TCONS_00048508 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048508
Unique NameTCONS_00048508
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length842

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048508 ID=TCONS_00048508|Name=TCONS_00048508|organism=Clytia hemisphaerica|type=transcript|length=842bp
TATGGTAATGCAAGCTCACATTGAGAATGAATTGCAGTTATTTTCTGTAT
TATATTTACGATATTACATATTGCTTGAAATATTATAGCTCGTTTCAAAT
TAGATTTCCTCTGAATATTCTAGCATTTAAGATAATTAAGGTTCGTAAGA
CTTTTTGAGAATAAACTGGATCAGTGATCAGGGTAATAATGATTATGCTT
AAAgaaaaacacaccaaaatttaaagttgaaatgtgtGTGTTTTACTTAA
TGGTTGTGCTTATTGCGAATGTCGATGCTCAGAGACCGGCGAAGATATTT
CAACATGGCGCCGTCGCTGCTGATGTAACTACTTGCTCTACAATTGGTTC
AAAAATCCTTCAAGAAAACGGAAGTGCTGTAGACAGCTATATTGCAACAG
TGTTCTGTTTAGGTGTATATCATCCTATGTATTCTGGCTTGGGCGGTGGT
GGCGTTGCTCTTGTTTACTCCCGCCAGAAGAGGGCGTATTATTCATATGA
TTATACGGGCAGTGCACCTGCTGGAGTGTTTGATGCTAAACTACCAGAGA
TTTTTAAAGAGAATATCAATAAGTCTTCAAGATACGGACCTTTGGTAATA
CTTGTACCAAGCCAACTCAAAGGATTGTGGGAAATGTGGAAGGATCATGG
TCGGTTACCATGGCAACGACTAATTCAACCAATCATAGACTTTGCAGAGC
GAAACGAAATACAGATCGATGAGCAAATGATAAATTCTGTAAAAGTGGTT
AAGTATCAATCAAGAACGTCTTATAACGATGATAATTTAGTGTCTTTCTT
ACAAGATGAGAATCACAGGTGGTTAGACAAAGGGTCGATTAT
Run BLAST on NCBI

transcript from alignment at scaffold_143:365078..366591+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048508 ID=TCONS_00048508|Name=TCONS_00048508|organism=Clytia hemisphaerica|type=transcript|length=1514bp|location=Sequence derived from alignment at scaffold_143:365078..366591+ (Clytia hemisphaerica)
TATGGTAATGCAAGCTCACATTGAGAATGAATTGCAGTTATTTTCTGTAT TATATTTACGATATTACATATTGCTTGAAATATTATAGCTCGTTTCAAAT TAGATTTCCTCTGAATATTCTAGCATTTAAGATAATTAAGGTTCGTAAGA CTTTTTGAGAATAAACTGGATCAGTGATCAGGGTAATAATGATTATGCTT AAAgaaaaacacaccaaaatttaaagttgaaatgtgtGTGTTTTACTTAA TGGTTGTGCTTATTGCGAATGTCGATGCTCAGAGACCGGCGAAGATATTT CAACATGGCGCCGTCGCTGCTGATGTAACTACTTGCTCTACAATTGGTTC AAAAATCCTTCAAGAAAACGGAAGTGCTGTAGACAGCTATATTGCAACAG TGTTCTGTTTAGGTGTATATCATCCTATGTATTCTGGCTTGGGCGGTGGT GGCGTTGCTCTTGTTTACTCCCGCCAGAAGAGGGCGTATTATTCATATGA TTATACGGGCAGTGCACCTGCTGGAGTGTTTGATGCTAAACTACCAGAGA TTTTTAAAGAGAATATCAATAAGTCTTCAAGATACGGTAAGACATTGGAT TGGATTTTTGGCAATCCGATTttctattagcagattcatgtaaaaaagtc gcGAAAAAACGCCATGTGAAGTTCTGATTGGCTGAACATTGCACACATCA GCAAATTTTGTATGAGGTAACCTAAACTTGTACGATTAATTTGTGGGTTT TCGCCTCTGATTTTTGTTCATTAGGACCTTTGGTAATACTTGTACCAAGC CAACTCAAAGGATTGTGGGAAATGTGGAAGGATCATGGTCGGTTACCATG GCAACGACTAATTCAACCAATCATAGACTTTGCAGAGCGAAACGAAATAC AGATCGATGAGCAAATGATAAATTCTGTAAAAGTGGTTAAGTATCAATCA AGAACGTCTTATAACGATGATAATTTAGTGTAAGTAAAACTCTTACAAAA GCCTCTTAAATGGGGCTTCCGCAATTCCAACAATTTTTCCCCAATTTACG TCGAACCGTCCAAAAAAGAACCGAAATTCCGCCAACGAAAatgcctttgt tttgaaattaaagatTTCAGTCGAAAATTCCgagaattttgaatattttt tgccaattccGAAATTTCGTCTAAATTTCCTCAAATTCCGCCACTTCAtt cgaaaaaagggccgattccgcttcTCCAATAACAATGAACCCCTCTTAAA TGGCTTTACAATATTTCATTCAGTCAATCTAGTCAAAATGGACATATTTT CATTGTGCTAAAAATTCACCATTAGAAGTTATTTTGTCAGATTCGCCAGG CTTAACTACTTACTATTGATAGATCTCGGTAGATATaaataacttttatt gataCCAAATACCGTTTTTCTCTGCCGACACCCTCTAATATCAACTTTGA TTTTCACACGCAGGTCTTTCTTACAAGATGAGAATCACAGGTGGTTAGAC AAAGGGTCGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030852XLOC_030852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048508-exon-scaffold_143-1491911889:365078..365663TCONS_00048508-exon-scaffold_143-1491911889:365078..365663Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1510915933:365078..365663TCONS_00048508-exon-scaffold_143-1510915933:365078..365663Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1575043694:365078..365663TCONS_00048508-exon-scaffold_143-1575043694:365078..365663Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1491911889:365852..366056TCONS_00048508-exon-scaffold_143-1491911889:365852..366056Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1510915933:365852..366056TCONS_00048508-exon-scaffold_143-1510915933:365852..366056Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1575043694:365852..366056TCONS_00048508-exon-scaffold_143-1575043694:365852..366056Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1491911889:366541..366591TCONS_00048508-exon-scaffold_143-1491911889:366541..366591Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1510915933:366541..366591TCONS_00048508-exon-scaffold_143-1510915933:366541..366591Clytia hemisphaericaexon
TCONS_00048508-exon-scaffold_143-1575043694:366541..366591TCONS_00048508-exon-scaffold_143-1575043694:366541..366591Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:365078..366591 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0.0276886 0 0 0.0284869 0 0 0.199251 0 0 0.0777867 5.95624e-08 2.25393 0.19796 0.0871996 0 0 0 0 0 0 0 0.0122179 0.120041 0 0
Blast
BLAST of TCONS_00048508 vs. Swiss-Prot (Human)
Match: GGT1 (Glutathione hydrolase 1 proenzyme OS=Homo sapiens GN=GGT1 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 7.828e-19
Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query:  295 IFQHGAVAADVTTCSTIGSKILQENGSAVDSYIATVFCLGVYHPMYSGLGGGGVALVYSRQKRAYYSYDYTGSAPAGVFDAKLPEIFKENINKSSRYGPLVILVPSQLKGLWEMWKDHGRLPWQRLIQPIIDFAER 702
            ++   AVAAD   CS IG   L++ GSAVD+ IA + C+G+ +    G+GGG    +Y+   R     +    AP   F          N ++ S+ G L + VP +++G     + HGRLPW RL QP I  A +
Sbjct:   37 VYTRAAVAADAKQCSKIGRDALRDGGSAVDAAIAALLCVGLMNAHSMGIGGGLFLTIYNSTTRKAEVINAREVAPRLAFATMF------NSSEQSQKGGLSVAVPGEIRGYELAHQRHGRLPWARLFQPSIQLARQ 166          
The following BLAST results are available for this feature:
BLAST of TCONS_00048508 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GGT17.828e-1934.56Glutathione hydrolase 1 proenzyme OS=Homo sapiens ... [more]
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