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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048507 ID=TCONS_00048507|Name=TCONS_00048507|organism=Clytia hemisphaerica|type=transcript|length=841bp
ACAATCGGAAGGTCTCGACCACTGAAAATTTGCACCACCAAGAGAGCAAC
AAAGACAAAGACACAACCATGCCTTCATCAATGGAAGAAATTCGAGATCC
ATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAACTGCACTTTTCG
TTATGAATGTTACGACCGTCGCAACATTGTCAGCCGGATTCCAAACCGAG
AAAATTATCGTTATTTCCCTCGCTATCGGTATGTCAGTGTCGATTCTGGC
GCAGATTTTCGGACCAGTCTGTGGTGCCCATTTAAATCCAGCTGTTACTG
TTGCACTGTTTGCCAAAGGAGCAATTACCTTCGCAAGAACTTGCTTTTAT
TTCATAATCCAACTGATAGGAGCTATCGTTGGTTCAGCTATCACATACGG
GCTCATCCCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCAC
CAGGTGTCACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTT
TTGTTGTGTTTGACCGTCTTCTCTTCCACCTCAACTGATCATGGACGAAA
AGATTTTGGATTCTCAAATGCATTTGCTATTGGAATGTCAGTGACTGTCT
CTCATTTGCTTGGGGTACCAATGACAGGATCAGGCATCAATCCAGCACGT
GCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCACTGGCT
GTATTGGATTGGACCGCTAGTTGGAGGTGTTTTCTCCGGCCTTTTCTACA
GATTCGTGTTATCTGTCGAACCACCAAGTCAAGAAACCAAAGACATCAAC
CTCAAAACTGTTTCTGCCGCATAAGGAGCCATATAGGATGT Run BLAST on NCBI protein sequence of TCONS_00048507-protein >TCONS_00048507-protein ID=TCONS_00048507-protein|Name=TCONS_00048507-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
NRKVSTTENLHHQESNKDKDTTMPSSMEEIRDPFFWKAVFAEFFATALFV
MNVTTVATLSAGFQTEKIIVISLAIGMSVSILAQIFGPVCGAHLNPAVTV
ALFAKGAITFARTCFYFIIQLIGAIVGSAITYGLIPEEQHGALGALQPSP
GVTQAQAFFVEMLLTVLLCLTVFSSTSTDHGRKDFGFSNAFAIGMSVTVS
HLLGVPMTGSGINPARALGPSVVTATFHESHWLYWIGPLVGGVFSGLFYR
FVLSVEPPSQETKDINLKTVSAA Run BLAST on NCBI transcript from alignment at scaffold_143:337912..347482+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048507 ID=TCONS_00048507|Name=TCONS_00048507|organism=Clytia hemisphaerica|type=transcript|length=9571bp|location=Sequence derived from alignment at scaffold_143:337912..347482+ (Clytia hemisphaerica)
ACAATCGGAAGGTCTCGACCACTGAAAATTTGTaagttttattttcactt
ttttttaactATAAGCTTTCTTTCATACAATAGATGGCCCAGGAAAAGAA
CTCAATCAGTGATATATCAACTTTGGCTATACGcgttttttataacaaca
aactACTGTATgtaaagaacataaggcttcgatggccaaattattaagaa
catgtaagaacattttaaggctttgtagaccgaacactcaatttcttagg
aaaatggacaaaaatgctcacaaaatggtgataCTATGCTGATATGagcg
aaaaaatgtttttcttttcctctttctgaccaatcttgctccacatacgt
gtcaatctaatgtgaaaaagcttgtgaattaaaattgatgagtaagcaaa
cgatatcactcttatttgaaaacaaaacatttgTAATTGAACAGTAAAGT
TGCTTGTAATTTTACTATGTAATTACTCAGTCAGTGACTTTTAAACATGA
CGAAGCATCATCCGCAAAtgtaattttctcaaattttaattttctcaaAC
GTTACCCGAGTAACAAGATATTTTGATGTCTCTAACCTGTCTATACATTG
GAAAAAAATGCGGTCTTCGTCATGAAATTTTAATGGAAAGCTttgtaaat
tttaaattaaacTCTAGAACAACCAAAAGAAATTATCACAATAAGACTAA
GTAAAGTCAAGGATAAAGTCATTTCTCGTAGGCTTCAAGCTGgttttttt
ctttcgaaaattgatttttgacaatcagaaaattttttattcgtACTATT
TTTTacagttttaaaaatattttcttcaagttACTCTTCTACGAAATTGG
ATGCTGAATCTGCTAAGACTTAAAATGAAGAGGATTGAAGAAACTTGAAA
AGTTGAATATCGAAATACAGACATGCTTGttagaaaacagaaaatatctT
CTGTTAGAGTACTGTAAGTAATAGTTCTTAGTGCTTTAATACTGGATGGT
CCAGTTGCAAGGGGGTGTGCTCGGTTTAAAACAACCTTGAGTGTGTTCAA
AAATTAGTCTCAAGATTGAACACTTACAGTATACAAAGAATTTTTCGTAG
AGTTAgtgcaaatttgggctaaaGATCCTCCACTGTGCTTGACCTccttg
aaaaatagaaaaatagggGATTGAAATGGAGGGAGATTAACTCAGATTTC
AGATTTAGTTTTGAAAATGTCATTCGGTTATTCCAGAGGAATAGTTATTC
CACAACTCCTGCATCTATAGGGGCGGTTCAATCTCCAATCGTGGAAGACA
TTTTCTCGGTATGGCCCCATTTATTCCGTTATCggcttgataaaaaaaaa
ttagtactATATGACtttatttgtcaatttttcgaGATTGTTCTGAAATA
ATCTGCAGGTTTTGGTTGGGTCGATAGTTTTCCCGACAATTTGTGTTGTT
AATTCACGCAATGCACGATCAAGTGAAttcagggtcggatacaggaggta
ggctatattattcatggagagtaattagtttccatataaggtaatacgat
aataaagtgcactctgctccattggttatagcctNttccatataaggtaa
tacgataataaagtgcactctcctccattggttatagcctccctctgtat
ccgagcctggaATTCGTTTCTAAAAGATGCATTGTAAGAATGCATGACAA
AGCAATGAAACAAATCAAGGGCGTAATTgttcgaaaaattttcaaaaaca
ataaatcAAAAGTCAGCAGCAAAATATAttcgctttttataagaatctgt
AATGTTGACAAGACTATTCTGAGACTTTTCTTAGAGTAGCGTAAGTTATT
TTAGGTTTTCATTAATTTAGCCCTTAACTCGCTCAAAATTTAACCTCAga
cattttcaagcaattttgaACCTCGATgtattcttattttaaaaaattgt
cCTTATGAAGAATGTAATGTGATCAATCGAAAAACGCCACAAGAAGGCTG
CGAGTTTATTAGTTTCCGTTTGCCAAAATTCGGCATTTGTGAAATGTTCA
CTTACCGTATCTTAagtgatacacgttttttataagaataaactatataa
gaacataaggcttcgatggccaaaatgttaagaacatggttaagaacatt
tcaaggctttgttGACTCTGAAACActgaatttcttaggaaaatagacaa
aaatactcaaaaatggtgaaaataagaacatcaagaacatttttaggctt
aaaactcaaaaagttaagaacatctcttcaaaaattttggatgttcttat
aaaaaaacgtgtaacccaTTACAAAATGAATTTGCATTATTTTGCGAAAG
ACATCACCCCAGTTTAGTAGTATTTAGCGGTTTTTGTCAATTAAAAAGTA
ATTCTAATTTGCTTTAATTGTTATCATTAAAACAATACACCGGTGCGGAG
AGGATAATATTTTAGGAATATTCCATCTATGGAAACAAATACCCTCCATC
GCGATTTTTAAAACTCCCTCAAATCCGCTACTGATTATAAATATCACAAA
AAGTAttgtgaaatttttgaaaggtgATCATGCTAAAATATATCTAAGTG
ATGTTAAGTCATACttaacaattatttttgaaaattttgaaattttataa
atataGTACAAAATTGCATCACTAGAGTACAGTAGAGCCCTTTACTTTAC
CCTGGAATTTCTTTCGTAAACTTTCTTTATGATACCGTCGCTATGGGTAA
GATCCCACTTTCCGGTCTAAGATTCCATTGACTTTTCCGGAAAATTTCCG
TAATATGTCTCGAGACCGGTATTAGATTAGGACGGGTTTTTTTCTTAAGG
GACGGAAAATATTGTGTTAACTTTGGAAACTACCTTAAACCGGAGTGCTA
GTGTAGGTAGTGGAATCGTGTCTTACCAAAAACGACAGAAATGTAAAATA
TAGATATTTTTACTTGGGATGGACAGAACATATGGGACCTCAGACTATGA
TATTTAGGGCCCTTCGAGTGAATTTCTGCTACCCTTTCCCCAGgataaaa
aataatctttatcCTAAAGAATATAAAACTAAAATAATATCCGCtattta
ttcagttttaaagtttgaaatttcatgaaaatgacACTTGGCATTTTATA
TAACTAAACCAAGCAAACTCAattgaaatgtttgaaaatattttatcaag
TACTGATTCAACTGAATTCACTTTAGCCTACTTTTTCATATTGTTCATTT
GAAAAAACTGCTACGtactgaaaaattatgaaacttATAAAAACGATCAA
ATACTTTAAACTTCTCACtgaaaagaattttcttcgaaataAATTTATGG
TTATCTGTCCTACATTTGATTGAAAACATTATCTGGCAAGGAGTTTCAGc
tgaataatttttcttaatattttttaatgtatGTCTCGTGTCTTCGTGTC
TTGCTTAGCTTGCCATATTCAACCAATGCTTCAGTCCTAACAAATAATGT
ATCATTGAAACNTGTATGGCTCGTGCCATATTCAACCAATGCTTCAGTCC
TAACAAATAATgtatcgttgaaaagataattcagagctTGACTGTATCAT
TTTATGTCATATCGAAAACTACGTCCTCTGGTTTAAAAGGTCGTTCGTCT
AAGTGAAAAACAGTAAAACGGGGCCTTGAATTTTCATCGGCATATTATAT
GTTGAAATCGGTTGCGAATCGCGAACCAAACAAGAATCGATGTACAATGG
ATTACCGATATGCATCAATGCTCTCCTACAGAATGGCTTAAAGTTAAAGT
GGTTTGACGTATTCCCAGTAACGAAATATAAGAATACTAATGGAACCTCA
TCATTCTGAAAGAATTGAGGATTCCCAGCTGCAAGGACGAATAATCGCAA
TGTAGGGATGGCGTTGATGATATCGTGCACCCATCAAGCATCGTAAGCAA
AAATAATTAACCAATTAACCCACGCAAGCAAAATCATTATTATAGAGCTC
TTTATAAGCTATTATGGGCGTATCAAAAGGTATAAAATTCGTCAACGACa
attttaatttgtaatttttcaatttcaagcttaCAAATTTTATGTACGCA
TTAATATCACTTCCAATGTATTATACATTTTTGTATTGAACTTATGGCAC
GCAGTTAACCGAATGAGGTTTTCTTTTCAACTACACGTTTTAGAACAtag
aggctgaaattcgtcgaaatattgagaacatcgtaagaacatgcccagcc
tcagtttggagaAAAATGACGAGAAACTACAATTTtctcctcttttcaag
cagttttaaccgaacttagggctggattttctaaaatcgagagtcaaata
ttgtccaaattttacattttaccaattttaagtgctctttattttgcatt
atattgtcgatttagagtagtctgaaaaattaagaacgcatctaagaaca
ttttaggctgaagattgctaaaaaaataagcacatccaggctcagccaaa
ttttaggtgttctaataaaaaaacgtgttgtTGTCGGAGGTCTTTCCGTT
TAAAAATAGTAGAATTGCCTTTTTCCTTGAAATAGGAAAAATAAAGAGTG
TCCAATCAAGTCCATGCCAAATTCCGCGTAACCACTCTCAATTTATTCGT
CTAAATTGGGTTGGAATTGCAACCTTCTGTGCCAAAAGACTTGACCTGTA
TGTGTAAGGAATATATACAGTAACaggttttgaaaatgaagtctGCATTT
AATTATCCCGTTATAATTCTCGATTGAGTACTTGCAATCGAGGCCAAAAT
TGTTGACTAGGTTGCAGTTTTTAAATGATTTGTCTCGAAGCAATGAAACC
TTTGGATCATCAATGAATTTGATAGGAACCAAGAATTAAGGAACTCAAAT
ATCATAGTTTCTTCATAGTTTTATACAGGTTTTACCGATAGGATTACCAT
TACCATGGTAACGCAGAAACAACACTTTAAGCACCATTTCTAATCTGTAA
CACCCTTAAGTGAATCCTGCCCAAAGACTCTAAACTATTTTGTTTATCTC
GTGAACGAGTTTTCAATTACGCAAAACGACATCCGCATTTGCCGACGACT
GGCGACAAATTTTCGTTCAGCAACGAGTATTACGTCATAAACGAAGATTA
CTCGTTGTTgccatcagattttgaaatcCGATACAACACAACTATGTGGA
AATCTAGATTATGACATAAGACAAAATACATAGTACAATATAAGGTTATA
AGAATATTGACTTGAATACACCATACATAGTTAAAcatcaaaacttaaaa
ttttcacaaatattCCAAATAAAATATAGTAGCGCTTTTTATATTCTGAA
GTGATTATCATTTTTCCAATCTTCAATCTTTGGGTGTTGAAATTTTCCAC
TTCAATCTTTTCTTaagtaaactttttttcttataagaaaaaaatgttta
aagtcatgtgatttccaaatttttcgTTTTCAATATTCATCATAATTCCT
TTGTCTTTCCTACAGTTACAAAAGAGTAAGGTCATGATGCCATGCTgttt
ttttagccaatcagagtCGATCAATCTATCCAGTCAGCCAATCAAAAAtc
ttgattctaaaaaaaaaaggaaattgttaaggaacttgtATCAGCAAATG
ACTATGCTTTGTACCTGTCGCTAGCCTTTAATTGTTTTACACATTTAATG
AGTTTCCTAACCGATTAAAAAGAGATCCAGGCTAAATAAATTCTTTAAGT
GTGTTTTGCGTTCGCATTATAAATTGAGGTGAAAAAGTCTTAGTTCTTCA
GTTGAGCGTTTGTAAGCAGGATAGCATTAACCATAAAGAATCTCAGATTT
TGCAAGGAGGCTACAAAGCGACGTTTTTTGGAAATACTTGGAAGATTTCA
ACGTTAGAATTCAAACCAAATCGCTTCAATCTATATTTACAGGCACCACC
AAGAGAGCAACAAAGACAAAGACACAACCATGCCTTCATCAATGGAAGAA
ATTCGAGATCCATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAAC
TGCACTTTTCGTTATGAATGTTACGACCGTCGCAACATTGTCAGCCGGAT
TCCAAACCGAGAAAATTATCGTTATTTCCCTCGCTATCGGTATGTCAGTG
TCGATTCTGGCGCAGATTTTCGGACCAGTCTGTGGTGCCCATTTAAATCC
AGCTGTTACTGTTGCACTGTTTGCCAAAGGAGCAATTACCTTCGCAAGAA
CTTGCTTTTATTTCATAATCCAACTGATAGGAGGTGAGATTGATTAAATT
ATTAAAACTTTGAGATTgaaccggtctgtaaaataccaaagtTTGAATGA
TGTAAGAAAAATACTAAGTCCCTTCAAAAAAGGTCTTCTATATAGGTATC
ACGTGATTTATGAGCAAAATAgtagaaaattgaaaacaatgtTGTGACCC
TATAACTGAATGCTAGAGTCGAATTTCATGCGTAGGATTTGAAGGCACTT
ATTTCCTACATAAGTTGCTCAGACCACATGgttttcatgcaaaaagaaag
tatgctagattcaatccgtaaTCCAAAAGGCGGCGTAAATCTCCTATAGA
TTTTCTATGAAAACTGGATtgaattccactttttcatgcTTGGAAGAGGT
TGAGCCTCTAGCCTTCAACTTAAAACTCAACGATGACGCAAAGTTTTCCC
AGATGACGATAATGTCCACTTTTTTACACCAACtaggaaattttcatttc
aatttttcataccaTTTGATAAACAAAGTTTCTCCTTTGATTTCTTAGCT
ATCGTTGGTTCAGCTATCACATACGGGCTCATCCCTGAAGAGCAGCATGG
AGCATTGGGTGCCCTCCAACNTTGGTTCAGCTATCACATACGGGCTCATC
CCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCACCAGGTGT
CACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTTTTGTTGT
GTTTGACCGTCTTCTCTTCCACCTCAACTGATCATGGACGAAAAGATTTT
GGATTCTCAAATGCATTTGCTATTGGAATGTCAGTGACTGTCTCTCATTT
GCTTGGGGTAAGTTTTATTTTGAGGACATTTTGATGCCAAGGGATCGTGC
ATTTTTACAGTTCAATGAAGGCGACTGACTTAGGGAAAATACTCAGTGCT
CAGTTGAAAAACCCTGTTGACTGGTGCAATACCCTAATTGAGATATAAAA
TATATCCTCAAAATGCTTCGTAACCAACACGCATGTGAAAATTTTCCAAG
CTCAcctaaactaaaaaaaataaagtacaaACTGTATACCGTAGCTTGTT
CAATTACCTCAAAGGTAGATATCCTGTGCGTGTGCGGTCCACGCCAATCC
ATTTAGTTGTGATCCTAGGATAAGATATTctgatttcagaaaaatttaat
ctAATGCTAAGAATAACACCATCATGGGATTTGGCAACTGAATCTAAGAA
TGccaatttttagagcattttagggtaattgccaattacccctcAGTAAC
ACTGAaagctttcacaaaaatgccaaaacttTAATCTTAGATAATTCAAA
TGGAAAATTGTGGGGAGATAGTCTCATAGGAGTGATTTTGGATCACTCTC
CATTTGTATGCTCAAAAATAGTGTTACTTAGTGAACCATTTTAATATTCA
ACTTATGCTCACGAATGCCTAGCTTAAAATTTTAAGAGGCTcgttaaaaa
aaagttaaagttaaaTATGTTGGacctttattttttgaagaaaaggtGAC
CGGTAACTGTATAATTAAATTGTACTTAATTGTTTTTAAGTACATGATTT
GTAGGGCCCACGCCATGGGTGGGAGGGATGGAGGGGAAGctctctttttt
tcaaataaaaatctattttaaaatatCACAATTCACACTTTTAACATTCA
TTTTTAACATTCATTTCTAAGCAAAATCAGTTTGAAATAGGGCCATTTTA
AGCTTTATTAGGAGATAAGACCGAAATTTTAGCCTAAAGCAGCTTTTTTC
GGAAGTCTTTCGAGGGTAATTTCACTCATGCGTCAGCACATACCCAAGCT
CCATCTTTTTCGCCTAAGCACGTTCGGCAAATATTTCATATAAAGCTGGA
agtcaaattttttaattaaaaatatattttctaaaCGGGTTTTTGATTAC
TGCTAATAACGTTTTAACAGCGGAAGAAAAAACTGCAAAGATTCTTTCCT
GAAAAACTCAATCTTCCTTTCCTAAATGAAAGTTCCTGAAAAGAAATTGT
AACAACTTCTCTGAAAATGAGACAAGAAATAAGGATATTTTGAAAGAGTA
ATTAACGACTTAATGAGTGCATACCGCTTCTAATTACTCCGAGATGATTC
AGCTAATTTGTGAAGTGATGGGATAGCTTCCTGGTCTAtaattggttcaa
tgtatcTTGATCTCAATAAGACCATGATGCGAACTGctaattgaaaatgt
tttgtaaaaacaaaacaacaacagcGCTTTTTGGACTCAACCTCCTGATG
AAAAAAAACGAATCCGACAAGACTTTGGCAGGGTTAAACTCCAAGGAGTC
TTCCAAAAGATTCAGGGTCCCATATCGACCAACATGTCAATCATTGGTGA
CTTCCTCGTAACTCTGCCTTCGGTAGCACGTCCCACCCTACGTTGAAAAT
ATAACAGTTACTTATTTTTCTATCATAAAGTAAGCCTTCTAACCAACGTG
TATAGAGAACAAAGAAACGATACTACCTaatctaatacaccttttcgacc
gtagccgccaattaccgTGCGGGCATTTTTCTTGTCCATTTTACCACCCT
TAAGctgtcccagtctttttttcgcacctatagacaataggaaaaagtgt
aaaaaaggatttgaTCGAATTTAGGGCGCGATAATttaataataaagtgg
cacgcgcctgaccaaCTACGCGAATACAGTCGAAAATAAGATGTACAGTC
GATTCTTTCGTGCTTTATTCTTAATAGAGCAAAATATTCTCAAAGTTGGT
TTGTTTCTTTTCCAACAGGTACCAATGACAGGATCAGGCATCAATCCAGC
ACGTGCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCACT
GGGTAAGTTGTTGTAAAGGAATTGTTTATTgatcaaatttcatttgtctg
tTCTCAGAAACCATTCGAACTTAACTTCGATAGAATTAAATTATCTACtg
taagggaactaattttgatgagcagcaaaaatcctgaaagtttttaattt
ttaattttggtgggaactaattttggcgaaatttGTCTAAATTTGCGGAA
TtctccaaaattagttcctttaAGGTAGCAACAAAATTTAGAGTTCAAAA
TGTCATTATTGTTTCCTTTCAATCTCAGCTGTATTGGATTGGACCGCTAG
TTGGAGGTGTTTTCTCCGGCCTTTTCTACAGATTCGTGTTATCTGTCGAA
CCACCAAGTCAAGAAACCAAAGACATCAACCTCAAAACTGTTTCTGCCGC
ATAAGGAGCCATATAGGATGT Coding sequence (CDS) from alignment at scaffold_143:337912..347482+ >TCONS_00048507 ID=TCONS_00048507|Name=TCONS_00048507|organism=Clytia hemisphaerica|type=CDS|length=4932bp|location=Sequence derived from alignment at scaffold_143:337912..347482+ (Clytia hemisphaerica)
AATCGGAAGGTCTCGACCACTGAAAATTTGCACCACCAAGAGAGCAACAA
AGACAAAGACACAACCATGCCTTCATCAATGGAAGAAATTCGAGATCCAT
TTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAACTGCACTTTTCGTT
ATGAATGTTACGACCGTCGCAACATTGTCAGCCGGATTCCAAACCGAGAA
AATTATCGTTATTTCCCTCGCTATCGGTATGTCAGTGTCGATTCTGGCGC
AGATTTTCGGACCAGTCTGTGGTGCCCATTTAAATCCAGCTGTTACTGTT
GCACTGTTTGCCAAAGGAGCAATTACCTTCGCAAGAACTTGCTTTTATTT
CATAATCCAACTGATAGGAGCTATCGTTGGTTCAGCTATCACATACGGGC
TCATCCCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCACCA
GGTGTCACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTTTT
GTTGTGTTTGACCGTCTTCTCTTCCACCTCAACTGATCATGGACGAAAAG
ATTTTGGATTCTCAAATGCATTTGCTATTGGAATGTCAGTGACTGTCTCT
CATTTGCTTGGGGTACCAATGACAGGATCAGGCATCAATCCAGCACGTGC
TCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCACTGGCTGT
ATTGGATTGGACCGCTAGTTGGAGGTGTTTTCTCCGGCCTTTTCTACAGA
TTCGTGTTATCTGTCGAACCACCAAGTCAAGAAACCAAAGACATCAACCT
CAAAACTGTTTCTGCCGCATAAAATCGGAAGGTCTCGACCACTGAAAATT
TGCACCACCAAGAGAGCAACAAAGACAAAGACACAACCATGCCTTCATCA
ATGGAAGAAATTCGAGATCCATTTTTCTGGAAAGCCGTATTCGCCGAGTT
TTTCGCAACTGCACTTTTCGTTATGAATGTTACGACCGTCGCAACATTGT
CAGCCGGATTCCAAACCGAGAAAATTATCGTTATTTCCCTCGCTATCGGT
ATGTCAGTGTCGATTCTGGCGCAGATTTTCGGACCAGTCTGTGGTGCCCA
TTTAAATCCAGCTGTTACTGTTGCACTGTTTGCCAAAGGAGCAATTACCT
TCGCAAGAACTTGCTTTTATTTCATAATCCAACTGATAGGAGCTATCGTT
GGTTCAGCTATCACATACGGGCTCATCCCTGAAGAGCAGCATGGTGCATT
GGGTGCCCTCCAACCTTCACCAGGTGTCACTCAAGCACAGGCGTTCTTCG
TTGAGATGTTACTGACTGTTTTGTTGTGTTTGACCGTCTTCTCTTCCACC
TCAACTGATCATGGACGAAAAGATTTTGGATTCTCAAATGCATTTGCTAT
TGGAATGTCAGTGACTGTCTCTCATTTGCTTGGGGTACCAATGACAGGAT
CAGGCATCAATCCAGCACGTGCTCTTGGACCTTCGGTTGTCACTGCTACT
TTCCATGAATCGCACTGGCTGTATTGGATTGGACCGCTAGTTGGAGGTGT
TTTCTCCGGCCTTTTCTACAGATTCGTGTTATCTGTCGAACCACCAAGTC
AAGAAACCAAAGACATCAACCTCAAAACTGTTTCTGCCGCATAAAATCGG
AAGGTCTCGACCACTGAAAATTTGCACCACCAAGAGAGCAACAAAGACAA
AGACACAACCATGCCTTCATCAATGGAAGAAATTCGAGATCCATTTTTCT
GGAAAGCCGTATTCGCCGAGTTTTTCGCAACTGCACTTTTCGTTATGAAT
GTTACGACCGTCGCAACATTGTCAGCCGGATTCCAAACCGAGAAAATTAT
CGTTATTTCCCTCGCTATCGGTATGTCAGTGTCGATTCTGGCGCAGATTT
TCGGACCAGTCTGTGGTGCCCATTTAAATCCAGCTGTTACTGTTGCACTG
TTTGCCAAAGGAGCAATTACCTTCGCAAGAACTTGCTTTTATTTCATAAT
CCAACTGATAGGAGCTATCGTTGGTTCAGCTATCACATACGGGCTCATCC
CTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCACCAGGTGTC
ACTCAAGCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTTTTGTTGTG
TTTGACCGTCTTCTCTTCCACCTCAACTGATCATGGACGAAAAGATTTTG
GATTCTCAAATGCATTTGCTATTGGAATGTCAGTGACTGTCTCTCATTTG
CTTGGGGTACCAATGACAGGATCAGGCATCAATCCAGCACGTGCTCTTGG
ACCTTCGGTTGTCACTGCTACTTTCCATGAATCGCACTGGCTGTATTGGA
TTGGACCGCTAGTTGGAGGTGTTTTCTCCGGCCTTTTCTACAGATTCGTG
TTATCTGTCGAACCACCAAGTCAAGAAACCAAAGACATCAACCTCAAAAC
TGTTTCTGCCGCATAAAATCGGAAGGTCTCGACCACTGAAAATTTGCACC
ACCAAGAGAGCAACAAAGACAAAGACACAACCATGCCTTCATCAATGGAA
GAAATTCGAGATCCATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGC
AACTGCACTTTTCGTTATGAATGTTACGACCGTCGCAACATTGTCAGCCG
GATTCCAAACCGAGAAAATTATCGTTATTTCCCTCGCTATCGGTATGTCA
GTGTCGATTCTGGCGCAGATTTTCGGACCAGTCTGTGGTGCCCATTTAAA
TCCAGCTGTTACTGTTGCACTGTTTGCCAAAGGAGCAATTACCTTCGCAA
GAACTTGCTTTTATTTCATAATCCAACTGATAGGAGCTATCGTTGGTTCA
GCTATCACATACGGGCTCATCCCTGAAGAGCAGCATGGTGCATTGGGTGC
CCTCCAACCTTCACCAGGTGTCACTCAAGCACAGGCGTTCTTCGTTGAGA
TGTTACTGACTGTTTTGTTGTGTTTGACCGTCTTCTCTTCCACCTCAACT
GATCATGGACGAAAAGATTTTGGATTCTCAAATGCATTTGCTATTGGAAT
GTCAGTGACTGTCTCTCATTTGCTTGGGGTACCAATGACAGGATCAGGCA
TCAATCCAGCACGTGCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCAT
GAATCGCACTGGCTGTATTGGATTGGACCGCTAGTTGGAGGTGTTTTCTC
CGGCCTTTTCTACAGATTCGTGTTATCTGTCGAACCACCAAGTCAAGAAA
CCAAAGACATCAACCTCAAAACTGTTTCTGCCGCATAAAATCGGAAGGTC
TCGACCACTGAAAATTTGCACCACCAAGAGAGCAACAAAGACAAAGACAC
AACCATGCCTTCATCAATGGAAGAAATTCGAGATCCATTTTTCTGGAAAG
CCGTATTCGCCGAGTTTTTCGCAACTGCACTTTTCGTTATGAATGTTACG
ACCGTCGCAACATTGTCAGCCGGATTCCAAACCGAGAAAATTATCGTTAT
TTCCCTCGCTATCGGTATGTCAGTGTCGATTCTGGCGCAGATTTTCGGAC
CAGTCTGTGGTGCCCATTTAAATCCAGCTGTTACTGTTGCACTGTTTGCC
AAAGGAGCAATTACCTTCGCAAGAACTTGCTTTTATTTCATAATCCAACT
GATAGGAGCTATCGTTGGTTCAGCTATCACATACGGGCTCATCCCTGAAG
AGCAGCATGGTGCATTGGGTGCCCTCCAACCTTCACCAGGTGTCACTCAA
GCACAGGCGTTCTTCGTTGAGATGTTACTGACTGTTTTGTTGTGTTTGAC
CGTCTTCTCTTCCACCTCAACTGATCATGGACGAAAAGATTTTGGATTCT
CAAATGCATTTGCTATTGGAATGTCAGTGACTGTCTCTCATTTGCTTGGG
GTACCAATGACAGGATCAGGCATCAATCCAGCACGTGCTCTTGGACCTTC
GGTTGTCACTGCTACTTTCCATGAATCGCACTGGCTGTATTGGATTGGAC
CGCTAGTTGGAGGTGTTTTCTCCGGCCTTTTCTACAGATTCGTGTTATCT
GTCGAACCACCAAGTCAAGAAACCAAAGACATCAACCTCAAAACTGTTTC
TGCCGCATAAAATCGGAAGGTCTCGACCACTGAAAATTTGCACCACCAAG
AGAGCAACAAAGACAAAGACACAACCATGCCTTCATCAATGGAAGAAATT
CGAGATCCATTTTTCTGGAAAGCCGTATTCGCCGAGTTTTTCGCAACTGC
ACTTTTCGTTATGAATGTTACGACCGTCGCAACATTGTCAGCCGGATTCC
AAACCGAGAAAATTATCGTTATTTCCCTCGCTATCGGTATGTCAGTGTCG
ATTCTGGCGCAGATTTTCGGACCAGTCTGTGGTGCCCATTTAAATCCAGC
TGTTACTGTTGCACTGTTTGCCAAAGGAGCAATTACCTTCGCAAGAACTT
GCTTTTATTTCATAATCCAACTGATAGGAGCTATCGTTGGTTCAGCTATC
ACATACGGGCTCATCCCTGAAGAGCAGCATGGTGCATTGGGTGCCCTCCA
ACCTTCACCAGGTGTCACTCAAGCACAGGCGTTCTTCGTTGAGATGTTAC
TGACTGTTTTGTTGTGTTTGACCGTCTTCTCTTCCACCTCAACTGATCAT
GGACGAAAAGATTTTGGATTCTCAAATGCATTTGCTATTGGAATGTCAGT
GACTGTCTCTCATTTGCTTGGGGTACCAATGACAGGATCAGGCATCAATC
CAGCACGTGCTCTTGGACCTTCGGTTGTCACTGCTACTTTCCATGAATCG
CACTGGCTGTATTGGATTGGACCGCTAGTTGGAGGTGTTTTCTCCGGCCT
TTTCTACAGATTCGTGTTATCTGTCGAACCACCAAGTCAAGAAACCAAAG
ACATCAACCTCAAAACTGTTTCTGCCGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048507-exon-scaffold_143-1491911889:337912..337942 | TCONS_00048507-exon-scaffold_143-1491911889:337912..337942 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:337912..337942 | TCONS_00048507-exon-scaffold_143-1510915933:337912..337942 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:337912..337942 | TCONS_00048507-exon-scaffold_143-1575043694:337912..337942 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1491911889:343854..344194 | TCONS_00048507-exon-scaffold_143-1491911889:343854..344194 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:343854..344194 | TCONS_00048507-exon-scaffold_143-1510915933:343854..344194 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:343854..344194 | TCONS_00048507-exon-scaffold_143-1575043694:343854..344194 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1491911889:344710..344731 | TCONS_00048507-exon-scaffold_143-1491911889:344710..344731 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:344710..344731 | TCONS_00048507-exon-scaffold_143-1510915933:344710..344731 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:344710..344731 | TCONS_00048507-exon-scaffold_143-1575043694:344710..344731 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1491911889:344799..345018 | TCONS_00048507-exon-scaffold_143-1491911889:344799..345018 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:344799..345018 | TCONS_00048507-exon-scaffold_143-1510915933:344799..345018 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:344799..345018 | TCONS_00048507-exon-scaffold_143-1575043694:344799..345018 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1491911889:346980..347063 | TCONS_00048507-exon-scaffold_143-1491911889:346980..347063 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:346980..347063 | TCONS_00048507-exon-scaffold_143-1510915933:346980..347063 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:346980..347063 | TCONS_00048507-exon-scaffold_143-1575043694:346980..347063 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1491911889:347340..347482 | TCONS_00048507-exon-scaffold_143-1491911889:347340..347482 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1510915933:347340..347482 | TCONS_00048507-exon-scaffold_143-1510915933:347340..347482 | Clytia hemisphaerica | exon |
| TCONS_00048507-exon-scaffold_143-1575043694:347340..347482 | TCONS_00048507-exon-scaffold_143-1575043694:347340..347482 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_143 | supercontig | scaffold_143:337912..347482 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005215 | transporter activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006810 | transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006810 |
transport |
| cellular_component |
GO:0016020 |
membrane |
| molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00048507 vs. Swiss-Prot (Human)
Match: AQP1 (Aquaporin-1 OS=Homo sapiens GN=AQP1 PE=1 SV=3) HSP 1 Score: 170.244 bits (430), Expect = 1.672e-50 Identity = 98/247 (39.68%), Postives = 139/247 (56.28%), Query Frame = 3
Query: 84 EEIRDPFFWKAVFAEFFATALFVMNVTTVATLSA-GFQ---------TEKIIVISLAIGMSVSILAQIFGPVCGAHLNPAVTVALFAKGAITFARTCFYFIIQLIGAIVGSAITYGLIPEEQHGALGALQPSPGVTQAQAFFVEMLLTVLLCLTVFSSTSTDHGRKDFGFSNAFAIGMSVTVSHLLGVPMTGSGINPARALGPSVVTATFHESHWLYWIGPLVGGVFSGLFYRFVLSVEPPSQETKD 794
E + FW+AV AEF AT LFV ++ SA GF+ + + +SLA G+S++ LAQ G + GAHLNPAVT+ L I+ R Y I Q +GAIV +AI G+ +LG + GV Q +E++ T+ L L V + +TD R+D G S AIG+SV + HLL + TG GINPAR+ G +V+T F +HW++W+GP +GG + L Y F+L+ P S + D
Sbjct: 3 SEFKKKLFWRAVVAEFLATTLFVF----ISIGSALGFKYPVGNNQTAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIVATAILSGITSSLTGNSLGRNDLADGVNSGQGLGIEIIGTLQLVLCVLA--TTDRRRRDLGGSAPLAIGLSVALGHLLAIDYTGCGINPARSFGSAVITHNF-SNHWIFWVGPFIGGALAVLIYDFILA--PRSSDLTD 240
The following BLAST results are available for this feature:
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