TCONS_00048416 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048416
Unique NameTCONS_00048416
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048416 ID=TCONS_00048416|Name=TCONS_00048416|organism=Clytia hemisphaerica|type=transcript|length=581bp
AATCTATCCCTCCTAAGAATGATAGATAACACAGAAATTATCCTCTGCGG
AGAAGAACTTTTGGAAGACTGGGCACCATATGTTGCTTACGATTATTAGC
CAGCCGCATGAGCAAGTTCTTTTACAAGTGAAACTTTGGTAGACAGAATC
TACTTACAAACTTTTATCAGGCGTGCACACAGTTTCGTGTCTTCAGACTT
AAAAATATGCGTTACGTGGCCGCTTACTTGCTTGCCGTTCTCGGTGGAAA
TGAAACCCCATCAGCTAATGATTTGAAGAAGATCCTTGAATCATCTGGAG
TTGGATTTGATGCTGAAAATGCTGACAATGTTGTCTCCAAATTAGCTGGA
AAGACTATTGCTGAAcTCATCGAAGAAGGAAGCAAAAAGATGGCAAGTAT
GCCAGCTGGTGGAGCTGCCCCCGCTGCTGGTGGAGCCGGAGGTGCTGCCG
CTGGTGGTGAAGCGGAGGCtgaaaagaaagaggagaagaaGGAAGAATCC
GAGGAATCTGACGACGACATGGGATTCGGTCTCTTTGATTAAGATCTTGA
AAAGATACATTTTTGATAAACAGAAAAATTA
Run BLAST on NCBI

protein sequence of TCONS_00048416-protein

>TCONS_00048416-protein ID=TCONS_00048416-protein|Name=TCONS_00048416-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MRYVAAYLLAVLGGNETPSANDLKKILESSGVGFDAENADNVVSKLAGKT
IAELIEEGSKKMASMPAGGAAPAAGGAGGAAAGGEAEAEKKEEKKEESEE
SDDDMGFGLFD
Run BLAST on NCBI

transcript from alignment at scaffold_142:907980..912309-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048416 ID=TCONS_00048416|Name=TCONS_00048416|organism=Clytia hemisphaerica|type=transcript|length=4330bp|location=Sequence derived from alignment at scaffold_142:907980..912309- (Clytia hemisphaerica)
AATCTATCCCTCCTAAGAATGATAGATAACACAGAAATTATCCTCTGCGG
AGAAGAACTTTTGGAAGACTGGGCACCATATGTTGCTTACGATTATTAGC
CAGCCGCATGAGCAAGTTCTTTTACAAGTGAAACTTTGGTAGACAGAATC
TACTTACAAACTTTTATCAGGCGTGCACACAGTTTCGTGTCTTCAGACTT
AAAAATAGTAAGAAATTATGAATATTTCATGGTGTTTTACTTCATGGATA
CATTTGGTTGATATGATGATTGAAATTAAAGCATAGTTCAGCAGAAATCA
TCATGTTGAAGCATATTTTCGCCCCTATCTGATCAATCAATCTGTTTGTA
TATACTTTTGTACTGGGTCTTGATTTCTTTAGGTAAGTCGAATTTAACTC
TCTTGCTTCTTTTCTCTCTAGTGCGTTACGTGGCCGCTTACTTGCTTGCC
GTTCTCGGTGGAAATGAAACCCCATCAGCTAATGATTTGAAGAAGATCCT
TGAATCATCTGGAGTTGGATTTGATGCTGAAAATGCTGACAATGTTGTCT
CCAAATTAGCTGGAAAGACTATTGCTGAAGTAAGTATGACTATCAGCCGA
AATATATTATTCTGAGTGAAGATTCCAGCTTCTACTTACTTGATAAAGTC
TAAACTTTTGCTCAGGCTGAGTATGACATGATACACAAATTACATTATTA
TTAACAGGCTAGAGTGTCTCATTCAGGGGTCACTCACATATTGATTCGTC
AAATTGATGCAAAGCGGTGGGGATTAGGGTCTGTGATGCTAAGAAATTTC
ACCTGAAATATCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAGGAAC
TCGATAAGGAACTTTGAGACTGAAATTTTCTGTAAAAATAAGGAACTCCA
GGCTCAGAGCAAAGTTAAGGTTCCTTATAAAAAAAAAAACGTGTACTATG
ACATGAAAATTTGCTGCTCGCATAATCCCATTGGTTCGTGCTATGATATC
ATTACATCATATTTTCATTGTTTGCGCGATCGAGCGAACCATATCGCACA
AGTGGGCAAAGAAGGTGGTACGCCTACAGCACGGCACGGACCTAGCGCCA
AGTGGAGCATTTAATTTCTTTTTAAATAAAGGTCATTAGTTAAAAGAACA
CAATACACGCACTGGTACAACCAAGTACGGGCTTTGCGACGGAACGGGAA
AACTTTGATGAAAAAAGGCTGCAAATTTTGGTATACAGTACATCAGTACA
TCGCTTGACGTTATCTGTGGGTGGTGGGGGGGTTCAGAGGATAACGTCAA
TTTGACGTTTTACGTTGTCAAATGAATATGGACGGGTTTGTTTTAGGGAA
GAATTCAGTTTTAAAATATAACTGATGATATCCAACCTCTTTCCTATAGC
ATGTTGCATTTGAAAAAACTCCTTTTTATGGAATTCAAGGACCTTGGTAA
GACTGCTACACAAATGAGAAACCTATTTACAGAATTGATTTCTGTCTGAT
TTAGCTTTAAAATCTATTTTTTCTGGCAATTTTTACACCAACTGACCTAC
ACAAAAACAACCTGAACACAAGTTAACTGTGATCATAGTCCGTATAAGAA
ACACCGGTCTGGAAGCCTTTTGTTTTATCCAGTTTCTTAATTGAACTTGC
ATTGAGAAATTAGTTTGTTTTGCTAAATTTTTGGATCATGGGGTTTTAAA
ATCTTAAACCAATCCCAATAGGAATATTTGGTAACGTGATCAAAAACTGA
GCAAATCGGTTTTTATCTTATGATATCAACAAAGGGAAAAGCTAAAAAAA
GTTAAAACAATAAGCTTCCAGACAAGTGTTTTTCATATGGACTATGCTGT
GATCATGTCTTATACTTCAGGAAAAATGTTAAGGCTTTGTCTATAATCTA
AGTCATCATTTACTGTATATCTATCTATCTATATACAGTATTTAAGTAGT
GACAAAATATACATGTTTGTTCTCCCTACATATAAAACCATTTATCAAAA
AATATATATAAATGAAGATGAGTTAATAATAAAATAGTTTGTTTATTTAT
TCAAAAATAATTCATAATATAAAATTCTAAAAAAGCTCTTAAACCTAGGA
TATAAGTGGTAAAAGTCGAGAATATCAAAACTGAGAACAGCTACCTAATC
AGGTTGATATTACGTGATTGAACTGGATTGAATTTAGCACTTTTGATATT
GCTGACTTGCAAAATTAATCCAGACTTTTCAGGGTAAAATTTAATGTAAA
TATACCACCATAACAAAAAAGGCCACTTTGAACAAATTTTTGCCTGATTC
ATGAAATAAAAATCATGGCATATTTTGAATGATAGGCTGATGAACAAAAA
TTTATCCAGAAAATCTGGTGAATTTTTGGCTCATGACATTATATCTTGTT
AAAATATATCCCCATTTAAGTAGAGAATCTTGTTCTATCTATGATAATTC
TATGAAATTCTGAAGTGATGATTGAAATTAAAGCATAGTTCAGCAGAAAT
TATTATGTTGAAATATATTTTCGCCCCTATCTGATCAGAATTTTATACAG
AGTGCAAAGTTAATTAAAGATAAATTCGACATGCCCTTATTCAAACTTTT
CTTCTATTTTTCAGCTCATCGAAGAAGGAAGCAAAAAGATGGCAAGTATG
CCAGCTGGTGGAGCTGCCCCCGCTGCTGGTGGAGCCGGAGGTGCTGCCGC
TGGTGGTGAAGCGGAGGCTGAAAAGAAAGAGGAGAAGAAGGAAGAATCCG
AGGAATCTGACGACGACATGGGATTCGGTCTCTTTGATTAAGATCTTGAA
AAGATACATTTTTGATAAACAGAAAAATTA

Coding sequence (CDS) from alignment at scaffold_142:907980..912309-

>TCONS_00048416 ID=TCONS_00048416|Name=TCONS_00048416|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at scaffold_142:907980..912309- (Clytia hemisphaerica)
CTCATCGAAGAAGGAAGCAAAAAGATGGCAAGTATGCCAGCTGGTGGAGC
TGCCCCCGCTGCTGGTGGAGCCGGAGGTGCTGCCGCTGGTGGTGAAGCGG
AGGCTGAAAAGAAAGAGGAGAAGAAGGAAGAATCCGAGGAATCTGACGAC
GACATGGGATTCGGTCTCTTTGATTAATGCGTTACGTGGCCGCTTACTTG
CTTGCCGTTCTCGGTGGAAATGAAACCCCATCAGCTAATGATTTGAAGAA
GATCCTTGAATCATCTGGAGTTGGATTTGATGCTGAAAATGCTGACAATG
TTGTCTCCAAATTAGCTGGAAAGACTATTGCTGAAACTCATCGAAGAAGG
AAGCAAAAAGATGGCAAGTATGCCAGCTGGTGGAGCTGCCCCCGCTGCTG
GTGGAGCCGGAGGTGCTGCCGCTGGTGGTGAAGCGGAGGCTGAAAAGAAA
GAGGAGAAGAAGGAAGAATCCGAGGAATCTGACGACGACATGGGATTCGG
TCTCTTTGATTAATGCGTTACGTGGCCGCTTACTTGCTTGCCGTTCTCGG
TGGAAATGAAACCCCATCAGCTAATGATTTGAAGAAGATCCTTGAATCAT
CTGGAGTTGGATTTGATGCTGAAAATGCTGACAATGTTGTCTCCAAATTA
GCTGGAAAGACTATTGCTGAAACTCATCGAAGAAGGAAGCAAAAAGATGG
CAAGTATGCCAGCTGGTGGAGCTGCCCCCGCTGCTGGTGGAGCCGGAGGT
GCTGCCGCTGGTGGTGAAGCGGAGGCTGAAAAGAAAGAGGAGAAGAAGGA
AGAATCCGAGGAATCTGACGACGACATGGGATTCGGTCTCTTTGATTAAT
GCGTTACGTGGCCGCTTACTTGCTTGCCGTTCTCGGTGGAAATGAAACCC
CATCAGCTAATGATTTGAAGAAGATCCTTGAATCATCTGGAGTTGGATTT
GATGCTGAAAATGCTGACAATGTTGTCTCCAAATTAGCTGGAAAGACTAT
TGCTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030798XLOC_030798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048416-proteinTCONS_00048416-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048416-exon-scaffold_142-1575043694:912103..912309TCONS_00048416-exon-scaffold_142-1575043694:912103..912309Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1575043694:911731..911888TCONS_00048416-exon-scaffold_142-1575043694:911731..911888Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1575043694:907980..908195TCONS_00048416-exon-scaffold_142-1575043694:907980..908195Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1510915933:912103..912309TCONS_00048416-exon-scaffold_142-1510915933:912103..912309Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1510915933:911731..911888TCONS_00048416-exon-scaffold_142-1510915933:911731..911888Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1510915933:907980..908195TCONS_00048416-exon-scaffold_142-1510915933:907980..908195Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1491911889:912103..912309TCONS_00048416-exon-scaffold_142-1491911889:912103..912309Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1491911889:911731..911888TCONS_00048416-exon-scaffold_142-1491911889:911731..911888Clytia hemisphaericaexon
TCONS_00048416-exon-scaffold_142-1491911889:907980..908195TCONS_00048416-exon-scaffold_142-1491911889:907980..908195Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:907980..912309 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2260.37	2216.87	2779.92	2881.88	1646.75	1306.57	2132.25	2270.3	5198.52	4507.29	4858.29	6429.29	7575.5	7313.46	6917.79	6817.93	7222.56	7373.09	3621.02	3817.88	5839.71	5585.14	3776.28	3618.9	3094.68	3151.32	4851.63	4674.94	3771.56	3689.59
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027534Ribosomal_L12
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006414 translational elongation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048416 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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