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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048456 ID=TCONS_00048456|Name=TCONS_00048456|organism=Clytia hemisphaerica|type=transcript|length=997bp
GTCGGATGTCTTTCGCTCACCTAAAGGATCGCCACAAGCAGGATCAGAGG
GGCTTATCTGCTGCCTTCGAAATTGTTTCGCCAGATTCGGTGttccagaa
gaaatttctagtGATGGAGGTCCAGAATTTGTCAGTAAAGCTACAGAAGA
TTTCCTTGCCAAATGGGGAGTTCGTCATCGCCTATCATCTGCTTACAACC
CGCAGTCAAATGGCCGAGCTGAAGTTGCTGTGAAGACTACCAAACGTCTC
CTTCGATCGAACACATCTCCATCAGGAATACTTGACAATGATCGCTTCAT
CCGCGCAATGATGCATCTCAGAAACACCCCAGATCCAGACTGCAACGTCT
CACCAGCTGAAATCGTATTCGGTCGACAACTTTGTGATGCATTTGCTTTC
GTTAACAGACTGGAGAAGTTCAACAATGACAACATCAGCCCAGTTTGGCG
TGCTGCTTGGAAGAAAAAGGAGGAGGCCCTTCGACAACGTTTCCACCGAT
CAGCCGAAGAACACAACAACCACACACGACCGCTACCTCCTCTTCGTTTC
GGCGATCGATGCTACATACAGAATCAAACCGGTCCCCATCCAAAACTCTG
GGAGCGTTCTGGTACCGTTGTGGAAGACCATGGCCACAGTAGTTACACAC
TAAAAGTCGACGGCACTGGTCGCGTCACACGTCGTAACCGTCAACATCTT
CGCCGATTCCAACCTGCTTCAACAGAAATTGTCAGCAGGCAATCATTCGT
CGGTCAGCCAGTACCCGCTTCCATTAGACATGAATCTCCACCTCCCAAGG
CACAGGAACCTGCACCGAGCGTTCCTGCGACGTCCCCATCGTCGACAGTT
CCTGCACCCATGGAAATCCGTCCCATCCCTGACGTCCCCATACAAGACGA
ACCATCCCATCCCGAAGATCAGTCACCTAACAAGAGTCCTCCCCCAGTTG
TGTCCACCCCACGACCACAACGCCAACGTCGTTCACCTCGTCGTTAT Run BLAST on NCBI protein sequence of TCONS_00048456-protein >TCONS_00048456-protein ID=TCONS_00048456-protein|Name=TCONS_00048456-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
SDVFRSPKGSPQAGSEGLICCLRNCFARFGVPEEISSDGGPEFVSKATED
FLAKWGVRHRLSSAYNPQSNGRAEVAVKTTKRLLRSNTSPSGILDNDRFI
RAMMHLRNTPDPDCNVSPAEIVFGRQLCDAFAFVNRLEKFNNDNISPVWR
AAWKKKEEALRQRFHRSAEEHNNHTRPLPPLRFGDRCYIQNQTGPHPKLW
ERSGTVVEDHGHSSYTLKVDGTGRVTRRNRQHLRRFQPASTEIVSRQSFV
GQPVPASIRHESPPPKAQEPAPSVPATSPSSTVPAPMEIRPIPDVPIQDE
PSHPEDQSPNKSPPPVVSTPRPQRQRRSPRRY Run BLAST on NCBI transcript from alignment at scaffold_142:138639..139635 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048456 ID=TCONS_00048456|Name=TCONS_00048456|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at scaffold_142:138639..139635 (Clytia hemisphaerica)
ATAACGACGAGGTGAACGACGTTGGCGTTGTGGTCGTGGGGTGGACACAA
CTGGGGGAGGACTCTTGTTAGGTGACTGATCTTCGGGATGGGATGGTTCG
TCTTGTATGGGGACGTCAGGGATGGGACGGATTTCCATGGGTGCAGGAAC
TGTCGACGATGGGGACGTCGCAGGAACGCTCGGTGCAGGTTCCTGTGCCT
TGGGAGGTGGAGATTCATGTCTAATGGAAGCGGGTACTGGCTGACCGACG
AATGATTGCCTGCTGACAATTTCTGTTGAAGCAGGTTGGAATCGGCGAAG
ATGTTGACGGTTACGACGTGTGACGCGACCAGTGCCGTCGACTTTTAGTG
TGTAACTACTGTGGCCATGGTCTTCCACAACGGTACCAGAACGCTCCCAG
AGTTTTGGATGGGGACCGGTTTGATTCTGTATGTAGCATCGATCGCCGAA
ACGAAGAGGAGGTAGCGGTCGTGTGTGGTTGTTGTGTTCTTCGGCTGATC
GGTGGAAACGTTGTCGAAGGGCCTCCTCCTTTTTCTTCCAAGCAGCACGC
CAAACTGGGCTGATGTTGTCATTGTTGAACTTCTCCAGTCTGTTAACGAA
AGCAAATGCATCACAAAGTTGTCGACCGAATACGATTTCAGCTGGTGAGA
CGTTGCAGTCTGGATCTGGGGTGTTTCTGAGATGCATCATTGCGCGGATG
AAGCGATCATTGTCAAGTATTCCTGATGGAGATGTGTTCGATCGAAGGAG
ACGTTTGGTAGTCTTCACAGCAACTTCAGCTCGGCCATTTGACTGCGGGT
TGTAAGCAGATGATAGGCGATGACGAACTCCCCATTTGGCAAGGAAATCT
TCTGTAGCTTTACTGACAAATTCTGGACCTCCATCactagaaatttcttc
tggaaCACCGAATCTGGCGAAACAATTTCGAAGGCAGCAGATAAGCCCCT
CTGATCCTGCTTGTGGCGATCCTTTAGGTGAGCGAAAGACATCCGAC Coding sequence (CDS) from alignment at scaffold_142:138639..139635 >TCONS_00048456 ID=TCONS_00048456|Name=TCONS_00048456|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_142:138639..139635 (Clytia hemisphaerica)
ATAACGACGAGGTGAACGACGTTGGCGTTGTGGTCGTGGGGTGGACACAA
CTGGGGGAGGACTCTTGTTAGGTGACTGATCTTCGGGATGGGATGGTTCG
TCTTGTATGGGGACGTCAGGGATGGGACGGATTTCCATGGGTGCAGGAAC
TGTCGACGATGGGGACGTCGCAGGAACGCTCGGTGCAGGTTCCTGTGCCT
TGGGAGGTGGAGATTCATGTCTAATGGAAGCGGGTACTGGCTGACCGACG
AATGATTGCCTGCTGACAATTTCTGTTGAAGCAGGTTGGAATCGGCGAAG
ATGTTGACGGTTACGACGTGTGACGCGACCAGTGCCGTCGACTTTTAGTG
TGTAACTACTGTGGCCATGGTCTTCCACAACGGTACCAGAACGCTCCCAG
AGTTTTGGATGGGGACCGGTTTGATTCTGTATGTAGCATCGATCGCCGAA
ACGAAGAGGAGGTAGCGGTCGTGTGTGGTTGTTGTGTTCTTCGGCTGATC
GGTGGAAACGTTGTCGAAGGGCCTCCTCCTTTTTCTTCCAAGCAGCACGC
CAAACTGGGCTGATGTTGTCATTGTTGAACTTCTCCAGTCTGTTAACGAA
AGCAAATGCATCACAAAGTTGTCGACCGAATACGATTTCAGCTGGTGAGA
CGTTGCAGTCTGGATCTGGGGTGTTTCTGAGATGCATCATTGCGCGGATG
AAGCGATCATTGTCAAGTATTCCTGATGGAGATGTGTTCGATCGAAGGAG
ACGTTTGGTAGTCTTCACAGCAACTTCAGCTCGGCCATTTGACTGCGGGT
TGTAAGCAGATGATAGGCGATGACGAACTCCCCATTTGGCAAGGAAATCT
TCTGTAGCTTTACTGACAAATTCTGGACCTCCATCactagaaatttcttc
tggaaCACCGAATCTGGCGAAACAATTTCGAAGGCAGCAGATAAGCCCCT
CTGATCCTGCTTGTGGCGATCCTTTAGGTGAGCGAAAGACATCCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048456-exon-scaffold_142-1491911889:138639..139635 | TCONS_00048456-exon-scaffold_142-1491911889:138639..139635 | Clytia hemisphaerica | exon |
| TCONS_00048456-exon-scaffold_142-1510915933:138639..139635 | TCONS_00048456-exon-scaffold_142-1510915933:138639..139635 | Clytia hemisphaerica | exon |
| TCONS_00048456-exon-scaffold_142-1575043694:138639..139635 | TCONS_00048456-exon-scaffold_142-1575043694:138639..139635 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:138639..139635 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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