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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048479 ID=TCONS_00048479|Name=TCONS_00048479|organism=Clytia hemisphaerica|type=transcript|length=1422bp
TTAGCTGCATTACATAAAATGTTATAAAGAAAACGTCGTACTACTATAGT
GGTACTAAATAACAATGGATAATTATACGCAGCCAATGTTTAGTGTTGGT
GGTGGCGGACCCAGATTTTCTGCTTTGGAGTTACCAAGCACTGACACAAT
CCCTTCATGGTTCACAATCGTATTTGCGGCTATTAACGGTGGAGGGTTCT
GCCTGAACACTTTATCACTATGGTTACTGGCTACCCGAAAGATTGTCTAT
AAGTTCAAAGTGAATGCTTTTATCGTTTCGTTATGTGTGTCGGACTTCTT
GGTTTCCCTATCGGGGTTTTACTTCCTAGGAACCATAACATCGACAAGCG
GAACTTTATTCTCAAGACGTGTGGCCACTATCATATTTGGTTTTTCACTG
GAGACTTCATTAATGAGTCTTTGTAATTTGAGTTATGAGAGATTGACCGC
TATTCGTAAACCGTTTCATTATCACGAGATTTTGTCGACCGGTAAAATCG
TCTGTATCTCCGTTTTCGGTTGGTCATTTTGTATATCCCTTCTTGCAGTG
CAATTCATTTTTGGATTCATATACCAGCATCATAAATATGTCTATTTCAA
TTGGATAGTTTTTATCAGTTTGGCGCTCGTTTCAATGGCTTTTCTTGCCA
TTGTTTACGTATATCTAATATGTGAGATCAAGCGCCATTCCTCTCATATT
CGATCAGTTTCGATTGCAAAAGACAGTCACGGAAAACACGATTATTATCA
CGGAAGTGACGTAAGTAATAACGCGTGTGACACGCTTACGGAGGTGACGT
ACGCGTCAGATAGCAGCGCGACCACGCGGGCGATCGATAAAAATAGTGAC
TACTTATCACACTTAAGTGATAACAGATCTCTCTTGGGAATTCCCAAATC
AGCGAGCCATGATATGGACTTACGAAAAGCAGCTATTGAAAAATCAAGAA
CTAATCAGAAAAGATCAGGTGAAAAACGCCGGCTATCCGCCCGTGCGTAT
TTGCTACGGAAGGAGCGTCGTTCCGTATTGTTTTGTCTCAGTATTGTGGT
GCTTTTTGTTGCGACTTGGATGCCGGTTATCGTATTTTTCATCCGGTGCT
TGATCAATAACACGTGTGAAAATGATGATCAACTTTTATTCATTTGCTCA
TGTTTGGTTTCCATCAACTCTCTACTCGATCCAATCCTCTACTTCATCAT
CACTAAAGACTTCCGTAATTTTCTATGCGGAAAAGTATGTCGGAACACTT
CCAGAAGGGGTAGCTATGAATCCCGAAGAAGTAGCAGTgcaaattatatt
taaattgATATTTAATTATGATCTTTTTAGGgaatttttactttcttttt
ttattaaattatttttgtttatatataGTAACGTATTAATATCGAatgaa
ttattttgataaaatatttccc Run BLAST on NCBI protein sequence of TCONS_00048479-protein >TCONS_00048479-protein ID=TCONS_00048479-protein|Name=TCONS_00048479-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp
MDNYTQPMFSVGGGGPRFSALELPSTDTIPSWFTIVFAAINGGGFCLNTL
SLWLLATRKIVYKFKVNAFIVSLCVSDFLVSLSGFYFLGTITSTSGTLFS
RRVATIIFGFSLETSLMSLCNLSYERLTAIRKPFHYHEILSTGKIVCISV
FGWSFCISLLAVQFIFGFIYQHHKYVYFNWIVFISLALVSMAFLAIVYVY
LICEIKRHSSHIRSVSIAKDSHGKHDYYHGSDVSNNACDTLTEVTYASDS
SATTRAIDKNSDYLSHLSDNRSLLGIPKSASHDMDLRKAAIEKSRTNQKR
SGEKRRLSARAYLLRKERRSVLFCLSIVVLFVATWMPVIVFFIRCLINNT
CENDDQLLFICSCLVSINSLLDPILYFIITKDFRNFLCGKVCRNTSRRGS
YESRRSSSANYI Run BLAST on NCBI transcript from alignment at scaffold_142:735890..737311 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048479 ID=TCONS_00048479|Name=TCONS_00048479|organism=Clytia hemisphaerica|type=transcript|length=1422bp|location=Sequence derived from alignment at scaffold_142:735890..737311 (Clytia hemisphaerica)
gggaaatattttatcaaaataattcatTCGATATTAATACGTTACtatat
ataaacaaaaataatttaataaaaaaagaaagtaaaaattcCCTAAAAAG
ATCATAATTAAATATcaatttaaatataatttgcACTGCTACTTCTTCGG
GATTCATAGCTACCCCTTCTGGAAGTGTTCCGACATACTTTTCCGCATAG
AAAATTACGGAAGTCTTTAGTGATGATGAAGTAGAGGATTGGATCGAGTA
GAGAGTTGATGGAAACCAAACATGAGCAAATGAATAAAAGTTGATCATCA
TTTTCACACGTGTTATTGATCAAGCACCGGATGAAAAATACGATAACCGG
CATCCAAGTCGCAACAAAAAGCACCACAATACTGAGACAAAACAATACGG
AACGACGCTCCTTCCGTAGCAAATACGCACGGGCGGATAGCCGGCGTTTT
TCACCTGATCTTTTCTGATTAGTTCTTGATTTTTCAATAGCTGCTTTTCG
TAAGTCCATATCATGGCTCGCTGATTTGGGAATTCCCAAGAGAGATCTGT
TATCACTTAAGTGTGATAAGTAGTCACTATTTTTATCGATCGCCCGCGTG
GTCGCGCTGCTATCTGACGCGTACGTCACCTCCGTAAGCGTGTCACACGC
GTTATTACTTACGTCACTTCCGTGATAATAATCGTGTTTTCCGTGACTGT
CTTTTGCAATCGAAACTGATCGAATATGAGAGGAATGGCGCTTGATCTCA
CATATTAGATATACGTAAACAATGGCAAGAAAAGCCATTGAAACGAGCGC
CAAACTGATAAAAACTATCCAATTGAAATAGACATATTTATGATGCTGGT
ATATGAATCCAAAAATGAATTGCACTGCAAGAAGGGATATACAAAATGAC
CAACCGAAAACGGAGATACAGACGATTTTACCGGTCGACAAAATCTCGTG
ATAATGAAACGGTTTACGAATAGCGGTCAATCTCTCATAACTCAAATTAC
AAAGACTCATTAATGAAGTCTCCAGTGAAAAACCAAATATGATAGTGGCC
ACACGTCTTGAGAATAAAGTTCCGCTTGTCGATGTTATGGTTCCTAGGAA
GTAAAACCCCGATAGGGAAACCAAGAAGTCCGACACACATAACGAAACGA
TAAAAGCATTCACTTTGAACTTATAGACAATCTTTCGGGTAGCCAGTAAC
CATAGTGATAAAGTGTTCAGGCAGAACCCTCCACCGTTAATAGCCGCAAA
TACGATTGTGAACCATGAAGGGATTGTGTCAGTGCTTGGTAACTCCAAAG
CAGAAAATCTGGGTCCGCCACCACCAACACTAAACATTGGCTGCGTATAA
TTATCCATTGTTATTTAGTACCACTATAGTAGTACGACGTTTTCTTTATA
ACATTTTATGTAATGCAGCTAA Coding sequence (CDS) from alignment at scaffold_142:735890..737311 >TCONS_00048479 ID=TCONS_00048479|Name=TCONS_00048479|organism=Clytia hemisphaerica|type=CDS|length=1239bp|location=Sequence derived from alignment at scaffold_142:735890..737311 (Clytia hemisphaerica)
ttaaatataatttgcACTGCTACTTCTTCGGGATTCATAGCTACCCCTTC
TGGAAGTGTTCCGACATACTTTTCCGCATAGAAAATTACGGAAGTCTTTA
GTGATGATGAAGTAGAGGATTGGATCGAGTAGAGAGTTGATGGAAACCAA
ACATGAGCAAATGAATAAAAGTTGATCATCATTTTCACACGTGTTATTGA
TCAAGCACCGGATGAAAAATACGATAACCGGCATCCAAGTCGCAACAAAA
AGCACCACAATACTGAGACAAAACAATACGGAACGACGCTCCTTCCGTAG
CAAATACGCACGGGCGGATAGCCGGCGTTTTTCACCTGATCTTTTCTGAT
TAGTTCTTGATTTTTCAATAGCTGCTTTTCGTAAGTCCATATCATGGCTC
GCTGATTTGGGAATTCCCAAGAGAGATCTGTTATCACTTAAGTGTGATAA
GTAGTCACTATTTTTATCGATCGCCCGCGTGGTCGCGCTGCTATCTGACG
CGTACGTCACCTCCGTAAGCGTGTCACACGCGTTATTACTTACGTCACTT
CCGTGATAATAATCGTGTTTTCCGTGACTGTCTTTTGCAATCGAAACTGA
TCGAATATGAGAGGAATGGCGCTTGATCTCACATATTAGATATACGTAAA
CAATGGCAAGAAAAGCCATTGAAACGAGCGCCAAACTGATAAAAACTATC
CAATTGAAATAGACATATTTATGATGCTGGTATATGAATCCAAAAATGAA
TTGCACTGCAAGAAGGGATATACAAAATGACCAACCGAAAACGGAGATAC
AGACGATTTTACCGGTCGACAAAATCTCGTGATAATGAAACGGTTTACGA
ATAGCGGTCAATCTCTCATAACTCAAATTACAAAGACTCATTAATGAAGT
CTCCAGTGAAAAACCAAATATGATAGTGGCCACACGTCTTGAGAATAAAG
TTCCGCTTGTCGATGTTATGGTTCCTAGGAAGTAAAACCCCGATAGGGAA
ACCAAGAAGTCCGACACACATAACGAAACGATAAAAGCATTCACTTTGAA
CTTATAGACAATCTTTCGGGTAGCCAGTAACCATAGTGATAAAGTGTTCA
GGCAGAACCCTCCACCGTTAATAGCCGCAAATACGATTGTGAACCATGAA
GGGATTGTGTCAGTGCTTGGTAACTCCAAAGCAGAAAATCTGGGTCCGCC
ACCACCAACACTAAACATTGGCTGCGTATAATTATCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048479-exon-scaffold_142-1491911889:735890..737311 | TCONS_00048479-exon-scaffold_142-1491911889:735890..737311 | Clytia hemisphaerica | exon |
| TCONS_00048479-exon-scaffold_142-1510915933:735890..737311 | TCONS_00048479-exon-scaffold_142-1510915933:735890..737311 | Clytia hemisphaerica | exon |
| TCONS_00048479-exon-scaffold_142-1575043694:735890..737311 | TCONS_00048479-exon-scaffold_142-1575043694:735890..737311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:735890..737311 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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