAGGTTCCCAGTTCGAGACCCCCTTTGGTC
ACtattcaacttgaaaaaaattctaagtccagccggatgcatctgaagct
tTAGCCGAATGTCAAAAGCGTGTATATACGCGTGAGTTGTAataataatt
acctctattctTTATTCTGAATCCGAAAACAAATTCCTGCCCTAACTTTA
GAATGGAAATACGAAGAATAGACATTGTTTTTCGTTTAGCGAATCAAAGA
TTGTATACAACCGGCTTTCGTAGAACACAATGCCAAAGGAATTTTCAATC
ACGCAtttcattatttcttattcggcatttcaaaaatcgaaaatcagaag
gttttcttcttcaatttccgaAGAACATGTTCCAAATCTTCAAACCATAT
TTTTCCGATAGCTTGATCAATCGGTGAACGGGATCTGAAAACAGAATGGA
AAAAGACATCGTCAGTGAAGAATGAGAGGTGATTAAACAAATTATCTGAT
TCACCCCGGGTATATATCCCATTCACCCCGTCTTACTAATATAGTCGAat
gtgcgcaacgcactgggctcaacttcagtggcttcaaattattcataggc
ccaattgaagaaccccagatatttacccaatgaacaagtgtgccaaattt
caaccaaatcgaacaatttttgaagtctccaggctgccccaaaggtttag
cctcgttttggcgaaaaactcgtccccaggccccaaaaatctaaattttc
aaaaaatgaaaaaaaacaccaccagatattcacccaaggaacaagtgcgc
aaaatttcagccagatcgaacaatttttgaagtctccaggctgccccaaa
ggtttagcctcgttttggcgaaaaactcgtccctaggccccaaaaatcta
aattttcaaaaaatgaaaaaaaacaccaccagatattcgcccaaggaaca
agtgcgcaaaatttcagccagatcgaacaatttttgaagtctccaggctg
ccccaaaggtttagcctcgttttggcgaaaaactcgtccctaggccccaa
aaatctaaattttcaaaaaatgaaaaaaaacaccaccagatattcgccca
aggaacaagtgcgcaaaatttcagccagatcgaacaatttttgaagtctc
caggctgccccaaaattttaggctcgttttggcgaaaaactcgtccccag
gccccaaaaatcaaaatttttgaaaaatgaaaaaatcacccccagatatt
cacccaaggaacaagtgtgcaaaatttcagccaaatcgaacaatttttga
agtctccaggctgccccaaagttttgggacatacacacacacagacagac
acacacacattctcagattctagctcaactgaagttgagaaaaactGCAT
TTTATTTAGGTAAAATTCAACATGTTTTTAGTAATTTCAATGTGTAGtta
attaaatttattttaggtAAATGATTGATAAGGATGGTAATCTTTAAATA
CTTTCATGGTCTTGTAAATACACTTGAATATCGGTTAAGTTCTTTCCATT
AAGGGTCCAGGTGCAGCCAGGTGGGGGTTCTGTAAAGTGTTGGCACCTGT
GAGGTATAAAGAAataggagaagtatgctattgtaaccaagaaaatattt
ggactaaaaaaggcctgtaaacttggcaatccNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNgtgtgtgcttataaagaacatttcatttt
ctggcttgaggaaatatcttttcaaaacaaaattgaacggataacgaaat
ggaacataaacttatttcgtggacgaagttttaaAAGGCTAGAAACTTCA
ATACTGgttattagaatgttcagagcaaacttgagttctactaaaaagtc
ttatttcatcgggcgagcttagaatttcttttgatacattttatacctcc
atgctgtGACCAAACCTCAACTTTCACATTTTAAATCAAACTCAAGTCAA
AAAACAGCCAATGACTACAGTGTTTGGAATTCTGACTTAGACTAACTGTA
TCAAGTAGGACAGATTGCACCCAGGGTTTTCAATAAAGACGCTCTGCAAT
TATAAGATTTTTCCTGAATTTTGCTCAAAAAACTTtgttattttactttt
tcatccTTACCGTGGAAAATCTCTCTTATCAACCCTTGTGTACTTTGGAA
GGAATGAAAAACTGATCCTTAAAGTAAGGGCAGCATAAACTATAGGTTAA
CCTTGAATCCCTTTCCTTGGAtaaaaggattagacccattgaaatccagc
caAAGGGGTAGAAACTCAGGTTTTCTGAAAAGATTTAtttaactgttttt
tttttctagaacCTTGAATTTCTTGGTGGCAGTCATAATCAAAAGCAATG
TTGATGGATTGGTTTGTTTCATTTCTCAACCTATTCACAAAGTTTGGACC
AGCCACTCGAAGTTTATCTAAATTCCTACTACATAGTATCACTGGCAAAT
GTGAACTAGAGAGAATCTGTGACAGTGGAAAGTATGATTTTAGACAATGT
CAGGAGATTGAGTATGctttataccattcaaagaaTGAAAATATCCGTAA
AATCTTAGTTTCTGATGCAATGAAAGTTAAGGAGGCAATGCAGACTATTT
TACGTTTCAAGCGAATCATTCCCGAAGAAGGTATTGCTTTCTTGAACACT
ATGCccaaatttttgcgaaaaatagTTAGCTACAATAAATTATTTGGTGA
TGTTGAGGAGTTAAAATTAACGAAATATGATGAAGAAAATACATCACACG
AAGAGATGTTGTATCGTTTGTGGACCCTCTTAAAGGAGGGTGACGACCTC
AAGGAGCGCCATACTAAACGTTGGACTGAGATTGGATTCCAGGGCAAAAA
TCCTGCGACTGATTTTCGTGGTATGGGTATATtatctttgaaaaatatgt
tgtacttgttggaaaataaaaaagacgtTGGCATGAAGATTTATGGACTT
TCTAATCACCCTAATTATGGATTCTTCTTTGCCATTGTTGCTATCAATTT
TACTGGTACCGCGTATGATTTCATGAAGAATGGAAAGCTTAAGGGTTATG
CTTACAATTTAGCTGCCGAGGAATACACACTGGAGgactttcaagagttt
ttctGTGAAATGTTTTTGGAGTTTGCTGAATACTGGGTGATGAGAGAACC
ACCGAATATTATGTCTTTTAATGCTATACGTGATGACTATTTGAAGGAAG
TTCATAAGAGACTGGATACTGGGAACTGGTCTATTGATTAGTTTTtatgt
tttagtttttatggtttgtTAGAATGTTTGCAATGTAAAGCATACTGCAG
CGTCTCTATTTTCAATAATTGATTTAATTAACTTAGtaaggtttttttta
aataaagcaaTAAGATGTTTTTGACATATTTTACAAAGTACCCTTTTGtc
agaattttgaaatataaaaatgaATTGCACTGCATCCTTAAAGCTTTTTC
TGAtagttttttttaggttttctGTTACTTTTTTCGGTTAAATTTGCCCA
TATATGCGTCAATGAGGGATCTATCATATTGTCGTGTTTGTCAATTTatt
caataacttttttttaaattcaacagTATAATATTTATTTTGGGAGCACT
AATATTTTAGGTATTATAAGAATAATTAATTTTGATAAAGTAGATGCGAT
TTTTCCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048514-exon-scaffold_143-1491911889:403761..403801 | TCONS_00048514-exon-scaffold_143-1491911889:403761..403801 | Clytia hemisphaerica | exon |
TCONS_00048514-exon-scaffold_143-1510915933:403761..403801 | TCONS_00048514-exon-scaffold_143-1510915933:403761..403801 | Clytia hemisphaerica | exon |
TCONS_00048514-exon-scaffold_143-1575043694:403761..403801 | TCONS_00048514-exon-scaffold_143-1575043694:403761..403801 | Clytia hemisphaerica | exon |
TCONS_00048514-exon-scaffold_143-1491911889:411470..412819 | TCONS_00048514-exon-scaffold_143-1491911889:411470..412819 | Clytia hemisphaerica | exon |
TCONS_00048514-exon-scaffold_143-1510915933:411470..412819 | TCONS_00048514-exon-scaffold_143-1510915933:411470..412819 | Clytia hemisphaerica | exon |
TCONS_00048514-exon-scaffold_143-1575043694:411470..412819 | TCONS_00048514-exon-scaffold_143-1575043694:411470..412819 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_143 | supercontig | scaffold_143:403761..412819 + |
Blast
BLAST of TCONS_00048514 vs. Swiss-Prot (Human)
Match: ELMD2 (ELMO domain-containing protein 2 OS=Homo sapiens GN=ELMOD2 PE=1 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 4.844e-59 Identity = 110/280 (39.29%), Postives = 161/280 (57.50%), Query Frame = 2
Query: 95 FVSFLNLFTKFGPATRSLSKFLLHSITGKCELERICDSGKYDFRQCQEIEYALYHSKNENIRKILVSDAMKVKEAMQTILRFKRIIPEEGIAFLNTMPKFLRKIVSYNKLFGDVEELKLTKYDEENTSHEEMLYRLWTLLKEGDDLKERHTKRWTEIGFQGKNPATDFRGMGILSLKNMLYLLENKKDVGMKIYGLSNHPNYGFFFAIVAINFTGTAYDFMKNGKLKGYAYNLAAEEYTLEDFQEFFCEMFLEFAEYWVMREPPNIMSFNAIRDDYLKEV 934
F+S F +G R K+LL +TGKCEL+RI D+ ++ IE +L +SKN+ ++K +V + + I++ K I PE+ +F M L +I Y +L+ DVE ++ YD +N HEE+L +LW LL L R +K+W EIGFQG +P TDFRGMGIL L N++Y EN +I SNHP G+ +AIV IN T AY +K+ LK + YNL T+E F +F+C + EF ++W EP +IM FN R+ + +++
Sbjct: 2 FISLWEFF--YGHFFRFWMKWLLRQMTGKCELQRIFDT-YVGAQRTHRIENSLTYSKNKVLQKATHVVQSEVDKYVDDIMKEKNINPEKDASFKICMKMCLLQITGYKQLYLDVESVRKRPYDSDNLQHEELLMKLWNLLMPTKKLNARISKQWAEIGFQGDDPKTDFRGMGILGLINLVYFSENYTSEAHQILSRSNHPKLGYSYAIVGINLTEMAYSLLKSEALKFHLYNLVPGIPTMEHFHQFYCYLVYEFDKFWFEEEPESIMYFNLYREKFHEKI 278
The following BLAST results are available for this feature:
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