TCONS_00048446 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048446
Unique NameTCONS_00048446
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length808

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048446 ID=TCONS_00048446|Name=TCONS_00048446|organism=Clytia hemisphaerica|type=transcript|length=808bp
ATAGATTATCAACATCATGGATATCCGAAGGGCACCAACCATAGATGAAA
TGAAAGATGTATATATTGTTCAAACTTTAATGGAAACAGATTTGTATAAA
ctacttaaaactcaaaagttaagCAATGACCACATTTGCTACTTTTTATA
CCAAATTCTTCGAGGGTTGAAATATATCCATTCTGCAAACGTATTACACA
GGGATTTGAAACCAAGTAATTTATTACTGAACACAACATGtgatttaaag
ATTTGTGACTTTGGTTTGGCTAGAGTTGCTGATCCAGACCATGATCACAC
AGGGATCCTTACAGAATATGTTGCCACAAGGTGGTATCGGGCACCTGAAA
TCATGTTGAATTCTAAAGGATATACAAAATCCATTGATATTTGGAGCGTG
GGCTGTATTTTAGCTGAGATGCTAATGAACAAACCGCTTTTCCCTGGAAA
ACATTaTTTGGATCAATTAAATCTGATTTTGGACGTTCTTGGATCCCCAG
ATAATAACGCCCTTCAATTCATCAAAAATGAGAAGGCGAGAAGTTACTTG
ATGGGATTACCAGTCAAAAAAAGGAAGCAATGGCCCACTCTTTTCCCAGA
TGCATCACCAAACGCTTTGGATCTGTTGGACAAGTTGTTGACATTCAACC
CAGACCATCGAGTAACTGTTGAACAAGCTCTCGCTCATCCATACTTGGAA
CAATATTATGACCCTCAAGATGagCCTGTTGCCGAGCAACCGTTCACATT
TGATACAGAGCTTGATGACTTGCCAAAAGAAAGACTCAAAGGTGATATTC
TTATTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_142:991459..997680-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048446 ID=TCONS_00048446|Name=TCONS_00048446|organism=Clytia hemisphaerica|type=transcript|length=6222bp|location=Sequence derived from alignment at scaffold_142:991459..997680- (Clytia hemisphaerica)
ATAGATTATCAACATCATGGATATCCGAAGGGCACCAACCATAGATGAAA
TGAAAGATGTGTATCTTTTCCTCAAAACATTGAACATGTTGAAATATTCT
TGTTGTTATATAAATTTCAAAGAGTGCCTTTTTTCTTTTGATGAAAATTT
ATGATAAGTATTCTTCATGCAACATTCTTCCTGAGATTCAGATTTGAAAT
CCTGAAGCTGTTTTGTCCCCCCCCCCCTTTTCAACTATTGCATGCATGAG
TCTGATCTTTGTTTAAATGTGTATTCCCTCTGTGTGGCATGATTTAAAGA
AGATGCAATTATGAGTAGATTTCAGTTACTTAAAAAAGCAAAGTAGATCT
GTTCATGCAGGCATTCATCAGTCTGAAAGATAATGCTAACACTAACACTA
ATTTACATGCGTTAACTAGAAACTAAATTTCTCGAGAAAATGTTCTACAG
TTTTTATTCCTTGACTACCTATCATAACTCCTTTAGATATATTGTTCAAA
CTTTAATGGAAACAGATTTGTATAAACTACTTAAAACTCAAAAGTTAAGC
AATGACCACATTTGCTACTTTTTATACCAAATTCTTCGAGGGTTGAAATA
TATCCATTCTGCAAACGTATTACACAGGGATTTGAAACCAAGTAATTTAT
TACTGAACACAACATGTGATTTAAAGGTAATTTTTTTCTTTTTCATTAAC
CCACTTAATAGTATCCATAAATTTTGCCTTGCATTTGACTATTTTGGTAT
CTTAGACTGCTATTCGATCCCAATAAAAAATAGACCCCTGTTTTGTGACA
TTTTTACTGTCAGCCACTAAGTTGACCATAACTTGGGAAAATTATGGCTT
ACACTTAGGATTGCTTTGATGGTTATTAAGCTGAGGAAATTAGCTATCCA
TAACATAAAGGGCGAATTTTTGTTGCTTACTTAAAGGGGAGTTACAAGCA
AATGAAGTGTGGGGGAAAAATGTGGCTTACTGGTCATGTGGCTTACCCTA
GTCAAGAAATTTTGAAGGCTGAGTTCTCAATAATGGAAACAGTCAGAAAT
ATACTTTCTTTTCAGCATTGACAGCAAAGGGCTACATTTTTCATTAGCTG
CACTGATTTGTGGCTTACAGTTTGTTAAGTGGGCAAAAATGTGGCTTACA
CAAGGGAAATTAGGTGAATAGGTGAATATAGGTGAATAGTTGAAATATAG
GTGAAATTTTATGTCTCACATTTTTTAAGTTTTTGGCACTCAATCATTAA
AGTATAACACCTGTAAGTGTAAAAAATTACAAAAATTTTGTTGTAAGAAC
AATTTTGTGGCTTACAAAGTCACATTAAAAATTATCGAAAAGTAAGCCAC
AAAAAACTACATTTTTAATAGCTAGAAAGTATGTACATTTAACATTTTTT
GAAAAATTCAAACTTTTCTCTGTCAAGTTAAGAAAGTCCCATTTTAAGAT
CTCTTATCTAATTTGTGTGGCTTACATTTCTAAAAAAGATACAAATTTTG
AGTTGAAGCCACATTTTTAGCTCAATTAACGAAGAAAAAAAATTTTATTC
ATAATGTCTTAGTATTTCCCACAACATTGTAAAATTTCACGACTTATCGA
TTAAGACTTCATCAGCTATGACAAAAAGTTGTTTTTGGGCATTTTTCAAA
ATGTCACACTATTTTTGATTGGGATCATTCTTCTAGTGGAGAAATCCAGG
GAAAAGAGTGGCACCCTCCCAGTGCTGCAAATAACGGCCGGTGACCGGTA
ATTAACGGTCATTTCATAGTTTCTACCGGCCATTCTGAAGCTCAGTTTTT
CATTTTGTCCTGTTAAAATTTGAAGATTAGAGGCTTAGATTAACACTTAA
TAGCGCTTCATTAAAATAGGTGTTTAGCCAATCTAATAATGCAATAAGTC
AATCTGTAATAACAGACTACAAAGATGGTTCCGCCAGACCCCCTGCTCGT
TACACTCGAAAAATTACCGGCCAACTGAAATTTCCCTATTTGCAGCACTG
CCCTCCCCTACCTTCCGGTAGATAGCTATCAAAAGAGGAGCCTTCGGGTC
GCCTCCGAATGCGGTCGCAGGCTTACTTTACTTACTTATTCTTTTATAGT
ATCAATTATTTGTTCTTGTCATATTGACATTATTGACATTATATCATCCT
AGGTGATGACTTCATAATAACTTTAAAGTCAAACACAGATTTTGAAAGTA
TTACAAAATTATTAAATCATATTTTTTATAACAATAATAAACTCTATTTT
GTAATTGCTTTATTCATATAATATATTTATTTATATAAAATGCTTATTCT
TTTAAGATTTGTGACTTTGGTTTGGCTAGAGTTGCTGATCCAGACCATGA
TCACACAGGGATCCTTACAGAATATGTTGCCACAAGGTGGTATCGGGCAC
CTGAAATCATGTTGAATTCTAAAGGATATACAAAATCCATTGATATTTGG
AGCGTGGGCTGTATTTTAGCTGAGATGCTAATGAACAAACCGCTTTTCCC
TGGAAAACATTGTAAGTGCTAATTTGTTTTCTTTTTAGACATGGTGTCCA
GCTAAGAACAATACTATAGAATTTACTCTTTTAAAGAAGAGGATTTTTTA
TGGGACACACTTGATTTAGCATTTTGACAATACCTGCTAAATTATTAGTT
TCTGTCTTGTGGAAGCTCAAAATTGATTTGAAATAATTCTATTTCAGAAC
ATCATTTTGATGAAAAGCCATTTTATTCTCTCTCTCTCTCTAGATTTGGA
TCAATTAAATCTGATTTTGGACGTTCTTGGATCCCCAGATAATAACGCCC
TTCAATTCATCAAAAATGAGAAGGTGCGATCAATCATCACTATTTATATT
CATTTTTTATTCAATTGAATCTGAGCTTTTATTCAACCACACACATACTG
GAGTTGAGTCGAGCTATTAGCTATAAATTAGATTTTGCTATTAGACTATT
TGACAAAACTGGCTAAATGATATTTCTTAATTGCATATATTTTTAAGTGA
AGATGTGGCAAATTTCATGCAGTTTAGGCAGGTTTAGGTTATGCTATTTT
GACCCCCGAAATGCTTAGGTGATAAATGAGTTTTGTCTTGTATAATAGTC
CATCCATTTTCATTTGGATTTTTAGTTTTAATGACTTTTCAGTGAAAACC
TTTTGACTCCACTATTAAAAACAATGAGAATTAAGTGCCTTTAAAAAAGC
ATTCTACAGATAATAGTGAATGGAGTGCAACGTTAGCTTCCATTGCACAA
TCTCCATTTTCATTATTGCAGGCGAGAAGTTACTTGATGGGATTACCAGT
CAAAAAAAGGAAGCAATGGCCCACTCTTTTCCCAGATGCATCACCAAACG
GTAGGAATGATTTGTTCAAATAGGCACAGATTTAGGCAAAAAATTCTCAC
AAGCTACAAATAGTTGAATCACTATTTTATCTTTATAAATTAATAAATTT
TAACTAAAAGAGTTTGAATTGAATTTAATCAAGCAATTTTGTGGTCGTTG
AAAAATTAAAACTGAGTGGAAATTTTAGTGGAGAAAAATATATTTTAAAT
CCAAACGATGATAAGTGGTGAATAAGGAACATTTTTATCCTATTTCAGCT
TTGGATCTGTTGGACAAGTTGTTGACATTCAACCCAGACCATCGAGTAAC
TGTTGAACAAGCTCTCGCTCATCCATACTTGGAACAATATTATGACCCTC
AAGATGAGGTTTGTTCTTTTTTTGTAACATGATGATCTTTTCCAGGTCTG
CTCATTATTGAGACACATAATCTTCGAGTTATATGATCGAGTTATATGAT
CGAGTTACATGGCTTCGAGTTATGAAATCTTTGAGTTATGTAACGCGAAT
TTTTTAACTCAGTTCTGTTATTGACAATTTTCCTCTCGAGTTAAATCAAG
GAAAAAAAACTCGAAATCATTTATACGGCATTTTGATTTCAAGTTAAAAA
TATTCATATAAAGCTGTAAATTCTATGATACGTATTTTCATATGAACATA
ATTATACAATAGATTATTGCTTCGAGGCCAAACATTAGAGAAAAATCAGA
GAACATTTTCAGGCTTATCAGCCTCCAAAACATGCAAATTCTTAGGAGAT
TTCATAAAAAACAGGTTTTTCCTGGTTTTTCATGTATATGTTCTTCCTGG
TTTTTCATGTATAGGTTCTTCATTAATACTCCCCAAATATTGAGAATAAG
ATTTTTTTTAGACCTGAAATCCAAAAAATTAACACTCCTTTTGACGTTCG
TATAGTGCATCGAAACAATTTTCCTAGAAGCTTCTTGAATAACATAGAAA
TTGTATTTCATTGTGAACAACTTATGATTTTGGAGAAAAAACAATTGCAT
ATTATAGGTTTTNTAATAGTCCGTCCATTTTCATTTGGATTTTTAGTTTT
AATGACTTTTCAGTGAAAACCTTTTGACTCCACTATTAAAAACAATGAGA
ATTAAGTGCCTTTAAAAAAGCATTCTACAGAAAATAGTGAATTGAGTGCA
ACGTTAGCTTCCATTGCACAATCTCCATTGTTTTTGTTGCAGGCGAGAAG
TTACTTGATGGGATTACCAGTCAAAAAAAGGAAGCAATGGCCCACTCTTT
TTCCAGATGCATCACCAAATGGTAGGAATGATTTGTTCAAATAGGCACAG
ATTTAGGCAAAAAAAATCTCACAAGCTACAAATAGTTAAATCACTATTTT
AACTTTATATTCACCTATATTTCAACGCTCTTTTCAAAGTAGCTGTCAGT
AAAATAAATTTTAACTAAAAGAGTTTGAATTGAATTTAATCAAGCAATTT
TGTGGTCGTTGAAAAATTAAAACTGTGTGGAAATTTTAGTGGAGAAAAAT
ATATTTTAAATCCAAACGATGATAAGTGGTGAATAAAGAACATTTTTATC
CTATTTCAGCTTTGGATCTGTTGGACAAGTTGTTGACATTCAACCCAGAC
CATCGAGTAACTGTTGAACAAGCTCTCGCTCATCCATACTTGGAACAATA
TTATGACCCTCAAGATGAGGTTTGTTCTTTTTTTGTAACATGATGATCTT
TTCCAGGTCTGCTCATTATTGAGACACATAATCTTCGAGTTATATGATCG
AGTTATATGATCGAGTTATGAAATCTTTGAGTTAAGGCCCGTAACGCGAA
TTTTTTAACTCAGTTCTGTTATTGACAATTTTCCTCTCGAGTTAAATCAA
GGAAAAAAAACTCGAAATCATTTATACGGCATTTTAATTTCAAGTTAAAA
ATATTCATATAAAGCTGTAAATTCTATGATACGTATTTTCATATGAACAT
AATTATACAATAGATTATTGCTTCGAGGCCAAACATTAGAGAAAAATCAG
AGAATATTTTCAGGCTTATCAGCCTCCAAAACATGCAAATTCTTAGGAGA
TTTCATAAAAAACAGGTTTTTCCTGGTTTTTCATGTATAGGTTCTTCATT
AATACTCCCCAAATATTGAGAATAAGAATTTTTTTAGACCTGAAATCCAA
AAAATTAACACTCCTTTTGACGTTCGTATAGTGCATCGAAACAATTTTCC
TAGAAGCTTCTTGAATAACATAGAAATTGTATTTCATTGTGAACAACTTA
TGATTTTGGAGAAAAAACAATTGCATATTATAGGTTTTTCAGTTTTGGTT
TTGAGATTGAAATCATTTCATTGACAGTTCGTTTGCCGCTTAGTTTAAAA
ATAAGGGGATATGTTTTTACTCTACTGCCATAATAGAGTTAAAAATACTG
CTCTGTCTGGGTCCCCCAGGTAATATATAGAGAAATGATGTCGTAAATCA
TTAAAAAAATTGACATCTTGTCTGATGAAAATTATAATTCAGTCAAATTG
CTGACGCAATTGTCTTAGCCGTATTTACTCTCTAAATCCTTTAATACCTT
GTCAGACAAATATTTTGTTTGAATTGATATACAAAGATCAATATTATTCA
GTTATGTTTTTTTCTACATTCACCCCTCAACCTTTTGAACTTTCTAATAT
TGTCTTTTTAGCCTGTTGCCGAGCAACCGTTCACATTTGATACAGAGCTT
GATGACTTGCCAAAAGAAAGACTCAAAGGTGATATTCTTATTTTGCTTCC
GAAAGTAATTTTGTTATCTATGATTAGAATATTTCGTTTAGTATGAAATT
NAACCGTTCACATTTGATACAGAGCTTGATGACTTGCCAAAAGAAAGACT
CAAAGGTGATATTCTTATTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030801XLOC_030801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048446-exon-scaffold_142-1575043694:997621..997680TCONS_00048446-exon-scaffold_142-1575043694:997621..997680Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:997005..997194TCONS_00048446-exon-scaffold_142-1575043694:997005..997194Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:995170..995374TCONS_00048446-exon-scaffold_142-1575043694:995170..995374Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:994858..994937TCONS_00048446-exon-scaffold_142-1575043694:994858..994937Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:994331..994409TCONS_00048446-exon-scaffold_142-1575043694:994331..994409Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:992662..992771TCONS_00048446-exon-scaffold_142-1575043694:992662..992771Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:991647..991669TCONS_00048446-exon-scaffold_142-1575043694:991647..991669Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1575043694:991459..991519TCONS_00048446-exon-scaffold_142-1575043694:991459..991519Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:997621..997680TCONS_00048446-exon-scaffold_142-1510915933:997621..997680Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:997005..997194TCONS_00048446-exon-scaffold_142-1510915933:997005..997194Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:995170..995374TCONS_00048446-exon-scaffold_142-1510915933:995170..995374Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:994858..994937TCONS_00048446-exon-scaffold_142-1510915933:994858..994937Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:994331..994409TCONS_00048446-exon-scaffold_142-1510915933:994331..994409Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:992662..992771TCONS_00048446-exon-scaffold_142-1510915933:992662..992771Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:991647..991669TCONS_00048446-exon-scaffold_142-1510915933:991647..991669Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1510915933:991459..991519TCONS_00048446-exon-scaffold_142-1510915933:991459..991519Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:997621..997680TCONS_00048446-exon-scaffold_142-1491911889:997621..997680Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:997005..997194TCONS_00048446-exon-scaffold_142-1491911889:997005..997194Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:995170..995374TCONS_00048446-exon-scaffold_142-1491911889:995170..995374Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:994858..994937TCONS_00048446-exon-scaffold_142-1491911889:994858..994937Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:994331..994409TCONS_00048446-exon-scaffold_142-1491911889:994331..994409Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:992662..992771TCONS_00048446-exon-scaffold_142-1491911889:992662..992771Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:991647..991669TCONS_00048446-exon-scaffold_142-1491911889:991647..991669Clytia hemisphaericaexon
TCONS_00048446-exon-scaffold_142-1491911889:991459..991519TCONS_00048446-exon-scaffold_142-1491911889:991459..991519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:991459..997680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
90.3945	88.8719	132.988	137.231	94.1003	72.7877	88.6402	94.3752	50.9796	66.4737	38.3769	36.3934	41.0529	37.3677	34.8238	37.646	63.8572	63.0564	43.3683	43.2855	63.5603	65.3072	75.3595	76.0869	38.5331	38.0798	33.5068	23.1846	45.05	45.2843
Blast
[Close]
BLAST of TCONS_00048446 vs. Swiss-Prot (Human)
Match: MK01 (Mitogen-activated protein kinase 1 OS=Homo sapiens GN=MAPK1 PE=1 SV=3)

HSP 1 Score: 442.58 bits (1137), Expect = 9.885e-156
Identity = 215/262 (82.06%), Postives = 228/262 (87.02%), Query Frame = 2 
Query:    5 IINIMDIRRAPTIDEMKDVYIVQTLMETDLYKLLKTQKLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGILTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLMNKPLFPGKHYLDQLNLILDVLGSPDNNALQFIKNEKARSYLMGLPVKKRKQWPTLFPDASPNALDLLDKLLTFNPDHRVTVEQALAHPYLEQYYDPQDEPVAEQPFTFDTELDDLPKERLK 790
            II I DI RAPTI++MKDVYIVQ LMETDLYKLLKTQ LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTG LTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEML N+P+FPGKHYLDQLN IL +LGSP    L  I N KAR+YL+ LP K +  W  LFP+A   ALDLLDK+LTFNP  R+ VEQALAHPYLEQYYDP DEP+AE PF FD ELDDLPKE+LK
Sbjct:   83 IIGINDIIRAPTIEQMKDVYIVQDLMETDLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYDPSDEPIAEAPFKFDMELDDLPKEKLK 344
The following BLAST results are available for this feature:
BLAST of TCONS_00048446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MK019.885e-15682.06Mitogen-activated protein kinase 1 OS=Homo sapiens... [more]
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