TCONS_00048397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048397
Unique NameTCONS_00048397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048397 ID=TCONS_00048397|Name=TCONS_00048397|organism=Clytia hemisphaerica|type=transcript|length=1777bp
cgttttttttataaggaaccttaactttgctctgagcctggagttcctta
tttttacagagaatttaagcctcaaagttccttatcgagttccttaaaac
ttgttttcttattctcagcctgagcagttcctaaacaattccttattttt
tggaccattttcagcctcgagttccttataaacgtgttccttatataaaa
aaaaacgtgtattttgacAGCATAAGAAAGCTCTAGCCTAAACAAGGGGT
CAAAAAAGGTTACAATGTTATTTGAAAGGATAAGTACCTACTCAAAACAG
TAACAGtgtcattttttcaaataaagataTATACACATGCACTTCAATTT
TGTGACGTATTTCTAAACTCAGTGTAAAGTGTGATAAGTATTTTCCGGCA
ATAGAATTTTCTCGACTTAACAAGGATCTACTGCTAAAAGAGATCAGTCG
AAAAAGGGATTGGTGTGGGAAAGTGTGATTTCTCTGCTGGCAGTTAGCAA
ATATGATTTCACTTTGCTTTATTGTTGTGCTTTGTTCTCAGCTTGCCGTC
GTCTCAACATCAGCGGATTTTGATTTTGGTTCAATTGACACGTCAGACAA
AAAGGTCGATGCGAGCCTTCAAAGTTTCTTCGAGATGCTCAAAAAAGACA
ACGAGCGTAAACAACAACTATGTATGAAAAAGTATAGTCCGAAACGTTTC
AGATGTTGTGAGGGGCGAGCGCATTTCATCCCTTCTAGAAGAATTAAATA
TTTGTGCTGCAGAGGTAAAGCGTATGTACCGACCTCACATTTGTGTTGTG
GAATGGAAGTGCAACGGAAAGTGGTGAGCGGTCAGCGAACTGGGATCAAG
AAATGCTGTGCGGGTAAAAATCCATATGAGCCAGGCAAAGAATTATGCTG
CAACAAAGAAGTGATAAGCAGTAAGCGCTATGGGTGTTGTCGTAACAAAA
AATACGAACGAGCATTTGCGACTTGTTGCTCGGGCAAGATCACACCCATC
CTTTCAATGAACCCAAATGCAGAGATTGGTTGCTGCGGTGACGAAGCGTA
CGACATGAAGGAAAAGATCTGTTGTGCAGGAAAATTGGGTGATTTCGTCG
ATGATAGCATAGGAGTAGGACAACATCAGCTTCGACAGCCTCAACTTCCT
CACATCTCTGAAAGTGGTCGACAACACACAAGATGTTGCAATAATCAAGC
ATATGATTCACGAACTAAAATGTGTTGCAATGGTttgaagaaaaaagaag
ccGGTCTCACTGAGTGCTGTTTTGGGCGGATGATAGACCCTACAAAAGTC
ATCTGTTGTAACTACGGTATTCAAGAGCTTAAATACGGAAAGAACACCGG
ATGTTGTCGTTTTGATAATTACCGGAAAGGTTTGCAAGATTATTTCGAGA
TCTATAACACGGAAACACAGATTTGTTGTGGCGGGAAATTGGAGAAGCGG
GAGCATGGGGCGAGCACCAGTTGTTGTATACAGAGATCATACAATGTTGA
TACACATGTTTGCTGCAAAGAAAAGGCGAGAGCAAGGCTTTACAAAAAGA
ATCCAAATAAATGTGAAAATTACCGATGTTGCGGAAGGAGAATGTATTGC
AATGATAAATTGATTTGTTGTGCTGGTGATGATACAAGAGGCCGGTACAG
GGAGAGAATTCACAAGAAAACGGAGCACTCAAGATGTTGTGGTTTGAGAG
CATACAACCGTGTCTCACACAAGTGTGACACCGGGAACAAGGTGAGCGAA
CTGAGTTAGAAGAAAGCAATCACTGCC
Run BLAST on NCBI

protein sequence of TCONS_00048397-protein

>TCONS_00048397-protein ID=TCONS_00048397-protein|Name=TCONS_00048397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=418bp
MISLCFIVVLCSQLAVVSTSADFDFGSIDTSDKKVDASLQSFFEMLKKDN
ERKQQLCMKKYSPKRFRCCEGRAHFIPSRRIKYLCCRGKAYVPTSHLCCG
MEVQRKVVSGQRTGIKKCCAGKNPYEPGKELCCNKEVISSKRYGCCRNKK
YERAFATCCSGKITPILSMNPNAEIGCCGDEAYDMKEKICCAGKLGDFVD
DSIGVGQHQLRQPQLPHISESGRQHTRCCNNQAYDSRTKMCCNGLKKKEA
GLTECCFGRMIDPTKVICCNYGIQELKYGKNTGCCRFDNYRKGLQDYFEI
YNTETQICCGGKLEKREHGASTSCCIQRSYNVDTHVCCKEKARARLYKKN
PNKCENYRCCGRRMYCNDKLICCAGDDTRGRYRERIHKKTEHSRCCGLRA
YNRVSHKCDTGNKVSELS
Run BLAST on NCBI

transcript from alignment at scaffold_142:837538..844265-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048397 ID=TCONS_00048397|Name=TCONS_00048397|organism=Clytia hemisphaerica|type=transcript|length=6728bp|location=Sequence derived from alignment at scaffold_142:837538..844265- (Clytia hemisphaerica)
CGTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTTCCTTA
TTTTTACAGAGAATTTAAGCCTCAAAGTTCCTTATCGAGTTCCTTAAAAC
TTGTTTTCTTATTCTCAGCCTGAGCAGTTCCTAAACAATTCCTTATTTTT
TGGACCATTTTCAGCCTCGAGTTCCTTATAAACGTGTTCCTTATATAAAA
AAAAACGTGTATTTTGACAGCATAAGAAAGCTCTAGCCTAAACAAGGGGT
CAAAAAAGGTTACAATGTTATTTGAAAGGATAAGTACCTACTCAAAACAG
TAACAGTGTCATTTTTTCAAATAAAGATATATACACATGCACTTCAATTT
TGTGACGTATTTCTAAACTCAGTGTAAAGTGTGATAAGTATTTTCCGGCA
ATAGAATTTTCTCGACTTAACAAGGATCTACTGCTAAAAGAGATCAGTCG
AAAAAGGGATTGGTGTGGGAAAGTGTGATTTCTCTGCTGGCAGTTAGCAA
ATATGATTTCACTTTGCTTTATTGTTGTGCTTTGTTCTCAGCTTGCCGTC
GTCTCAACATCAGGTACGTGGTCCAGCCTAAAAGTAGGGTAATGTTTGTT
GTCTCATAATGTATTTAAAATAGAGAATTACACTTTATTCTAATGTTGTA
TTTCTTATGNCGTTTGTTGTCTCATAATGTATCTTACATTTACAATAGAG
AATTACACTTTATTCTAATGTTGTATTTCTTATGCCGTCAATCTAACTTT
GAACAAAAGGTTGTGTTGTTTCAAAGATAAGAAATAATAGAAAAGCGTCC
AGAATCGTTCAAAGACGAAAAAGCTGAAAGTTTTCGGTAGAACCAGCCAT
TATCCACAGCCCACAGATAATCCTTAATCTATTAGTTAATTTTTCGTATG
TTACTAACGATGTCGCTAAATATCGACTATGACTTATAGAAATTTCTTAA
ATTCAAACACTAAAGAAAGATTTCCAAAATTCATAAATTTGTATTGGATT
GAAAACAAATTAAGCAAAATGCATTCTTCTTTAGCGGATTTTGATTTTGG
TTCAATTGACACGTCAGACAAAAAGGTCGATGCGAGCCTTCAAAGTTTCT
TCGAGATGCTCAAAAAAGACAACGAGCGTAAACAACAACTATGTATGAAA
AAGTATAGTCCGAAACGTTTCAGATGTTGTGAGGGGCGAGCGCATTTCAT
CCCTTCTAGAAGAATTAAATATTTGTGCTGCAGAGGTAAAGCGTATGTAC
CGACCTCACATTTGTGTTGTGGAATGGAAGTGCAACGGAAAGTGGTGAGC
GGTCAGCGAACTGGGATCAAGAAATGCTGTGCGGGTAAAAATGTAAGTTA
TCTGAAAAGCACTGATATTATTTTTTACTGCCATCCAACTGGCAAAAAAC
TTTGTTTCAACGTTAATCTAAAGTTATATGGACGTTTTGATGGTCGTTTG
TTTAGATAAACGTTGAAAAAACATTGTGTGTCACCTGGGTAGTATAGACT
TTTGATAAAACTGCCAAGAAAAAAACACAAGGGACAAAATTTTCTGAGTC
TGCCAGAATTTTTGTACACGTACACTTTATAAGAACATCCAAAAATTTTG
AAGCCTTTAAATGTTCTTAACTTTTTGAGTTTTAAGGTGGTAGTCTACCG
CCAGATTTCAAAAGTCAAAAAATCACATTTTTTGCAATAACTCAAGAACT
TCTTTACATTTCGTAATGAAATTTTCAGGAAATGTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGTAATCTTGCGATAACATCAAATTTGGGTGAA
AACAGCCACATAAGTGTGACAAAATGTTCATTGAAATTCCAGCATGACTC
TCTGTAGACATGGAAACTTTTCTAGAACATATTTTTATTCACATAGACTT
GAATTGACAATGAGCTAGCTTGATTGAAGGCGGCGCCTTTGCTTCGGTTA
CCGCCTAGGCGGTTATGAATGGCTGGTGTCAGATGAGAATGTGTGTCTCC
AGAAGTTAGGTCAAGTTCATTATAATGCACATTTCTATCTCTGTTACATC
ATGTTGTGCTTGGAAATATCTCANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAATATCTCAGTTAC
ATTTAAATCCACTACAAAACATTATGTGAGCCACCAAAAGCACACTGTCT
ATGCTCAAAACAAAATGCCGACAACTTAAATGATTTTCGCAGAAATCCAG
CAACACAACCAATGTAGAGCAACTTTATAGATTCTGTAGAGTCCATTCTT
CATTTAACTAAATCATTTCAATCAAGTAGATTAAGTTTTGATCTAAAAAT
TGCCAAGAAATCTGCAGAATCATGCTTACAGCTTGCTTTTCAGCTGGTTT
TGATGTGTTACACTACTGCAGCTACCATCTTTAATTTCAAGGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTCCTTAGCAACGGGATTTTTTCTGTTGCTAGGGCGATTTTTCAAGCAC
CCAACAGGATAAAAATGCTCACTGCGGCCTGAATGATAAAGATATAGCTC
TGAAAATTTCAGGAGATGTTCAGAAAGACCTAAGGATCTCAAAACACCCA
AAAACCAGAATTCGACAATTTTTTCGATGATTTTTTATTTTTGGGTAGAC
TACCACCTTAAGCCTAAAAATGTTCTTAACGTGTTCTTATTTTTGTCATT
TTTTGCCATTTTTAGTGAGTATTTTTTGTCACTTTTCTTAAGAAATTGGG
TGTTTTAGAGTCCAAAGTTAGTGAAACAAGCAAACCACTTCTTTAGCTGA
GTTTTTAACAACGAAGTCACCTTTTGTGCTATTTTTCTTTATCGATTTCA
GCCATATGAGCCAGGCAAAGAATTATGCTGCAACAAAGAAGTGATAAGCA
GTAAGCGCTATGGGTGTTGTCGTAACAAAAAATACGAACGAGCATTTGCG
ACTTGTTGCTCGGGCAAGATCACACCCATCCTTTCAATGAAGTAAGTTCT
GAAAGGTGGTAATAATGACTGAATGCAAACCAGCTTTCACAGTTTATCAG
TCAGGCAAAAATAGCGCCTACCTTTTTTCGTGAATACATTTTTAGAACGG
CACGGTATAGGCCAGTACAGGTGGAGAAAATCAGCTCTTAAAATCAATTT
CTAAATTATTAAACATTTGCTTGCTCTGATGAATCATATTTTTGACAAAT
TTATAGCATAGAGATATCTTTATCTGTAGCAGTGCGCATGCTTATTCAGT
CATCATTCTTTCGTCAGCCCAAATGCAGAGATTGGTTGCTGCGGTGACGA
AGCGTACGACATGAAGGAAAAGATCTGTTGTGCAGGAAAATTGGGTGATT
TCGTCGATGATAGCATAGGAGTAGGACAACATCAGCTTCGACAGCCTCAA
CTTCCTCACATCTCTGAAAGTGGTCGACAACACACAAGATGTTGCAATAA
TCAAGCATATGATTCACGAACTAAAATGTGTTGCAATGGTGTAAGTCATA
CTACTCGCTCATTTTTAATCTGTTCATTCATTTTCATTTTTCATAAATAA
AGTTCCAAAATAGGTGCCAAATGTACACCCCCTTCTCATAGCAGATCCAC
TGGGAACGCTTCCCACTGGAAAAATTGGCCAAAATATTGTCCGAATTTAA
GGGTTTAGGTATATTGATGTTCTATTTTATTCAATTGCCATAATATGATA
TCTATAGGAGATTCATAAGTAAAAATTCTAAATATTTCGTATTCCCATTG
CTACAGTTGAAGAAAAAAGAAGCCGGTCTCACTGAGTGCTGTTTTGGGCG
GATGATAGACCCTACAAAAGTCATCTGTTGTAACTACGGTATTCAAGAGC
TTAAATACGGAAAGAACACCGGATGTTGTCGTTTTGATAATTACCGGAAA
GGTTTGCAAGATTATTTCGAGATCTATAACACGGAAACACAGATTTGTTG
TGGCGGGAAATTGGAGAAGCGGGAGCATGGGGCGAGCACCAGTTGTTGTA
TACAGAGATCATACAATGTTGATACACATGTTTGCTGCAAAGAAAAGGCG
AGAGCAAGGGTAGGTTCATGTTATTCGATATTTTACACGGGTGAGTTTAT
GTATTCGAGATAAATCGATGGGGACGGTATAAAATAAAGTTGAAATGTAG
CCAAAATCCCGTTCCAATGGTATAAAAACCATCGTCTGTTTAGGTGAGCA
AAGGTTATATAGAGCTGTACATGAGCGATTGATTTTGTTTTTGCTTACCA
TCACCCTTTAATATCCTCCGATACATAAACTCACTACTGAAGTACACAAG
AAAGTATATTCTCTGCGGCCGTAGTTTAAGGGTAGAGCAATCGAAGAAGG
AGAAAGGGTGACGCCCTCCCCTATTTACGGATGAATAGCTCTAATGAAAG
AGGAGCCCTTTTGATCGTAGTTAAAGGCTTACTTACTGTATTCTTTACCA
CAACATGAAGTCAGAATTGGCCGAAAACAGAGCATCATGGTTTAACAGGT
TTATTCCATCCGCCCAGTCAACGAAACTTGGTATTTATTCAAACAATGGT
GTACATTTTCCCCTCGAAATAATTGGATCCGAAAGCAAAAGGTGCATTGA
ATGCTTCCACTGCAAAGAATAATTTGTATCATATTTATGTAAAAATATTT
TTCATGGAAAATTAATGTGACATCCACCCAATCTCTGTCCTGTAGTTTCT
GTAGCAAACTTTGATAGATCTAATCCTTTATACAGGTTTTTAATGCTTGT
CAAAGCTCCGTAACTTCCACCATTATGGAAGCAAATGTTCGAGTATGTAA
TGGTGATCCATTTCTCTAATCGAACGTTTGCTTCCTTAATGGTAGCCTGG
GAATCCATGCTATGATTTCTTCTTTGATAAACTGATGGCGAAATGTATAG
CATGGTATGGGTTGAGAGTTTGAATTTCTCAGATCCTAATAACGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCCACTGTAAAAAATGTGAGTCCAATATTGGA
CTCACAGCTCGAACCCGTCTTGTGTACATCAAATTATAAAAAAACACACG
ACGGGTCTCCTGTCTACCTTAATGGCGGATGTGGATGTTACGTAACTTAG
ACTAAAACATGAAACTTCTTTAAATTTTCATTTTACAGCTTTACAAAAAG
AATCCAAATAAATGTGAAAATTACCGATGTTGCGGAAGGAGAATGTATTG
CAATGATAAATTGATTTGTTGTGCTGGTGATGATACAAGAGGCCGGTACA
GGGAGAGAATTCACAAGAAAACGGAGCACTCAAGATGTTGTGGTTTGAGA
GCATACAACCGTGTCTCACACAAGTGTGACACCGGGAACAAGGTGAGCGA
ACTGAGTTAGAAGAAAGCAATCACTGCC

Coding sequence (CDS) from alignment at scaffold_142:837538..844265-

>TCONS_00048397 ID=TCONS_00048397|Name=TCONS_00048397|organism=Clytia hemisphaerica|type=CDS|length=7542bp|location=Sequence derived from alignment at scaffold_142:837538..844265- (Clytia hemisphaerica)
CTTTACAAAAAGAATCCAAATAAATGTGAAAATTACCGATGTTGCGGAAG
GAGAATGTATTGCAATGATAAATTGATTTGTTGTGCTGGTGATGATACAA
GAGGCCGGTACAGGGAGAGAATTCACAAGAAAACGGAGCACTCAAGATGT
TGTGGTTTGAGAGCATACAACCGTGTCTCACACAAGTGTGACACCGGGAA
CAAGGTGAGCGAACTGAGTTAGTTGAAGAAAAAAGAAGCCGGTCTCACTG
AGTGCTGTTTTGGGCGGATGATAGACCCTACAAAAGTCATCTGTTGTAAC
TACGGTATTCAAGAGCTTAAATACGGAAAGAACACCGGATGTTGTCGTTT
TGATAATTACCGGAAAGGTTTGCAAGATTATTTCGAGATCTATAACACGG
AAACACAGATTTGTTGTGGCGGGAAATTGGAGAAGCGGGAGCATGGGGCG
AGCACCAGTTGTTGTATACAGAGATCATACAATGTTGATACACATGTTTG
CTGCAAAGAAAAGGCGAGAGCAAGGCCCAAATGCAGAGATTGGTTGCTGC
GGTGACGAAGCGTACGACATGAAGGAAAAGATCTGTTGTGCAGGAAAATT
GGGTGATTTCGTCGATGATAGCATAGGAGTAGGACAACATCAGCTTCGAC
AGCCTCAACTTCCTCACATCTCTGAAAGTGGTCGACAACACACAAGATGT
TGCAATAATCAAGCATATGATTCACGAACTAAAATGTGTTGCAATGGTCC
ATATGAGCCAGGCAAAGAATTATGCTGCAACAAAGAAGTGATAAGCAGTA
AGCGCTATGGGTGTTGTCGTAACAAAAAATACGAACGAGCATTTGCGACT
TGTTGCTCGGGCAAGATCACACCCATCCTTTCAATGAACGGATTTTGATT
TTGGTTCAATTGACACGTCAGACAAAAAGGTCGATGCGAGCCTTCAAAGT
TTCTTCGAGATGCTCAAAAAAGACAACGAGCGTAAACAACAACTATGTAT
GAAAAAGTATAGTCCGAAACGTTTCAGATGTTGTGAGGGGCGAGCGCATT
TCATCCCTTCTAGAAGAATTAAATATTTGTGCTGCAGAGGTAAAGCGTAT
GTACCGACCTCACATTTGTGTTGTGGAATGGAAGTGCAACGGAAAGTGGT
GAGCGGTCAGCGAACTGGGATCAAGAAATGCTGTGCGGGTAAAAATATGA
TTTCACTTTGCTTTATTGTTGTGCTTTGTTCTCAGCTTGCCGTCGTCTCA
ACATCAGCTTTACAAAAAGAATCCAAATAAATGTGAAAATTACCGATGTT
GCGGAAGGAGAATGTATTGCAATGATAAATTGATTTGTTGTGCTGGTGAT
GATACAAGAGGCCGGTACAGGGAGAGAATTCACAAGAAAACGGAGCACTC
AAGATGTTGTGGTTTGAGAGCATACAACCGTGTCTCACACAAGTGTGACA
CCGGGAACAAGGTGAGCGAACTGAGTTAGTTGAAGAAAAAAGAAGCCGGT
CTCACTGAGTGCTGTTTTGGGCGGATGATAGACCCTACAAAAGTCATCTG
TTGTAACTACGGTATTCAAGAGCTTAAATACGGAAAGAACACCGGATGTT
GTCGTTTTGATAATTACCGGAAAGGTTTGCAAGATTATTTCGAGATCTAT
AACACGGAAACACAGATTTGTTGTGGCGGGAAATTGGAGAAGCGGGAGCA
TGGGGCGAGCACCAGTTGTTGTATACAGAGATCATACAATGTTGATACAC
ATGTTTGCTGCAAAGAAAAGGCGAGAGCAAGGCCCAAATGCAGAGATTGG
TTGCTGCGGTGACGAAGCGTACGACATGAAGGAAAAGATCTGTTGTGCAG
GAAAATTGGGTGATTTCGTCGATGATAGCATAGGAGTAGGACAACATCAG
CTTCGACAGCCTCAACTTCCTCACATCTCTGAAAGTGGTCGACAACACAC
AAGATGTTGCAATAATCAAGCATATGATTCACGAACTAAAATGTGTTGCA
ATGGTCCATATGAGCCAGGCAAAGAATTATGCTGCAACAAAGAAGTGATA
AGCAGTAAGCGCTATGGGTGTTGTCGTAACAAAAAATACGAACGAGCATT
TGCGACTTGTTGCTCGGGCAAGATCACACCCATCCTTTCAATGAACGGAT
TTTGATTTTGGTTCAATTGACACGTCAGACAAAAAGGTCGATGCGAGCCT
TCAAAGTTTCTTCGAGATGCTCAAAAAAGACAACGAGCGTAAACAACAAC
TATGTATGAAAAAGTATAGTCCGAAACGTTTCAGATGTTGTGAGGGGCGA
GCGCATTTCATCCCTTCTAGAAGAATTAAATATTTGTGCTGCAGAGGTAA
AGCGTATGTACCGACCTCACATTTGTGTTGTGGAATGGAAGTGCAACGGA
AAGTGGTGAGCGGTCAGCGAACTGGGATCAAGAAATGCTGTGCGGGTAAA
AATATGATTTCACTTTGCTTTATTGTTGTGCTTTGTTCTCAGCTTGCCGT
CGTCTCAACATCAGCTTTACAAAAAGAATCCAAATAAATGTGAAAATTAC
CGATGTTGCGGAAGGAGAATGTATTGCAATGATAAATTGATTTGTTGTGC
TGGTGATGATACAAGAGGCCGGTACAGGGAGAGAATTCACAAGAAAACGG
AGCACTCAAGATGTTGTGGTTTGAGAGCATACAACCGTGTCTCACACAAG
TGTGACACCGGGAACAAGGTGAGCGAACTGAGTTAGTTGAAGAAAAAAGA
AGCCGGTCTCACTGAGTGCTGTTTTGGGCGGATGATAGACCCTACAAAAG
TCATCTGTTGTAACTACGGTATTCAAGAGCTTAAATACGGAAAGAACACC
GGATGTTGTCGTTTTGATAATTACCGGAAAGGTTTGCAAGATTATTTCGA
GATCTATAACACGGAAACACAGATTTGTTGTGGCGGGAAATTGGAGAAGC
GGGAGCATGGGGCGAGCACCAGTTGTTGTATACAGAGATCATACAATGTT
GATACACATGTTTGCTGCAAAGAAAAGGCGAGAGCAAGGCCCAAATGCAG
AGATTGGTTGCTGCGGTGACGAAGCGTACGACATGAAGGAAAAGATCTGT
TGTGCAGGAAAATTGGGTGATTTCGTCGATGATAGCATAGGAGTAGGACA
ACATCAGCTTCGACAGCCTCAACTTCCTCACATCTCTGAAAGTGGTCGAC
AACACACAAGATGTTGCAATAATCAAGCATATGATTCACGAACTAAAATG
TGTTGCAATGGTCCATATGAGCCAGGCAAAGAATTATGCTGCAACAAAGA
AGTGATAAGCAGTAAGCGCTATGGGTGTTGTCGTAACAAAAAATACGAAC
GAGCATTTGCGACTTGTTGCTCGGGCAAGATCACACCCATCCTTTCAATG
AACGGATTTTGATTTTGGTTCAATTGACACGTCAGACAAAAAGGTCGATG
CGAGCCTTCAAAGTTTCTTCGAGATGCTCAAAAAAGACAACGAGCGTAAA
CAACAACTATGTATGAAAAAGTATAGTCCGAAACGTTTCAGATGTTGTGA
GGGGCGAGCGCATTTCATCCCTTCTAGAAGAATTAAATATTTGTGCTGCA
GAGGTAAAGCGTATGTACCGACCTCACATTTGTGTTGTGGAATGGAAGTG
CAACGGAAAGTGGTGAGCGGTCAGCGAACTGGGATCAAGAAATGCTGTGC
GGGTAAAAATATGATTTCACTTTGCTTTATTGTTGTGCTTTGTTCTCAGC
TTGCCGTCGTCTCAACATCAGCTTTACAAAAAGAATCCAAATAAATGTGA
AAATTACCGATGTTGCGGAAGGAGAATGTATTGCAATGATAAATTGATTT
GTTGTGCTGGTGATGATACAAGAGGCCGGTACAGGGAGAGAATTCACAAG
AAAACGGAGCACTCAAGATGTTGTGGTTTGAGAGCATACAACCGTGTCTC
ACACAAGTGTGACACCGGGAACAAGGTGAGCGAACTGAGTTAGTTGAAGA
AAAAAGAAGCCGGTCTCACTGAGTGCTGTTTTGGGCGGATGATAGACCCT
ACAAAAGTCATCTGTTGTAACTACGGTATTCAAGAGCTTAAATACGGAAA
GAACACCGGATGTTGTCGTTTTGATAATTACCGGAAAGGTTTGCAAGATT
ATTTCGAGATCTATAACACGGAAACACAGATTTGTTGTGGCGGGAAATTG
GAGAAGCGGGAGCATGGGGCGAGCACCAGTTGTTGTATACAGAGATCATA
CAATGTTGATACACATGTTTGCTGCAAAGAAAAGGCGAGAGCAAGGCCCA
AATGCAGAGATTGGTTGCTGCGGTGACGAAGCGTACGACATGAAGGAAAA
GATCTGTTGTGCAGGAAAATTGGGTGATTTCGTCGATGATAGCATAGGAG
TAGGACAACATCAGCTTCGACAGCCTCAACTTCCTCACATCTCTGAAAGT
GGTCGACAACACACAAGATGTTGCAATAATCAAGCATATGATTCACGAAC
TAAAATGTGTTGCAATGGTCCATATGAGCCAGGCAAAGAATTATGCTGCA
ACAAAGAAGTGATAAGCAGTAAGCGCTATGGGTGTTGTCGTAACAAAAAA
TACGAACGAGCATTTGCGACTTGTTGCTCGGGCAAGATCACACCCATCCT
TTCAATGAACGGATTTTGATTTTGGTTCAATTGACACGTCAGACAAAAAG
GTCGATGCGAGCCTTCAAAGTTTCTTCGAGATGCTCAAAAAAGACAACGA
GCGTAAACAACAACTATGTATGAAAAAGTATAGTCCGAAACGTTTCAGAT
GTTGTGAGGGGCGAGCGCATTTCATCCCTTCTAGAAGAATTAAATATTTG
TGCTGCAGAGGTAAAGCGTATGTACCGACCTCACATTTGTGTTGTGGAAT
GGAAGTGCAACGGAAAGTGGTGAGCGGTCAGCGAACTGGGATCAAGAAAT
GCTGTGCGGGTAAAAATATGATTTCACTTTGCTTTATTGTTGTGCTTTGT
TCTCAGCTTGCCGTCGTCTCAACATCAGCTTTACAAAAAGAATCCAAATA
AATGTGAAAATTACCGATGTTGCGGAAGGAGAATGTATTGCAATGATAAA
TTGATTTGTTGTGCTGGTGATGATACAAGAGGCCGGTACAGGGAGAGAAT
TCACAAGAAAACGGAGCACTCAAGATGTTGTGGTTTGAGAGCATACAACC
GTGTCTCACACAAGTGTGACACCGGGAACAAGGTGAGCGAACTGAGTTAG
TTGAAGAAAAAAGAAGCCGGTCTCACTGAGTGCTGTTTTGGGCGGATGAT
AGACCCTACAAAAGTCATCTGTTGTAACTACGGTATTCAAGAGCTTAAAT
ACGGAAAGAACACCGGATGTTGTCGTTTTGATAATTACCGGAAAGGTTTG
CAAGATTATTTCGAGATCTATAACACGGAAACACAGATTTGTTGTGGCGG
GAAATTGGAGAAGCGGGAGCATGGGGCGAGCACCAGTTGTTGTATACAGA
GATCATACAATGTTGATACACATGTTTGCTGCAAAGAAAAGGCGAGAGCA
AGGCCCAAATGCAGAGATTGGTTGCTGCGGTGACGAAGCGTACGACATGA
AGGAAAAGATCTGTTGTGCAGGAAAATTGGGTGATTTCGTCGATGATAGC
ATAGGAGTAGGACAACATCAGCTTCGACAGCCTCAACTTCCTCACATCTC
TGAAAGTGGTCGACAACACACAAGATGTTGCAATAATCAAGCATATGATT
CACGAACTAAAATGTGTTGCAATGGTCCATATGAGCCAGGCAAAGAATTA
TGCTGCAACAAAGAAGTGATAAGCAGTAAGCGCTATGGGTGTTGTCGTAA
CAAAAAATACGAACGAGCATTTGCGACTTGTTGCTCGGGCAAGATCACAC
CCATCCTTTCAATGAACGGATTTTGATTTTGGTTCAATTGACACGTCAGA
CAAAAAGGTCGATGCGAGCCTTCAAAGTTTCTTCGAGATGCTCAAAAAAG
ACAACGAGCGTAAACAACAACTATGTATGAAAAAGTATAGTCCGAAACGT
TTCAGATGTTGTGAGGGGCGAGCGCATTTCATCCCTTCTAGAAGAATTAA
ATATTTGTGCTGCAGAGGTAAAGCGTATGTACCGACCTCACATTTGTGTT
GTGGAATGGAAGTGCAACGGAAAGTGGTGAGCGGTCAGCGAACTGGGATC
AAGAAATGCTGTGCGGGTAAAAATATGATTTCACTTTGCTTTATTGTTGT
GCTTTGTTCTCAGCTTGCCGTCGTCTCAACATCAGCTTTACAAAAAGAAT
CCAAATAAATGTGAAAATTACCGATGTTGCGGAAGGAGAATGTATTGCAA
TGATAAATTGATTTGTTGTGCTGGTGATGATACAAGAGGCCGGTACAGGG
AGAGAATTCACAAGAAAACGGAGCACTCAAGATGTTGTGGTTTGAGAGCA
TACAACCGTGTCTCACACAAGTGTGACACCGGGAACAAGGTGAGCGAACT
GAGTTAGTTGAAGAAAAAAGAAGCCGGTCTCACTGAGTGCTGTTTTGGGC
GGATGATAGACCCTACAAAAGTCATCTGTTGTAACTACGGTATTCAAGAG
CTTAAATACGGAAAGAACACCGGATGTTGTCGTTTTGATAATTACCGGAA
AGGTTTGCAAGATTATTTCGAGATCTATAACACGGAAACACAGATTTGTT
GTGGCGGGAAATTGGAGAAGCGGGAGCATGGGGCGAGCACCAGTTGTTGT
ATACAGAGATCATACAATGTTGATACACATGTTTGCTGCAAAGAAAAGGC
GAGAGCAAGGCCCAAATGCAGAGATTGGTTGCTGCGGTGACGAAGCGTAC
GACATGAAGGAAAAGATCTGTTGTGCAGGAAAATTGGGTGATTTCGTCGA
TGATAGCATAGGAGTAGGACAACATCAGCTTCGACAGCCTCAACTTCCTC
ACATCTCTGAAAGTGGTCGACAACACACAAGATGTTGCAATAATCAAGCA
TATGATTCACGAACTAAAATGTGTTGCAATGGTCCATATGAGCCAGGCAA
AGAATTATGCTGCAACAAAGAAGTGATAAGCAGTAAGCGCTATGGGTGTT
GTCGTAACAAAAAATACGAACGAGCATTTGCGACTTGTTGCTCGGGCAAG
ATCACACCCATCCTTTCAATGAACGGATTTTGATTTTGGTTCAATTGACA
CGTCAGACAAAAAGGTCGATGCGAGCCTTCAAAGTTTCTTCGAGATGCTC
AAAAAAGACAACGAGCGTAAACAACAACTATGTATGAAAAAGTATAGTCC
GAAACGTTTCAGATGTTGTGAGGGGCGAGCGCATTTCATCCCTTCTAGAA
GAATTAAATATTTGTGCTGCAGAGGTAAAGCGTATGTACCGACCTCACAT
TTGTGTTGTGGAATGGAAGTGCAACGGAAAGTGGTGAGCGGTCAGCGAAC
TGGGATCAAGAAATGCTGTGCGGGTAAAAATATGATTTCACTTTGCTTTA
TTGTTGTGCTTTGTTCTCAGCTTGCCGTCGTCTCAACATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030791XLOC_030791Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048397-proteinTCONS_00048397-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048397-exon-scaffold_142-1575043694:843703..844265TCONS_00048397-exon-scaffold_142-1575043694:843703..844265Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1575043694:842924..843231TCONS_00048397-exon-scaffold_142-1575043694:842924..843231Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1575043694:840425..840564TCONS_00048397-exon-scaffold_142-1575043694:840425..840564Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1575043694:839926..840148TCONS_00048397-exon-scaffold_142-1575043694:839926..840148Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1575043694:839357..839659TCONS_00048397-exon-scaffold_142-1575043694:839357..839659Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1575043694:837538..837777TCONS_00048397-exon-scaffold_142-1575043694:837538..837777Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:843703..844265TCONS_00048397-exon-scaffold_142-1510915933:843703..844265Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:842924..843231TCONS_00048397-exon-scaffold_142-1510915933:842924..843231Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:840425..840564TCONS_00048397-exon-scaffold_142-1510915933:840425..840564Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:839926..840148TCONS_00048397-exon-scaffold_142-1510915933:839926..840148Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:839357..839659TCONS_00048397-exon-scaffold_142-1510915933:839357..839659Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1510915933:837538..837777TCONS_00048397-exon-scaffold_142-1510915933:837538..837777Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:843703..844265TCONS_00048397-exon-scaffold_142-1491911889:843703..844265Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:842924..843231TCONS_00048397-exon-scaffold_142-1491911889:842924..843231Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:840425..840564TCONS_00048397-exon-scaffold_142-1491911889:840425..840564Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:839926..840148TCONS_00048397-exon-scaffold_142-1491911889:839926..840148Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:839357..839659TCONS_00048397-exon-scaffold_142-1491911889:839357..839659Clytia hemisphaericaexon
TCONS_00048397-exon-scaffold_142-1491911889:837538..837777TCONS_00048397-exon-scaffold_142-1491911889:837538..837777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:837538..844265 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.396276	0.433107	0.402268	0.377832	0.369308	0.618099	15.51	18.2818	24.097	19.0684	40.4127	55.1217	48.05	51.1614	43.4576	53.7669	40.2835	53.2248	6.0396	6.56948	39.2217	40.6594	22.4314	27.9504	24.9884	30.4976	3.98874	6.36131	11.8636	13.4354
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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