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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048508 ID=TCONS_00048508|Name=TCONS_00048508|organism=Clytia hemisphaerica|type=transcript|length=842bp
TATGGTAATGCAAGCTCACATTGAGAATGAATTGCAGTTATTTTCTGTAT
TATATTTACGATATTACATATTGCTTGAAATATTATAGCTCGTTTCAAAT
TAGATTTCCTCTGAATATTCTAGCATTTAAGATAATTAAGGTTCGTAAGA
CTTTTTGAGAATAAACTGGATCAGTGATCAGGGTAATAATGATTATGCTT
AAAgaaaaacacaccaaaatttaaagttgaaatgtgtGTGTTTTACTTAA
TGGTTGTGCTTATTGCGAATGTCGATGCTCAGAGACCGGCGAAGATATTT
CAACATGGCGCCGTCGCTGCTGATGTAACTACTTGCTCTACAATTGGTTC
AAAAATCCTTCAAGAAAACGGAAGTGCTGTAGACAGCTATATTGCAACAG
TGTTCTGTTTAGGTGTATATCATCCTATGTATTCTGGCTTGGGCGGTGGT
GGCGTTGCTCTTGTTTACTCCCGCCAGAAGAGGGCGTATTATTCATATGA
TTATACGGGCAGTGCACCTGCTGGAGTGTTTGATGCTAAACTACCAGAGA
TTTTTAAAGAGAATATCAATAAGTCTTCAAGATACGGACCTTTGGTAATA
CTTGTACCAAGCCAACTCAAAGGATTGTGGGAAATGTGGAAGGATCATGG
TCGGTTACCATGGCAACGACTAATTCAACCAATCATAGACTTTGCAGAGC
GAAACGAAATACAGATCGATGAGCAAATGATAAATTCTGTAAAAGTGGTT
AAGTATCAATCAAGAACGTCTTATAACGATGATAATTTAGTGTCTTTCTT
ACAAGATGAGAATCACAGGTGGTTAGACAAAGGGTCGATTAT Run BLAST on NCBI transcript from alignment at scaffold_143:365078..366591+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048508 ID=TCONS_00048508|Name=TCONS_00048508|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at scaffold_143:365078..366591+ (Clytia hemisphaerica)
TATGGTAATGCAAGCTCACATTGAGAATGAATTGCAGTTATTTTCTGTAT
TATATTTACGATATTACATATTGCTTGAAATATTATAGCTCGTTTCAAAT
TAGATTTCCTCTGAATATTCTAGCATTTAAGATAATTAAGGTTCGTAAGA
CTTTTTGAGAATAAACTGGATCAGTGATCAGGGTAATAATGATTATGCTT
AAAgaaaaacacaccaaaatttaaagttgaaatgtgtGTGTTTTACTTAA
TGGTTGTGCTTATTGCGAATGTCGATGCTCAGAGACCGGCGAAGATATTT
CAACATGGCGCCGTCGCTGCTGATGTAACTACTTGCTCTACAATTGGTTC
AAAAATCCTTCAAGAAAACGGAAGTGCTGTAGACAGCTATATTGCAACAG
TGTTCTGTTTAGGTGTATATCATCCTATGTATTCTGGCTTGGGCGGTGGT
GGCGTTGCTCTTGTTTACTCCCGCCAGAAGAGGGCGTATTATTCATATGA
TTATACGGGCAGTGCACCTGCTGGAGTGTTTGATGCTAAACTACCAGAGA
TTTTTAAAGAGAATATCAATAAGTCTTCAAGATACGGTAAGACATTGGAT
TGGATTTTTGGCAATCCGATTttctattagcagattcatgtaaaaaagtc
gcGAAAAAACGCCATGTGAAGTTCTGATTGGCTGAACATTGCACACATCA
GCAAATTTTGTATGAGGTAACCTAAACTTGTACGATTAATTTGTGGGTTT
TCGCCTCTGATTTTTGTTCATTAGGACCTTTGGTAATACTTGTACCAAGC
CAACTCAAAGGATTGTGGGAAATGTGGAAGGATCATGGTCGGTTACCATG
GCAACGACTAATTCAACCAATCATAGACTTTGCAGAGCGAAACGAAATAC
AGATCGATGAGCAAATGATAAATTCTGTAAAAGTGGTTAAGTATCAATCA
AGAACGTCTTATAACGATGATAATTTAGTGTAAGTAAAACTCTTACAAAA
GCCTCTTAAATGGGGCTTCCGCAATTCCAACAATTTTTCCCCAATTTACG
TCGAACCGTCCAAAAAAGAACCGAAATTCCGCCAACGAAAatgcctttgt
tttgaaattaaagatTTCAGTCGAAAATTCCgagaattttgaatattttt
tgccaattccGAAATTTCGTCTAAATTTCCTCAAATTCCGCCACTTCAtt
cgaaaaaagggccgattccgcttcTCCAATAACAATGAACCCCTCTTAAA
TGGCTTTACAATATTTCATTCAGTCAATCTAGTCAAAATGGACATATTTT
CATTGTGCTAAAAATTCACCATTAGAAGTTATTTTGTCAGATTCGCCAGG
CTTAACTACTTACTATTGATAGATCTCGGTAGATATaaataacttttatt
gataCCAAATACCGTTTTTCTCTGCCGACACCCTCTAATATCAACTTTGA
TTTTCACACGCAGGTCTTTCTTACAAGATGAGAATCACAGGTGGTTAGAC
AAAGGGTCGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048508-exon-scaffold_143-1491911889:365078..365663 | TCONS_00048508-exon-scaffold_143-1491911889:365078..365663 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1510915933:365078..365663 | TCONS_00048508-exon-scaffold_143-1510915933:365078..365663 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1575043694:365078..365663 | TCONS_00048508-exon-scaffold_143-1575043694:365078..365663 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1491911889:365852..366056 | TCONS_00048508-exon-scaffold_143-1491911889:365852..366056 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1510915933:365852..366056 | TCONS_00048508-exon-scaffold_143-1510915933:365852..366056 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1575043694:365852..366056 | TCONS_00048508-exon-scaffold_143-1575043694:365852..366056 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1491911889:366541..366591 | TCONS_00048508-exon-scaffold_143-1491911889:366541..366591 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1510915933:366541..366591 | TCONS_00048508-exon-scaffold_143-1510915933:366541..366591 | Clytia hemisphaerica | exon |
| TCONS_00048508-exon-scaffold_143-1575043694:366541..366591 | TCONS_00048508-exon-scaffold_143-1575043694:366541..366591 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:365078..366591 + |
Blast
BLAST of TCONS_00048508 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2) HSP 1 Score: 86.2705 bits (212), Expect = 7.828e-19 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 295 IFQHGAVAADVTTCSTIGSKILQENGSAVDSYIATVFCLGVYHPMYSGLGGGGVALVYSRQKRAYYSYDYTGSAPAGVFDAKLPEIFKENINKSSRYGPLVILVPSQLKGLWEMWKDHGRLPWQRLIQPIIDFAER 702
++ AVAAD CS IG L++ GSAVD+ IA + C+G+ + G+GGG +Y+ R + AP F N ++ S+ G L + VP +++G + HGRLPW RL QP I A +
Sbjct: 37 VYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMF------NSSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQ 166
The following BLAST results are available for this feature:
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