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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048453 ID=TCONS_00048453|Name=TCONS_00048453|organism=Clytia hemisphaerica|type=transcript|length=1265bp
CATAGCTTGTGCTCCACCCGATCAGATTTCATTCGCTCGGAACAACTTGA
AGTGTCAACCACACAAGTCCAGAATGGTGAAAATCATACAACTTCTGAAA
ATCCTAATCTTGTTGGTTTTGATAAACCTATTAAGAGCATCTCCTCCAAG
ATGCGATGGTACAGATTGCAATCATTTTCAAGACGTGTATAATCATTGTT
GGAAAAGCGATTTCGATTATTGTTCTGAATGGGTACAAAACACCAACCCA
AACTTTGTAGAAAACGCTGACATCTTCTGCAATAGAGAAGCTTCGAAATA
TTGCCAATACAAGAAACATCAACTTGAAGGTTGTACACAAGAAGTTGAAC
ATGTCTGCCCAAAGCCAAAAACCACTACCGAAGAAGAACTAGCGTTAGAA
AGAGATTGCCAAGACCGTGCAACCGAGAGATGCCATCATCTGTTAGATTC
ATTGGATCACTATGTGGAATGCTGGAAAGGAGAATTAGATTCATGCTTTG
AATCACTCGTATACAGTCGCTATGAAAGCCCAAACTGCAAGACAGTTGAT
CGACATTTTAATGTTTGCATTGCTCCACAGCTTTGCCAAATGGTTATCTA
CCCAGTCTTAGAATGCGGATACTAAATTGGTACCTTTCTCCACTTGTATA
AATAATGACTTTGCCTTGATTGTAAACAATACTTACCTAACGAATAGACT
ATATGTTTTGGATAACttataacacccctgtatcacagacaCATCTGGCA
AAAAATTCgtccccggtaggaaaataccTTGGAATTTTAGCCACTCTGGG
AAATTGACTTAATTTTCATCACCACTCAAAattgaatgtttgaaaattgc
actccaaaaccatccccattggattttttaacctttgaacaatagaattt
atatccccattaagatttcaataggaatttttatccccattgagaaaaaa
agttccaccggggctgtgaaacaggggtgtcttATATAACTTATTAAAAT
GTTTATAATCAGTTTTTAACAGAAGCATTCTCTTTGTTGAAGctcaccca
gctggcacacaacgttgctttaacgtttatataacgttatatggacgttg
agaacattagatggacgttgaaacaacgttgtgtgccagctgggcatgCA
TAACAGCTTGTGTAGATATAGTTTTATTGTATTGTATTTCTTTATCTGAT
CGCCACTCAAAAGTACTTCGTCAATATAATTACAGCTCTGTCTATTTACC
TCTGTAGAAAAAAAT Run BLAST on NCBI protein sequence of TCONS_00048453-protein >TCONS_00048453-protein ID=TCONS_00048453-protein|Name=TCONS_00048453-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
IACAPPDQISFARNNLKCQPHKSRMVKIIQLLKILILLVLINLLRASPPR
CDGTDCNHFQDVYNHCWKSDFDYCSEWVQNTNPNFVENADIFCNREASKY
CQYKKHQLEGCTQEVEHVCPKPKTTTEEELALERDCQDRATERCHHLLDS
LDHYVECWKGELDSCFESLVYSRYESPNCKTVDRHFNVCIAPQLCQMVIY
PVLECGY Run BLAST on NCBI transcript from alignment at scaffold_142:94025..95289 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048453 ID=TCONS_00048453|Name=TCONS_00048453|organism=Clytia hemisphaerica|type=transcript|length=1265bp|location=Sequence derived from alignment at scaffold_142:94025..95289 (Clytia hemisphaerica)
ATTTTTTTCTACAGAGGTAAATAGACAGAGCTGTAATTATATTGACGAAG
TACTTTTGAGTGGCGATCAGATAAAGAAATACAATACAATAAAACTATAT
CTACACAAGCTGTTATGcatgcccagctggcacacaacgttgtttcaacg
tccatctaatgttctcaacgtccatataacgttatataaacgttaaagca
acgttgtgtgccagctgggtgagCTTCAACAAAGAGAATGCTTCTGTTAA
AAACTGATTATAAACATTTTAATAAGTTATATaagacacccctgtttcac
agccccggtggaactttttttctcaatggggataaaaattcctattgaaa
tcttaatggggatataaattctattgttcaaaggttaaaaaatccaatgg
ggatggttttggagtgcaattttcaaacattcaatTTTGAGTGGTGATGA
AAATTAAGTCAATTTCCCAGAGTGGCTAAAATTCCAAggtattttcctac
cggggacGAATTTTTTGCCAGATGtgtctgtgatacaggggtgttataaG
TTATCCAAAACATATAGTCTATTCGTTAGGTAAGTATTGTTTACAATCAA
GGCAAAGTCATTATTTATACAAGTGGAGAAAGGTACCAATTTAGTATCCG
CATTCTAAGACTGGGTAGATAACCATTTGGCAAAGCTGTGGAGCAATGCA
AACATTAAAATGTCGATCAACTGTCTTGCAGTTTGGGCTTTCATAGCGAC
TGTATACGAGTGATTCAAAGCATGAATCTAATTCTCCTTTCCAGCATTCC
ACATAGTGATCCAATGAATCTAACAGATGATGGCATCTCTCGGTTGCACG
GTCTTGGCAATCTCTTTCTAACGCTAGTTCTTCTTCGGTAGTGGTTTTTG
GCTTTGGGCAGACATGTTCAACTTCTTGTGTACAACCTTCAAGTTGATGT
TTCTTGTATTGGCAATATTTCGAAGCTTCTCTATTGCAGAAGATGTCAGC
GTTTTCTACAAAGTTTGGGTTGGTGTTTTGTACCCATTCAGAACAATAAT
CGAAATCGCTTTTCCAACAATGATTATACACGTCTTGAAAATGATTGCAA
TCTGTACCATCGCATCTTGGAGGAGATGCTCTTAATAGGTTTATCAAAAC
CAACAAGATTAGGATTTTCAGAAGTTGTATGATTTTCACCATTCTGGACT
TGTGTGGTTGACACTTCAAGTTGTTCCGAGCGAATGAAATCTGATCGGGT
GGAGCACAAGCTATG Coding sequence (CDS) from alignment at scaffold_142:94025..95289 >TCONS_00048453 ID=TCONS_00048453|Name=TCONS_00048453|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_142:94025..95289 (Clytia hemisphaerica)
TTAGTATCCGCATTCTAAGACTGGGTAGATAACCATTTGGCAAAGCTGTG
GAGCAATGCAAACATTAAAATGTCGATCAACTGTCTTGCAGTTTGGGCTT
TCATAGCGACTGTATACGAGTGATTCAAAGCATGAATCTAATTCTCCTTT
CCAGCATTCCACATAGTGATCCAATGAATCTAACAGATGATGGCATCTCT
CGGTTGCACGGTCTTGGCAATCTCTTTCTAACGCTAGTTCTTCTTCGGTA
GTGGTTTTTGGCTTTGGGCAGACATGTTCAACTTCTTGTGTACAACCTTC
AAGTTGATGTTTCTTGTATTGGCAATATTTCGAAGCTTCTCTATTGCAGA
AGATGTCAGCGTTTTCTACAAAGTTTGGGTTGGTGTTTTGTACCCATTCA
GAACAATAATCGAAATCGCTTTTCCAACAATGATTATACACGTCTTGAAA
ATGATTGCAATCTGTACCATCGCATCTTGGAGGAGATGCTCTTAATAGGT
TTATCAAAACCAACAAGATTAGGATTTTCAGAAGTTGTATGATTTTCACC
ATTCTGGACTTGTGTGGTTGACACTTCAAGTTGTTCCGAGCGAATGAAAT
CTGATCGGGTGGAGCACAAGCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048453-exon-scaffold_142-1491911889:94025..95289 | TCONS_00048453-exon-scaffold_142-1491911889:94025..95289 | Clytia hemisphaerica | exon |
| TCONS_00048453-exon-scaffold_142-1510915933:94025..95289 | TCONS_00048453-exon-scaffold_142-1510915933:94025..95289 | Clytia hemisphaerica | exon |
| TCONS_00048453-exon-scaffold_142-1575043694:94025..95289 | TCONS_00048453-exon-scaffold_142-1575043694:94025..95289 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:94025..95289 . |
Blast
The following BLAST results are available for this feature:
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