TCONS_00048497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048497
Unique NameTCONS_00048497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length279

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048497 ID=TCONS_00048497|Name=TCONS_00048497|organism=Clytia hemisphaerica|type=transcript|length=279bp
TTTTCTAACCTTTATTTCGATGATACAgtattttagTGCGTATTTTAACG
ATATTTAGATTAAAACCAATTGTAAATTTTCGGTGTTGTGCATGTCTTAT
TTTTGTactaatatatattttttctttggcATTTTTTAGGGAAATATCTC
ATAGgtagattttgaaattatttcgtTTTCGAATTATTCGCTGTTTTAGT
TTTTGTTGTTGAATATTTTATTGCTATCCCTGTCACCCTCCAGATTTCCC
AAGACATAGGATGCCTTTGTCAAAATTCA
Run BLAST on NCBI

transcript from alignment at scaffold_143:181827..182308+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048497 ID=TCONS_00048497|Name=TCONS_00048497|organism=Clytia hemisphaerica|type=transcript|length=482bp|location=Sequence derived from alignment at scaffold_143:181827..182308+ (Clytia hemisphaerica)
TTTTCTAACCTTTATTTCGATGATACAGTAGACAATTtagtataccttat
cggggaaaacttcgtcggggaaaattttcgtcgggaaaaattttcgtcgg
agaaaaatattcgtcacttgctggtagttcgtaaacgcattaaggccggg
gaaaattttcgtcggggaaaaatattcgtcacttggccaaaatttcgtca
cttttccccgacgaagttttccccgataaggtattttagTGCGTATTTTA
ACGATATTTAGATTAAAACCAATTGTAAATTTTCGGTGTTGTGCATGTCT
TATTTTTGTactaatatatattttttctttggcATTTTTTAGGGAAATAT
CTCATAGgtagattttgaaattatttcgtTTTCGAATTATTCGCTGTTTT
AGTTTTTGTTGTTGAATATTTTATTGCTATCCCTGTCACCCTCCAGATTT
CCCAAGACATAGGATGCCTTTGTCAAAATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030846XLOC_030846Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048497-exon-scaffold_143-1491911889:181827..181853TCONS_00048497-exon-scaffold_143-1491911889:181827..181853Clytia hemisphaericaexon
TCONS_00048497-exon-scaffold_143-1510915933:181827..181853TCONS_00048497-exon-scaffold_143-1510915933:181827..181853Clytia hemisphaericaexon
TCONS_00048497-exon-scaffold_143-1575043694:181827..181853TCONS_00048497-exon-scaffold_143-1575043694:181827..181853Clytia hemisphaericaexon
TCONS_00048497-exon-scaffold_143-1491911889:182057..182308TCONS_00048497-exon-scaffold_143-1491911889:182057..182308Clytia hemisphaericaexon
TCONS_00048497-exon-scaffold_143-1510915933:182057..182308TCONS_00048497-exon-scaffold_143-1510915933:182057..182308Clytia hemisphaericaexon
TCONS_00048497-exon-scaffold_143-1575043694:182057..182308TCONS_00048497-exon-scaffold_143-1575043694:182057..182308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:181827..182308 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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