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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048394 ID=TCONS_00048394|Name=TCONS_00048394|organism=Clytia hemisphaerica|type=transcript|length=4848bpRun BLAST on NCBI protein sequence of TCONS_00048394-protein >TCONS_00048394-protein ID=TCONS_00048394-protein|Name=TCONS_00048394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1040bp MKTVFWFITLTVGITQILIPQAYGVSQVPFPSYTVILPTTYSKDNAFLVLRun BLAST on NCBI transcript from alignment at scaffold_142:776750..789033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048394 ID=TCONS_00048394|Name=TCONS_00048394|organism=Clytia hemisphaerica|type=transcript|length=12284bp|location=Sequence derived from alignment at scaffold_142:776750..789033- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:776750..789033- >TCONS_00048394 ID=TCONS_00048394|Name=TCONS_00048394|organism=Clytia hemisphaerica|type=CDS|length=40599bp|location=Sequence derived from alignment at scaffold_142:776750..789033- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048394 vs. Swiss-Prot (Human)
Match: AGRG4 (Adhesion G-protein coupled receptor G4 OS=Homo sapiens GN=ADGRG4 PE=2 SV=2) HSP 1 Score: 111.694 bits (278), Expect = 2.739e-24 Identity = 113/464 (24.35%), Postives = 213/464 (45.91%), Query Frame = 1
Query: 1945 TYDWQAMSVTDPPQKQSCKRNVEKNITAKCVVNED---GFYAEMKIDDSECVKEESDINLNELAQVNVTKDNVEKVSSRLRNLTRSSDSFTTQDVESGVTSLENIVSYVASSGKVADDFFQSVDDVLAVQSKTMMKSQTSNATSQRLMNVINKAG------GDIAQ----DPPKTVTKQNYALGGMKISKTSNKDLVAKASSGSSLHLIMGSDAESGMKSDSSIIVPSEITRAIGEASAEEMNFVAVVYRNNVIFQTDSKDQIMSRNILSAQIRGKS-VQNTSQPIKMMFKK--STKNHGGKIDQYKCVFW----NVSRQGWSTRGLNSFYHKANDMYE-CHSNHLTNFALL--FNAGDVSESDSEILSAITYVGLGLNMAGAVLTLLTYIIFPILREHVPPKILMNLCAALIMLSIIFLVGAERDNKTKIS-CEIASFLLQYTILAVFCWSAIEGFHSVRGLV 3264
TY W + T+ Q + C +N + N T C ++ + + + K + ++E D + +LA + ++ +N E V+ + NL S + ++ + V+ + +I S + Q ++ VL Q+ + + + S ++ +I + G G IA V + ++ GM S S ++ G+ + +G+ G+ + SI +P +T I ++ + + F + +F+T + + ++ ++SA I +QN + P+ + + +N+G Q C FW N GW++ G + N Y C +HLT+F +L + V + +IL+ ITY G G++ + ++TYI F LR+ P KIL+NLC AL+ML+++FL+ + + K+ C A+ L Y +L F W +E H LV
Sbjct: 2398 TYKWLLTNPTETAQTR-CIKNEDGNATRFCSISINTGKSQWEKPKFKQCKLLQELPD-KIVDLANITISDENAEDVAEHILNLINESPALGKEETKIIVSKISDISQCDEISMNLTHVMLQIINVVLEKQNNS---ASDLHEISNEILRIIERTGHKMEFSGQIANLTVAGLALAVLRGDHTFDGMAFSIHSYEE-------GTDPEIFLGNVPVGGILA--SIYLPKSLTERIPLSNLQTILFN--FFGQTSLFKTKNVTKALTTYVVSASISDDMFIQNLADPVVITLQHIGGNQNYG----QVHCAFWDFENNNGLGGWNSSGCK--VKETNVNYTICQCDHLTHFGVLMDLSRSTVDSVNEQILALITYTGCGISSIFLGVAVVTYIAFHKLRKDYPAKILINLCTALLMLNLVFLINSWLSSFQKVGVCITAAVALHYFLLVSFTWMGLEAVHMYLALV 2839 The following BLAST results are available for this feature:
BLAST of TCONS_00048394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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