TCONS_00048471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048471
Unique NameTCONS_00048471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048471 ID=TCONS_00048471|Name=TCONS_00048471|organism=Clytia hemisphaerica|type=transcript|length=822bp
TGTATGAGTGATTTCCGTGCATGTTTAAGTCTAAAAGTCGTCACTGTACT
ATGGTCCAAATTCTTTATTGCCCCCTGGTCTCCTCTAGCCTTAAATCcta
ctctaatttttttctctttcaatgACCAGGGTAACATAGTCTATATATGA
CATTATttgtctctctctctctctctctctctggtATTCGGGATAAGTTT
TTAAATCCTTCCGCACTTTGGTAGAGGCCCCTAAGCGGgtttcgtgatgg
cgtgataatAGGGACTTTTtctagcgtgattacgtgagttggaatttttt
ttctcgtgattgcgtgatgagaggtcaaaacgtgatcgtgatttgaaaga
tttttgagccgtgatgtgtgatttggactttttcaaagggatgcgtggCT
ATCCAAATCTTTTTCTGATcttcgtgatcgtgattgaagacacaAAAATG
CGTGATATCGTAAATTACCGCTGGGGGCCTTTTGGTAAATCCCGGCAAAA
TGTACCGAATATGCTAAATTTGGTTTCCTCTAGGGACCAAAATCACATTC
TCCTTGTTCTTATCCTGCTAACCGGCTTGAATTATTTAATGTAAATACTC
AAATGATTATACTGATTTTTATTATATGGATATATAGTTTTTTTGCCAAC
CgagtttgaatatttttttaatcctgtatattttattattttcgggaAAG
TTCTAtaaattattattgttattattttgtgTCTGgtcgaaacaaaagaa
aaattatttattttatttttacacaaaTTCTACTTGTTATGTCTTAAAAT
TCTCATTTAATTTCAGGCTCGA
Run BLAST on NCBI

transcript from alignment at scaffold_142:483817..484638

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048471 ID=TCONS_00048471|Name=TCONS_00048471|organism=Clytia hemisphaerica|type=transcript|length=822bp|location=Sequence derived from alignment at scaffold_142:483817..484638 (Clytia hemisphaerica)
TCGAGCCTGAAATTAAATGAGAATTTTAAGACATAACAAGTAGAAtttgt
gtaaaaataaaataaataatttttcttttgtttcgacCAGAcacaaaata
ataacaataataatttaTAGAACTTtcccgaaaataataaaatatacagg
attaaaaaaatattcaaactcGGTTGGCAAAAAAACTATATATCCATATA
ATAAAAATCAGTATAATCATTTGAGTATTTACATTAAATAATTCAAGCCG
GTTAGCAGGATAAGAACAAGGAGAATGTGATTTTGGTCCCTAGAGGAAAC
CAAATTTAGCATATTCGGTACATTTTGCCGGGATTTACCAAAAGGCCCCC
AGCGGTAATTTACGATATCACGCATTTTtgtgtcttcaatcacgatcacg
aagATCAGAAAAAGATTTGGATAGccacgcatccctttgaaaaagtccaa
atcacacatcacggctcaaaaatctttcaaatcacgatcacgttttgacc
tctcatcacgcaatcacgagaaaaaaaattccaactcacgtaatcacgct
agaAAAAGTCCCTattatcacgccatcacgaaacCCGCTTAGGGGCCTCT
ACCAAAGTGCGGAAGGATTTAAAAACTTATCCCGAATaccagagagagag
agagagagagagacaaATAATGTCATATATAGACTATGTTACCCTGGTca
ttgaaagagaaaaaaattagagtagGATTTAAGGCTAGAGGAGACCAGGG
GGCAATAAAGAATTTGGACCATAGTACAGTGACGACTTTTAGACTTAAAC
ATGCACGGAAATCACTCATACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030825XLOC_030825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048471-exon-scaffold_142-1491911889:483817..484638TCONS_00048471-exon-scaffold_142-1491911889:483817..484638Clytia hemisphaericaexon
TCONS_00048471-exon-scaffold_142-1510915933:483817..484638TCONS_00048471-exon-scaffold_142-1510915933:483817..484638Clytia hemisphaericaexon
TCONS_00048471-exon-scaffold_142-1575043694:483817..484638TCONS_00048471-exon-scaffold_142-1575043694:483817..484638Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:483817..484638 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87539	1.24163	0.822197	1.17421	5.53122	4.24639	3.28454	4.23691	1.79248	1.79371	1.78817	1.68588	0.240992	0.903084	0.358641	0.686032	0.611007	0.518115	0.878134	0.334181	0.597467	0.86754	2.40757	1.08594	1.92629	2.14167	0.788155	1.31972	1.33424	1.40849
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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