|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048503 ID=TCONS_00048503|Name=TCONS_00048503|organism=Clytia hemisphaerica|type=transcript|length=3477bp TCAAGTTATAATCAATACATACAGCAATAAAAAGTCGAATATCGATGTTG GCGAAGTAATAGTGGGAAAGCAACCAGTACTGAAAGCAACAGCCACCACA ATGTCACACGAAGCCGGTTTTCTGGTGGATTTCCCATACACAAATGACCA AGGGAAATTCTTGTTGAGGAAAGACAAGCAACGAAAAAACTTGTGTGGAG AATTCTGTAGTACAACGTTATGCTGTCGAGGACAAAATAAAAGTGAGCTG GCTTACAGGATGATGTTCTGGCTTGGTATCATTCTAGCCGTTATCGCCAT TACCGTTACTCTCATTAAAGAGTTGTTTGAAGGCGTGAAGGGCGAAGACA CCATCTTACACCTTAGTATAGGTGAACTTGTCCTAGCCATTCTCTCAGTC ACTACAACTCTTTCAAAACATCTCATCAAACACAACGATGTTATAGTATC CCAAAAACGAATCCGATCAGCTGAAACTAAAAAAGACCAACAGAAAGCGC TGACACAACGTCGTAAAGTACAAATTATCTTGACAACCACTTTGTTGTTA TTTGTGGGAGCCATAGTAACCGGCTTCACCATTTTGATGGCGAAAGACCC TGAAGAACACGCATACTTAACGTACACCAAATTCATCACAGTTCTCACCT TATTCCTGTCAATCATTTTAGACGGAGTCATCAATGATATTTTATCTGAC TATCACAGTCTAGTGCAAATAGATCAATGCAAGCTAGTGATCCATCAACT TAATTTAGAATTACGCGATGCATTGAATGTAGTTGGGGATAAGGAACGAG CGAATCAGTTAACTTCTTACGTTGATAATCATGAGATTTTCTGTTTGAGT GATCATATGATTTTTCTTGCACCCAACGAAGGAGGGCCTACAGTGACGAA TGGAGATCACCCTATGGTGGAGAGTACACACCTTATACATGAAAACGAGG CTAATGATTGGGTTTAAGGGTGTTGTGCTTTTTGGTCAATGGAGAAgacg tttttgaaaaaattatttatttttttataaccgTATAAACATTTCTTACT GGCCGTCGAGAGACAGCCTTGAAGATTGTCTTGATAATGTTcgtataatt tttttgattaatttattTTGTACGTTAAATATTTCATATATGCTTTTTCT ACATTAGCTTCACTTGTTTCTTATATTATATCAGATTTACATTTATTTTA TGAGCATTTTATTTAGTCAAccggtacttAAAACTAATCCtgagaaaaag tttaaattgcCATCCAACAAGCACACATTTGAACGTGGACCTTAACCCTT TATGTGCCAATGttgtatatatcagacatgggctatgtaggagggcgaag ccctcctgtaatgcccagtttgagttagaaatcgtcatttttggtctagc TGTAGGAatcggattgggcttcatggccaagcacaaaaaaatcaaaagtg agtcctttttgcgagattttaagctaaaaagtaaaaaaaaaaaaacatgg aaaaatccacttttttaagattttgaccgttttttgatcatttttggtca acgagtgatccaagaacctccaaatttggccctgattaacttgattctgt cctccagcgaattagtttgaagttttaccactcaGCACCTTTCAATCATT CTATGACTGCTTTAATTTCCCTTACCTATAGCCCCTTAGCCACCGCCCTT CTTTATTCGGGCGGCACCGAAGGCGCCTAAAAGAAAggggagactctaag ctatccaacggactataaacgagcttctaactccttctagatccggagat ataagcctttaaagtttgaactagcgattttttttctaaagctcagaaaa aaatgaccttggtacttaaagggttaatgatTATTGGTTGAGAGGTGATG ACACAAATAACTATTTTACCATAAAGCTTGGACTTgtctttttccttttt aattcaGATTATCAAAACCCAATCTTTTTCCTAATATACTTTCAATATTG CACAATTTACTTTTCAATCACCCATTCAATGAAATACATTGTCATAACAT CAATTATTGTTTACGAAAAATCTCTCCTGGGTGAATTCGTCCTCCTCTCA TGAATTATAAAACATGATATTATTTTTAGAATGCTCCTTTCTCTCAAAGT GGGTATAAATAGTGTGAATATTGTGTAGGAAAGTTCTTTCTTTGTATTTA ACGCGATTTTTCAAGAAGGAACTCTACAGTATGACCAACATGGCGGCCAC AACAGAACTGATGCTAGCAATTAAAACGCTCAACTTGCAGAAAGTGGCTG AGCTTTTagctaaaatgaaaaagaatggcAAATCCAACGGTACCGGAGAT TCAAACAACAACATGCAGATTTCACTTATCAATGCCGCTATGGATAGCGG ATCAGTGGACATGCTGCAAATGGTTTTAAACAAAGCCAAGGAAAGCGAAA AATCGAAAGAAGCTAGTTCGCAGCAAAAGCCAGAAGAATCGAATTCGCAA GAAGAATCCACCAAAAAGGAGGGACAAATCCAATCATCAGATAAGGCGAA AGCGCAAAACCCAAAGTTTCTAGAAAACGCTTTTAAAGcttggaaatcaa aaatcaaaaaaccagAGACTGACAAAACGACTGAAACGGGTGCTTCCGCA AAACCAAAGTACCGTAGACCAAGCTGTCCAAGCGGAATagatgaaaaata tttcttggaacaAAACAGAAGACATTGTGTATCGCAAGCCGAAGAGCGCG CTGAGGATTTAGAGGAGTATGACCGGAATAGAGAGAAAGCTTACCAAGAA GAAGTCGCAAAAGCAGAAGAGATGCTTAAGAGCTTGAAAGCGAGATCTAG GAGGAAACACAGTGTAGGTAAAATGTTGTGAAAGATTTCGATTCTCAAGA AGATGAACTTCTTAGAAGAATCACGGGTTTTGATATTCATTAGAAGTCGA CATAAAAGTATACCACATTAGAAAAACAATACAGCGAGACTTCGTGCAGA GGGATAATGTTAATTGGTATTAAGAATGAAACGATATCATGAAAGCATTT CACTACCGTGTTCTTAAATTCAATAGAAGTCGACACCAAAAAGTACCATA CTTTTACGTGGAAAAGATGAGTAAGGCCTCTActgtcaaaaagaattttt gattgAGACGGAAGCAAAGATTGAGACGCAAGAAATATTAACCGGAAAAA AACATCGATAATTTGAATTCGATTCTTTGCAACATTCGCTATTGGTGGAA AGAGTCACATTTTAAATTCAGATTAAATTATTGATCAAGATATTTTTGGT ATAGAATATTTTTGTACACAATTGTGAATACATATTATGACAGATTGATG AATTTTGTTCGACACATCAAGTTATTTTGACGATTGATCTTTTTGATaca tttcaagaaaaactaaatttaaccttgctgttgttttgatgtttctccCC TTGCCAAAATCTCCAAAAATATGCACT Run BLAST on NCBI protein sequence of TCONS_00048503-protein >TCONS_00048503-protein ID=TCONS_00048503-protein|Name=TCONS_00048503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
QVIINTYSNKKSNIDVGEVIVGKQPVLKATATTMSHEAGFLVDFPYTNDQ GKFLLRKDKQRKNLCGEFCSTTLCCRGQNKSELAYRMMFWLGIILAVIAI TVTLIKELFEGVKGEDTILHLSIGELVLAILSVTTTLSKHLIKHNDVIVS QKRIRSAETKKDQQKALTQRRKVQIILTTTLLLFVGAIVTGFTILMAKDP EEHAYLTYTKFITVLTLFLSIILDGVINDILSDYHSLVQIDQCKLVIHQL NLELRDALNVVGDKERANQLTSYVDNHEIFCLSDHMIFLAPNEGGPTVTN GDHPMVESTHLIHENEANDWV Run BLAST on NCBI transcript from alignment at scaffold_143:234075..238717+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048503 ID=TCONS_00048503|Name=TCONS_00048503|organism=Clytia hemisphaerica|type=transcript|length=4643bp|location=Sequence derived from alignment at scaffold_143:234075..238717+ (Clytia hemisphaerica) TCAAGTTATAATCAATACATACAGCAATAAAAAGTCGAATATCGATGTTG
GCGAAGTAATAGTGGGAAAGCAACCAGTACTGAAAGCAACAGCCACCACA
ATGTCACACGAAGCCGGTTTTCTGGTGGATTTCCCATACACAAATGACCA
AGGGAAATTCTTGTTGAGGAAAGACAAGCAACGAAAAAACTTGTGTGGAG
AATTCTGTAGTACAACGTTATGCTGTCGAGGACAAAATAAAAGTGAGCTG
GCTTACAGGGTAGGTTTTAACTTATTGAATCCACAAAGACTTTCACTGTG
TAAAACGCAACATCANAGTGAGCTGGCTTACAGGGTAGGTTTTAACTTAT
TGAATCCACAAAGACTTTCACTGTGTGAAACGCAACATCACAACAAAGCA
CTTTCAAACCACAAAGCACAGCTTTTCCTGTGAACGACTCCATCATTGTA
TAAACGCTTTGAACTATCAATCAAGTTGATTAGTAAAGATTTCTTCATAT
TGAGAAATACATTCTCATTTACTGAGTTTGATagaaaaaattgttctgtt
gAATCCAAGTGAAGCCTTTGATCTGAATAACTTCTATAACCAATATACAT
CCAAGTAAATTAGATTACGTTCTTTTTCAGATGATGTTCTGGCTTGGTAT
CATTCTAGCCGTTATCGCCATTACCGTTACTCTCATTAAAGAGTTGTTTG
AAGGCGTGAAGGGCGAAGACACCATCTTACACCTTAGTATAGGTGAACTT
GTCCTAGCCATTCTCTCAGTCACTACAACTCTTTCAAAACATCTCATCAA
ACACAACGATGTTATAGTATCCCAAAAACGAATCCGATCAGCTGAAACTA
AAAAAGACCAACAGAAAGCGCTGACACAACGTCGTAAAGTACAAATTATC
TTGACAACCACTTTGTTGTTATTTGTGGGAGCCATAGTAACCGGCTTCAC
CATTTTGATGGCGAAAGACCCTGAAGAACACGCATACTTAACGTACACCA
AATTCATCACAGTTCTCACCTTATTCCTGTCAATCATTTTAGACGGAGTC
ATCAATGATATTTTATCTGACTATCACAGTCTAGTGCAAATAGATCAATG
CAAGCTAGTGATCCATCAACTTAATTTAGAATTACGCGATGCATTGAATG
TAGTTGGGGATAAGGAACGAGCGAATCAGTTAACTTCTTACGTTGATAAT
CATGAGATTTTCTGTTTGAGTGATCATATGATTTTTCTTGCACCCAACGA
AGGAGGGCCTACAGTGACGAATGGAGATCACCCTATGGTGGAGAGTACAC
ACCTTATACATGAAAACGAGGCTAATGATTGGGTTTAAGGGTGTTGTGCT
TTTTGGTCAATGGAGAAgacgtttttgaaaaaattatttatttttttata
accgTATAAACATTTCTTACTGGCCGTCGAGAGACAGCCTTGAAGATTGT
CTTGATAATGTTcgtataatttttttgattaatttattTTGTACGTTAAA
TATTTCATATATGCTTTTTCTACATTAGCTTCACTTGTTTCTTATATTAT
ATCAGATTTACATTTATTTTATGAGCATTTTATTTAGTCAAATActgggt
gacccacgaaaaaatTCGGATgtttctcgacgtcttgaggccgaacaaat
gtcccaaagtgcttggagttttgtatcctaacttaaaatttgagctatta
ctttttaaatttgacccacAAGTTcactacttatgagcttttaaactcaa
aattcacttttcggaaagtgtaaaaaccaagtaaaaaaggggtatcaaat
taggtatttttagacgttttcgATATAGAGTTGTTGAGGAAATTCCATGA
AAgtgccaatttttataaaaactagtcttggtttaaacaaaaattacttt
caaaggtgtttttaataatgattaatgtcataaaactcgttagataagtc
aatttgtaagtgattttctaattggttgcataaatttaatacctcttttt
tacttgttttttacattttccgaaaagtgaattttaactataaaagctca
taagtagagaactagttggtcaaatttaaaagtgataactcaaattttaa
gttaggatatctaccgGATTTCTAAATACCGAAACtgcaagcactttggg
acatttgttcggcctcaagacgtcgagaaactctgaactttttcgtgggt
cacccggtacttAAAACTAATCCtgagaaaaagtttaaattgcCATCCAA
CAAGCACACATTTGAACGTGGACCTTAACCCTTTATGTGCCAATGttgta
tatatcagacatgggctatgtaggagggcgaagccctcctgtaatgccca
gtttgagttagaaatcgtcatttttggtctagcTGTAGGAatcggattgg
gcttcatggccaagcacaaaaaaatcaaaagtgagtcctttttgcgagat
tttaagctaaaaagtaaaaaaaaaaaaacatggaaaaatccactttttta
agattttgaccgttttttgatcatttttggtcaacgagtgatccaagaac
ctccaaatttggccctgattaacttgattctgtcctccagcgaattagtt
tgaagttttaccactcaGCACCTTTCAATCATTCTATGACTGCTTTAATT
TCCCTTACCTATAGCCCCTTAGCCACCGCCCTTCTTTATTCGGGCGGCAC
CGAAGGCGCCTAAAAGAAAggggagactctaagctatccaacggactata
aacgagcttctaactccttctagatccggagatataagcctttaaagttt
gaactagcgattttttttctaaagctcagaaaaaaatgaccttggtactt
aaagggttaatgatTATTGGTTGAGAGGTGATGACACAAATAACTATTTT
ACCATAAAGCTTGGACTTgtctttttcctttttaattcaGATTATCAAAA
CCCAATCTTTTTCCTAATATACTTTCAATATTGCACAATTTACTTTTCAA
TCACCCATTCAATGAAATACATTGTCATAACATCAATTATTGTTTACGAA
AAATCTCTCCTGGGTGAATTCGTCCTCCTCTCATGAATTATAAAACATGA
TATTATTTTTAGAATGCTCCTTTCTCTCAAAGTGGGTATAAATAGTGTGA
ATATTGTGTAGGAAAGTTCTTTCTTTGTATTTAACGCGATTTTTCAAGAA
GGAACTCTACAGTATGACCAACATGGTAAGTTTTCCATGGAAGTAGACCT
TAGTACTTGATTGGTCGAAATGATTATTTTTCGTTGTTGTTCTTCATTCT
GATAGATTTTGCTTGATTTTACTTTAAATGAAAATGGAAGTGGTTTAAGC
TGATTCTATTCAACTGACActaaatttcttttaatttggtAAACTTTCTA
TTTTCAAGGCGGCCACAACAGAACTGATGCTAGCAATTAAAACGCTCAAC
TTGCAGAAAGTGGCTGAGCTTTTagctaaaatgaaaaagaatggcAAATC
CAACGGTACCGGAGATTCAAACAACAACATGCAGATTTCACTTATCAATG
CCGCTATGGATAGCGGATCAGTGGACATGCTGCAAATGGTTTTAAACAAA
GCCAAGGAAAGCGAAAAATCGAAAGAAGCTAGTTCGCAGCAAAAGCCAGA
AGAATCGAATTCGCAAGAAGAATCCACCAAAAAGGAGGGACAAATCCAAT
CATCAGATAAGGCGAAAGCGCAAAACCCAAAGTTTCTAGAAAACGCTTTT
AAAGcttggaaatcaaaaatcaaaaaaccagAGACTGACAAAACGACTGA
AACGGGTGCTTCCGCAAAACCAAAGTACCGTAGACCAAGCTGTCCAAGCG
GAATagatgaaaaatatttcttggaacaAAACAGAAGACATTGTGTATCG
CAAGCCGAAGAGCGCGCTGAGGATTTAGAGGAGTATGACCGGAATAGAGA
GAAAGCTTACCAAGAAGAAGTCGCAAAAGCAGAAGAGATGCTTAAGAGCT
TGAAAGCGAGATCTAGGAGGAAACACAGTGTAGGTAAAATGTTGTGAAAG
ATTTCGATTCTCAAGAAGATGAACTTCTTAGAAGAATCACGGGTTTTGAT
ATTCATTAGAAGTCGACATAAAAGTATACCACATTAGAAAAACAATACAG
CGAGACTTCGTGCAGAGGGATAATGTTAATTGGTATTAAGAATGAAACGA
TATCATGAAAGCATTTCACTACCGTGTTCTTAAATTCAATAGAAGTCGAC
ACCAAAAAGTACCATACTTTTACGTGGAAAAGATGAGTAAGGCCTCTAct
gtcaaaaagaatttttgattgAGACGGAAGCAAAGATTGAGACGCAAGAA
ATATTAACCGGAAAAAAACATCGATAATTTGAATTCGATTCTTTGCAACA
TTCGCTATTGGTGGAAAGAGTCACATTTTAAATTCAGATTAAATTATTGA
TCAAGATATTTTTGGTATAGAATATTTTTGTACACAATTGTGAATACATA
TTATGACAGATTGATGAATTTTGTTCGACACATCAAGTTATTTTGACGAT
TGATCTTTTTGATacatttcaagaaaaactaaatttaaccttgctgttgt
tttgatgtttctccCCTTGCCAAAATCTCCAAAAATATGCACT Coding sequence (CDS) from alignment at scaffold_143:234075..238717+ >TCONS_00048503 ID=TCONS_00048503|Name=TCONS_00048503|organism=Clytia hemisphaerica|type=CDS|length=1932bp|location=Sequence derived from alignment at scaffold_143:234075..238717+ (Clytia hemisphaerica) CAAGTTATAATCAATACATACAGCAATAAAAAGTCGAATATCGATGTTGG CGAAGTAATAGTGGGAAAGCAACCAGTACTGAAAGCAACAGCCACCACAA TGTCACACGAAGCCGGTTTTCTGGTGGATTTCCCATACACAAATGACCAA GGGAAATTCTTGTTGAGGAAAGACAAGCAACGAAAAAACTTGTGTGGAGA ATTCTGTAGTACAACGTTATGCTGTCGAGGACAAAATAAAAGTGAGCTGG CTTACAGGATGATGTTCTGGCTTGGTATCATTCTAGCCGTTATCGCCATT ACCGTTACTCTCATTAAAGAGTTGTTTGAAGGCGTGAAGGGCGAAGACAC CATCTTACACCTTAGTATAGGTGAACTTGTCCTAGCCATTCTCTCAGTCA CTACAACTCTTTCAAAACATCTCATCAAACACAACGATGTTATAGTATCC CAAAAACGAATCCGATCAGCTGAAACTAAAAAAGACCAACAGAAAGCGCT GACACAACGTCGTAAAGTACAAATTATCTTGACAACCACTTTGTTGTTAT TTGTGGGAGCCATAGTAACCGGCTTCACCATTTTGATGGCGAAAGACCCT GAAGAACACGCATACTTAACGTACACCAAATTCATCACAGTTCTCACCTT ATTCCTGTCAATCATTTTAGACGGAGTCATCAATGATATTTTATCTGACT ATCACAGTCTAGTGCAAATAGATCAATGCAAGCTAGTGATCCATCAACTT AATTTAGAATTACGCGATGCATTGAATGTAGTTGGGGATAAGGAACGAGC GAATCAGTTAACTTCTTACGTTGATAATCATGAGATTTTCTGTTTGAGTG ATCATATGATTTTTCTTGCACCCAACGAAGGAGGGCCTACAGTGACGAAT GGAGATCACCCTATGGTGGAGAGTACACACCTTATACATGAAAACGAGGC TAATGATTGGGTTTAACAAGTTATAATCAATACATACAGCAATAAAAAGT CGAATATCGATGTTGGCGAAGTAATAGTGGGAAAGCAACCAGTACTGAAA GCAACAGCCACCACAATGTCACACGAAGCCGGTTTTCTGGTGGATTTCCC ATACACAAATGACCAAGGGAAATTCTTGTTGAGGAAAGACAAGCAACGAA AAAACTTGTGTGGAGAATTCTGTAGTACAACGTTATGCTGTCGAGGACAA AATAAAAGTGAGCTGGCTTACAGGATGATGTTCTGGCTTGGTATCATTCT AGCCGTTATCGCCATTACCGTTACTCTCATTAAAGAGTTGTTTGAAGGCG TGAAGGGCGAAGACACCATCTTACACCTTAGTATAGGTGAACTTGTCCTA GCCATTCTCTCAGTCACTACAACTCTTTCAAAACATCTCATCAAACACAA CGATGTTATAGTATCCCAAAAACGAATCCGATCAGCTGAAACTAAAAAAG ACCAACAGAAAGCGCTGACACAACGTCGTAAAGTACAAATTATCTTGACA ACCACTTTGTTGTTATTTGTGGGAGCCATAGTAACCGGCTTCACCATTTT GATGGCGAAAGACCCTGAAGAACACGCATACTTAACGTACACCAAATTCA TCACAGTTCTCACCTTATTCCTGTCAATCATTTTAGACGGAGTCATCAAT GATATTTTATCTGACTATCACAGTCTAGTGCAAATAGATCAATGCAAGCT AGTGATCCATCAACTTAATTTAGAATTACGCGATGCATTGAATGTAGTTG GGGATAAGGAACGAGCGAATCAGTTAACTTCTTACGTTGATAATCATGAG ATTTTCTGTTTGAGTGATCATATGATTTTTCTTGCACCCAACGAAGGAGG GCCTACAGTGACGAATGGAGATCACCCTATGGTGGAGAGTACACACCTTA TACATGAAAACGAGGCTAATGATTGGGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00048503-exon-scaffold_143-1491911889:234075..234333 | TCONS_00048503-exon-scaffold_143-1491911889:234075..234333 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1510915933:234075..234333 | TCONS_00048503-exon-scaffold_143-1510915933:234075..234333 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1575043694:234075..234333 | TCONS_00048503-exon-scaffold_143-1575043694:234075..234333 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1491911889:234705..235665 | TCONS_00048503-exon-scaffold_143-1491911889:234705..235665 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1510915933:234705..235665 | TCONS_00048503-exon-scaffold_143-1510915933:234705..235665 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1575043694:234705..235665 | TCONS_00048503-exon-scaffold_143-1575043694:234705..235665 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1491911889:236278..237299 | TCONS_00048503-exon-scaffold_143-1491911889:236278..237299 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1510915933:236278..237299 | TCONS_00048503-exon-scaffold_143-1510915933:236278..237299 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1575043694:236278..237299 | TCONS_00048503-exon-scaffold_143-1575043694:236278..237299 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1491911889:237483..238717 | TCONS_00048503-exon-scaffold_143-1491911889:237483..238717 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1510915933:237483..238717 | TCONS_00048503-exon-scaffold_143-1510915933:237483..238717 | Clytia hemisphaerica | exon |
TCONS_00048503-exon-scaffold_143-1575043694:237483..238717 | TCONS_00048503-exon-scaffold_143-1575043694:237483..238717 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_143 | supercontig | scaffold_143:234075..238717 + |
Blast
The following BLAST results are available for this feature:
|