|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048399 ID=TCONS_00048399|Name=TCONS_00048399|organism=Clytia hemisphaerica|type=transcript|length=1008bp
GATCCCCTGTTCGCTCGTTGTGGAATTCACATCAAACCAGTTGGGTGTTT
CGCTGATTTTTCATCCGATCCAGCGATGCCTTACATCATCGAAAGTTTCC
GCCCTGGAAGTCCTTACAACTATGGAAATACAATTGATTGGAACAATTAC
GAAAAGACCTTGAATGACCTACTATGTTCTTGCTTGAACCGTGCAAAAGA
CAGAGGGATGAAATATATCGGACATCAATTTTACGGTGAATGTTGGGGCT
CTATGCAACCTACTTACAACCGGTACGGCCACAGTGATCGGTGCATCAAC
ACTGAATACAAAAAGGAATGTTACGGCACCGGAAGTCGTTCAGATATTTG
CATGGGACAAGACCATACCAATtatgtttatgaaattttgtaaataaaga
aatgaaattttgattttaatataAGGTTGAGAAATTTCGAGCTTTAAAGC
CAAAACATGtatttaacatgttcttattttcacccttttgtgggtatttt
tgtccattttcctaagaaattcggTGTTTTAAAGTCCTCAAAGTTTTCGA
TCATCGAagctttttgttcttatatagtttgtgcttataaaaacatgtac
atTTACTTTTACATCTAAGCTGGATGTTCGACAACCGTAACATGTTTTAG
CTGCCCTTTAGAGAGTTAGAGTGTTAGAACCTGGGTGTCTagaacttatt
tttttcttaggcTATCTCGATTTCTACGACCTTCTATTCCTTTACCATCA
AAGTGAAACCTATATATTACTCTTATAATATTTTAGATAATATGTTTATT
TTAACGTCATGGCTAACCCACAGAAAGATATGTATTTTTCTATACCATCA
GCGCTATCAAACGTAAAACTTTGACCTGTTTAATAAGATAGTACAGTAGC
AGACAATGACATGGTGTTTATTGAAATCTCAATATTTGGTTCTTCATCAA
ATATATTTGatagaagatttttttaagtGTTAACTTGTCGATATATGATC
TAATTGCC Run BLAST on NCBI protein sequence of TCONS_00048399-protein >TCONS_00048399-protein ID=TCONS_00048399-protein|Name=TCONS_00048399-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
DPLFARCGIHIKPVGCFADFSSDPAMPYIIESFRPGSPYNYGNTIDWNNY
EKTLNDLLCSCLNRAKDRGMKYIGHQFYGECWGSMQPTYNRYGHSDRCIN
TEYKKECYGTGSRSDICMGQDHTNYVYEIL Run BLAST on NCBI transcript from alignment at scaffold_142:851906..853648- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048399 ID=TCONS_00048399|Name=TCONS_00048399|organism=Clytia hemisphaerica|type=transcript|length=1743bp|location=Sequence derived from alignment at scaffold_142:851906..853648- (Clytia hemisphaerica)
GATCCCCTGTTCGCTCGTTGTGGAATTCACATCAAACCAGTTGGGTGTTT
CGCTGATTTTTCATCCGATCCAGCGATGCCTTACATCATCGAAAGTTTCC
GCCCTGGAAGTCCTTACAACTATGGAAATACAATTGATTGGAACAATTAC
GAAAAGACCTTGAATGAGTATGTTACCTCAAGCTAGCCCGTAGTAGCCTG
GGGTCTTTTTAAGGGCTCTAGTATAGTCAGAAAATTGATTTTAGTATCTG
AACATAAAAGTTATGTTTTAGATTCTTTAACACTTTAAACAATAAATTGC
CTTTATAAAATGCTTTTTAATCAAACCCCTTAGTGTAATTAAGAACTTAA
TTGCAAAAATGACGTTATGAGCTTTAAAAAGACGTTAACAATATGTTGCA
TCACCTTCTTTTATAAAAAGTGCTAGAAAAGACATTTTAAACACGGCAAT
TATGAAAAATTCACTATGGTCATAGCTCTTAAGACTTTTTGATAGTCTTG
ATTGCGCGATTGAATACTCTTTTCTAGCTAGTCCCTGATCAATTCACCAA
AGAAAAGAATGCTTCTTCTTGGACGATAAAACAGTTTTTGTGCAGTTTGA
AATATAATAGGTTACTTAGTAAAATATCGATGGTTGGCCATGCCTTATAA
AAGAATACTTCCCTTAAAACGCTCCAGCTCTTGAAATGAGTTCCATGCTA
ATTCATGCAATGTTAACGATACACCATTGCTTCGTCGTGTAGTGAGCATC
GGGTCAATAGTGTCTGGTTAGTGCTTTGACTTAACATAGAATAACATAGA
ATAGGTAACTATTCCGGGGAAAAGACTCAAGCCGTCCACATTGGTGGGAT
CATGCTTTTTTTCTATTGAATTGAGCTCTAAACAAAGTGTTCACTTTTTT
AGCCTACTATGTTCTTGCTTGAACCGTGCAAAAGACAGAGGGATGAAATA
TATCGGACATCAATTTTACGGTGAATGTTGGGGCTCTATGCAACCTACTT
ACAACCGGTACGGCCACAGTGATCGGTGCATCAACACTGAATACAAAAAG
GAATGTTACGGCACCGGAAGTCGTTCAGATATTTGCATGGGACAAGACCA
TACCAATTATGTTTATGAAATTTTGTAAATAAAGAAATGAAATTTTGATT
TTAATATAAGGTTGAGAAATTTCGAGCTTTAAAGCCAAAACATGTATTTA
ACATGTTCTTATTTTCACCCTTTTGTGGGTATTTTTGTCCATTTTCCTAA
GAAATTCGGTGTTTTAAAGTCCTCAAAGTTTTCGATCATCGAAGCTTTTT
GTTCTTATATAGTTTGTGCTTATAAAAACATGTACATTTACTTTTACATC
TAAGCTGGATGTTCGACAACCGTAACATGTTTTAGCTGCCCTTTAGAGAG
TTAGAGTGTTAGAACCTGGGTGTCTAGAACTTATTTTTTTCTTAGGCTAT
CTCGATTTCTACGACCTTCTATTCCTTTACCATCAAAGTGAAACCTATAT
ATTACTCTTATAATATTTTAGATAATATGTTTATTTTAACGTCATGGCTA
ACCCACAGAAAGATATGTATTTTTCTATACCATCAGCGCTATCAAACGTA
AAACTTTGACCTGTTTAATAAGATAGTACAGTAGCAGACAATGACATGGT
GTTTATTGAAATCTCAATATTTGGTTCTTCATCAAATATATTTGATAGAA
GATTTTTTTAAGTGTTAACTTGTCGATATATGATCTAATTGCC Coding sequence (CDS) from alignment at scaffold_142:851906..853648- >TCONS_00048399 ID=TCONS_00048399|Name=TCONS_00048399|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_142:851906..853648- (Clytia hemisphaerica)
CCTACTATGTTCTTGCTTGAACCGTGCAAAAGACAGAGGGATGAAATATA
TCGGACATCAATTTTACGGTGAATGTTGGGGCTCTATGCAACCTACTTAC
AACCGGTACGGCCACAGTGATCGGTGCATCAACACTGAATACAAAAAGGA
ATGTTACGGCACCGGAAGTCGTTCAGATATTTGCATGGGACAAGACCATA
CCAATTATGTTTATGAAATTTTGTAAGATCCCCTGTTCGCTCGTTGTGGA
ATTCACATCAAACCAGTTGGGTGTTTCGCTGATTTTTCATCCGATCCAGC
GATGCCTTACATCATCGAAAGTTTCCGCCCTGGAAGTCCTTACAACTATG
GAAATACAATTGATTGGAACAATTACGAAAAGACCTTGAATGACCTACTA
TGTTCTTGCTTGAACCGTGCAAAAGACAGAGGGATGAAATATATCGGACA
TCAATTTTACGGTGAATGTTGGGGCTCTATGCAACCTACTTACAACCGGT
ACGGCCACAGTGATCGGTGCATCAACACTGAATACAAAAAGGAATGTTAC
GGCACCGGAAGTCGTTCAGATATTTGCATGGGACAAGACCATACCAATTA
TGTTTATGAAATTTTGTAAGATCCCCTGTTCGCTCGTTGTGGAATTCACA
TCAAACCAGTTGGGTGTTTCGCTGATTTTTCATCCGATCCAGCGATGCCT
TACATCATCGAAAGTTTCCGCCCTGGAAGTCCTTACAACTATGGAAATAC
AATTGATTGGAACAATTACGAAAAGACCTTGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048399-exon-scaffold_142-1575043694:853482..853648 | TCONS_00048399-exon-scaffold_142-1575043694:853482..853648 | Clytia hemisphaerica | exon |
| TCONS_00048399-exon-scaffold_142-1575043694:851906..852746 | TCONS_00048399-exon-scaffold_142-1575043694:851906..852746 | Clytia hemisphaerica | exon |
| TCONS_00048399-exon-scaffold_142-1510915933:853482..853648 | TCONS_00048399-exon-scaffold_142-1510915933:853482..853648 | Clytia hemisphaerica | exon |
| TCONS_00048399-exon-scaffold_142-1510915933:851906..852746 | TCONS_00048399-exon-scaffold_142-1510915933:851906..852746 | Clytia hemisphaerica | exon |
| TCONS_00048399-exon-scaffold_142-1491911889:853482..853648 | TCONS_00048399-exon-scaffold_142-1491911889:853482..853648 | Clytia hemisphaerica | exon |
| TCONS_00048399-exon-scaffold_142-1491911889:851906..852746 | TCONS_00048399-exon-scaffold_142-1491911889:851906..852746 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:851906..853648 - |
Blast
The following BLAST results are available for this feature:
|
