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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048391 ID=TCONS_00048391|Name=TCONS_00048391|organism=Clytia hemisphaerica|type=transcript|length=2748bp
ATATGATGACCTTTAGAAAGTGTTTCGTAAATTTGACAAACAAACATTCT
ATTATGGTCATTAGAAATGTTACAAATTCCGTTAAATGCCTCCTGTacgt
ttttcattaaaataatttGCTTTTTCCGGACTACATTTCCATCTTTTCAA
ACAAGACAAATCAGatatattttcattcattaagGATGTTTCAGTAATTA
GCTTCTTACGAAATGTGATTACCCTGCCATGGTATAAAAAGGTGATCTTC
AGAGTGAAAAATCATCCAAGCTCAAACAACTTAAGGAAAGAAGAACAAGG
AGAAGAACTCAAAACAACAAACAAGATAAAATGAAGACCATTATTGCTCT
TGCACTTATTGCTGcCGCCTCAGCCATCACCAACCCACCCATCACTGGAA
CAACACCACCAGCTATTGAATGCCCAAATTCGTTATGTAACGGTAGAAAT
GATGGAAACTTTGCCATTGATTACTACAGCAACTACTTCGTCCAATGTGT
CGGTGGATTAGCTTATTGTCAAGCTTGCTTCCCCCTCTCCTTGGAATTCA
GTCAAACTTGCAACCAATGTTTGTACAGCAAACACGACGACTGTGTCACC
ACACAAAAATGGCACCCAGCCACCACTTTCTCTTGCCCAGACAAATGCCC
CCATTACGGACCAGACTTCAGTGGAAACATTGAAGACCCAGATCAACCAC
GACAATACGTTGCTTGCTGGAAGGGAGTCACTGTTGGATGTGTTGCTTGT
CCAGGAAACTTGAAATTCAACCAACAAGAAAACGCTTGCTTGTACGAGGG
CAAATACCTCACTGAGCCATCCCACTAATTTAAActtattttgtgaaaaa
agaaaaattttaccatgttaaaaacaagaaatttagtatttatgaaagat
aaaaattaaaTCTCTAAATCAATATCAAAATCGCTGTCAATTGATTCATC
CGATCTCATTTTTCGCccaaaatggttttatatgtaCATCAATATAACTT
TCTTACATCTGTGTATCAATATAAAGTTGAATGAACATCAAAACGATGTT
ATCCCATCTTGGAAGGGTTTTCGTCTATCAAGAAGCACAAAGActtaaaa
aatatatgaacgAAAAGAGAgtgaaaagttattttttaattCATCAAGTT
AATTTCGATTTTACAGTCTGCACCGAATTCCAAGAATATCATTTCGTAGT
CAACCGCTTCCCTTTTTTGATTTCGCAGTATTTCCTCACTCTCGAAGTTT
CACTTTGATCATAAGGCCGTTGGTAGAAGTGTTGATAGCCGTAAAGGTTT
GTTTGATCTCTGATTCCTTTTGTAAAGAAATCATCTCAAAACGCTTCACG
ATCTGAAACAGGGCGATTCTAAGCTCCATCATCGCGAAACGTTGCCCGAT
GCAATTTCGCGGACCGGCTGAAAATGGAATGAACTTGAacgctttttctt
tttgacggctttcaaaatctttgaatcTCTCTGGAATGAATGTCAACGGA
TTTTCCcagtttttctcaaaatgatTTAAAGCTCGAACATCGATAGCTAA
AGCACATTCCGGAAAAACTTTTCCACCTAAAATGGTACCCTCATTCACCT
CTCTTGCGAATCCATTTAAAATTGCGTGCAGTCTCAAAGTTTCTTTAATC
ACTTGGTCCAAAtagttcaattttttaaaatcattcaactcaaaattctc
ggtttttgaaaaattcgagatttctttcaaaagtttttcctGACATTTGG
GGTTACGACCGAGACAGTACAATACGAAAGCGAAAGTTGATGATGTAGAC
TCGTATCCAGCAAAAACAAGCGTCGTAACTTCGTCAACTATCCCTTCGAT
ATCGATCTCTCCTCTCGCAAAAGAATCCAACAAAACATCTATAAAAATTT
TACGAGTTGCTTTCAAGTCACTTGTGACAcctttatttttgtgaaattcg
aTTCGGTCCTCGATTATGTTTTTCACCCAGCTTCTCAACGCGTTTCGCTG
TTTCAGAAATAATTTGCCATCTTTGCTTAAAGAGTAGATGAAATCATTGA
ATAGCCACGGTCTAAAGAATCGCTTTACCATCAAATTCGTTGCGTTTTCG
TAAAGTGCTTTAAAGTCACTACCATTTTTCCCTCTCAAAGATAGACGTTG
TCCCATTGAAGTTTCACATATAACTGCCATAGTCAGCTTTGTACCCATAT
TGAGAACATTGAAGTTGGTACCATTTTCAGCGTGTTCGTCAAAAAGCTGA
ATAAGCTCCTTTACACAGCGTTCCATACATGGGATAAACCCgttcaaaat
tccaaaatgaaaaGCTGGTGTGATCAAGCGCCGCCTTTCTTTCCATAACT
CTCCATCACTGGTAACCAGTCCCTTTCCGATCAACGCCTCAAGGAAAACA
TAACCCCAAGATTTTTTAAGATATCTCGAATTACTCAGGAGATCGTTTAT
AACCTTAACATTCGAAGTGATCACCAATTTCTTCGTCGTTAAATAATATC
CAAAAGTTCCGTCAAAGTCTTTATACCATTTGTCTGAAAGTGCCCGAAAC
TTCTCTTGGTCAAGTATAATGGGAATGTGTCCGATTAAGGGCCAATCACC
AGGGATAAAAGTGATGTCACCATGGAAACTATTCCGCGTGTAAACTTTCC
ACCAAATAAGGAGGAGCAAGACTCCACCAATGAATAAGGTTGCAAGACAC
GTCAAATCTAACAACATAATTCTTTTATATGTGATACTTTACTGTCTA Run BLAST on NCBI transcript from alignment at scaffold_142:703448..706366- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048391 ID=TCONS_00048391|Name=TCONS_00048391|organism=Clytia hemisphaerica|type=transcript|length=2919bp|location=Sequence derived from alignment at scaffold_142:703448..706366- (Clytia hemisphaerica)
ATATGATGACCTTTAGAAAGTGTTTCGTAAATTTGACAAACAAACATTCT
ATTATGGTCATTAGAAATGTTACAAATTCCGTTAAATGCCTCCTGTACGT
TTTTCATTAAAATAATTTGCTTTTTCCGGACTACATTTCCATCTTTTCAA
ACAAGACAAATCAGATATATTTTCATTCATTAAGGATGTTTCAGTAATTA
GCTTCTTACGAAATGTGATTACCCTGCCATGGTATAAAAAGGTGATCTTC
AGAGTGAAAAATCATCCAAGCTCAAACAACTTAAGGAAAGAAGAACAAGG
AGAAGAACTCAAAACAACAAACAAGATAAAATGAAGACCATTATTGCTCT
TGCACTTATTGCTGGTAAGTATTTTACACCTTACTTTTATTGCGCTTAGA
GCCAGAAAATTTAGATTTTGATTCTGAAATACATCTTTTGTTAAGGGCCC
ATAACTTAAATTTGTTTTTTTGTTTGTGTCTTACATGCCGTACTATGAGA
CTAAGATTAAAACGTGTATTTTCCTTATTTTCCAGCCGCCTCAGCCATCA
CCAACCCACCCATCACTGGAACAACACCACCAGCTATTGAATGCCCAAAT
TCGTTATGTAACGGTAGAAATGATGGAAACTTTGCCATTGATTACTACAG
CAACTACTTCGTCCAATGTGTCGGTGGATTAGCTTATTGTCAAGCTTGCT
TCCCCCTCTCCTTGGAATTCAGTCAAACTTGCAACCAATGTTTGTACAGC
AAACACGACGACTGTGTCACCACACAAAAATGGCACCCAGCCACCACTTT
CTCTTGCCCAGACAAATGCCCCCATTACGGACCAGACTTCAGTGGAAACA
TTGAAGACCCAGATCAACCACGACAATACGTTGCTTGCTGGAAGGGAGTC
ACTGTTGGATGTGTTGCTTGTCCAGGAAACTTGAAATTCAACCAACAAGA
AAACGCTTGCTTGTACGAGGGCAAATACCTCACTGAGCCATCCCACTAAT
TTAAACTTATTTTGTGAAAAAAGAAAAATTTTACCATGTTAAAAACAAGA
AATTTAGTATTTATGAAAGATAAAAATTAAATCTCTAAATCAATATCAAA
ATCGCTGTCAATTGATTCATCCGATCTCATTTTTCGCCCAAAATGGTTTT
ATATGTACATCAATATAACTTTCTTACATCTGTGTATCAATATAAAGTTG
AATGAACATCAAAACGATGTTATCCCATCTTGGAAGGGTTTTCGTCTATC
AAGAAGCACAAAGACTTAAAAAATATATGAACGAAAAGAGAGTGAAAAGT
TATTTTTTAATTCATCAAGTTAATTTCGATTTTACAGTCTGCACCGAATT
CCAAGAATATCATTTCGTAGTCAACCGCTTCCCTTTTTTGATTTCGCAGT
ATTTCCTCACTCTCGAAGTTTCACTTTGATCATAAGGCCGTTGGTAGAAG
TGTTGATAGCCGTAAAGGTTTGTTTGATCTCTGATTCCTTTTGTAAAGAA
ATCATCTCAAAACGCTTCACGATCTGAAACAGGGCGATTCTAAGCTCCAT
CATCGCGAAACGTTGCCCGATGCAATTTCGCGGACCGGCTGAAAATGGAA
TGAACTTGAACGCTTTTTCTTTTTGACGGCTTTCAAAATCTTTGAATCTC
TCTGGAATGAATGTCAACGGATTTTCCCAGTTTTTCTCAAAATGATTTAA
AGCTCGAACATCGATAGCTAAAGCACATTCCGGAAAAACTTTTCCACCTA
AAATGGTACCCTCATTCACCTCTCTTGCGAATCCATTTAAAATTGCGTGC
AGTCTCAAAGTTTCTTTAATCACTTGGTCCAAATAGTTCAATTTTTTAAA
ATCATTCAACTCAAAATTCTCGGTTTTTGAAAAATTCGAGATTTCTTTCA
AAAGTTTTTCCTGACATTTGGGGTTACGACCGAGACAGTACAATACGAAA
GCGAAAGTTGATGATGTAGACTCGTATCCAGCAAAAACAAGCGTCGTAAC
TTCGTCAACTATCCCTTCGATATCGATCTCTCCTCTCGCAAAAGAATCCA
ACAAAACATCTATAAAAATTTTACGAGTTGCTTTCAAGTCACTTGTGACA
CCTTTATTTTTGTGAAATTCGATTCGGTCCTCGATTATGTTTTTCACCCA
GCTTCTCAACGCGTTTCGCTGTTTCAGAAATAATTTGCCATCTTTGCTTA
AAGAGTAGATGAAATCATTGAATAGCCACGGTCTAAAGAATCGCTTTACC
ATCAAATTCGTTGCGTTTTCGTAAAGTGCTTTAAAGTCACTACCATTTTT
CCCTCTCAAAGATAGACGTTGTCCCATTGAAGTTTCACATATAACTGCCA
TAGTCAGCTTTGTACCCATATTGAGAACATTGAAGTTGGTACCATTTTCA
GCGTGTTCGTCAAAAAGCTGAATAAGCTCCTTTACACAGCGTTCCATACA
TGGGATAAACCCGTTCAAAATTCCAAAATGAAAAGCTGGTGTGATCAAGC
GCCGCCTTTCTTTCCATAACTCTCCATCACTGGTAACCAGTCCCTTTCCG
ATCAACGCCTCAAGGAAAACATAACCCCAAGATTTTTTAAGATATCTCGA
ATTACTCAGGAGATCGTTTATAACCTTAACATTCGAAGTGATCACCAATT
TCTTCGTCGTTAAATAATATCCAAAAGTTCCGTCAAAGTCTTTATACCAT
TTGTCTGAAAGTGCCCGAAACTTCTCTTGGTCAAGTATAATGGGAATGTG
TCCGATTAAGGGCCAATCACCAGGGATAAAAGTGATGTCACCATGGAAAC
TATTCCGCGTGTAAACTTTCCACCAAATAAGGAGGAGCAAGACTCCACCA
ATGAATAAGGTTGCAAGACACGTCAAATCTAACAACATAATTCTTTTATA
TGTGATACTTTACTGTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048391-exon-scaffold_142-1575043694:706003..706366 | TCONS_00048391-exon-scaffold_142-1575043694:706003..706366 | Clytia hemisphaerica | exon |
| TCONS_00048391-exon-scaffold_142-1575043694:703448..705831 | TCONS_00048391-exon-scaffold_142-1575043694:703448..705831 | Clytia hemisphaerica | exon |
| TCONS_00048391-exon-scaffold_142-1510915933:706003..706366 | TCONS_00048391-exon-scaffold_142-1510915933:706003..706366 | Clytia hemisphaerica | exon |
| TCONS_00048391-exon-scaffold_142-1510915933:703448..705831 | TCONS_00048391-exon-scaffold_142-1510915933:703448..705831 | Clytia hemisphaerica | exon |
| TCONS_00048391-exon-scaffold_142-1491911889:706003..706366 | TCONS_00048391-exon-scaffold_142-1491911889:706003..706366 | Clytia hemisphaerica | exon |
| TCONS_00048391-exon-scaffold_142-1491911889:703448..705831 | TCONS_00048391-exon-scaffold_142-1491911889:703448..705831 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:703448..706366 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00048391 vs. Swiss-Prot (Human)
Match: CP4V2 (Cytochrome P450 4V2 OS=Homo sapiens GN=CYP4V2 PE=1 SV=2) HSP 1 Score: 223.402 bits (568), Expect = 5.092e-63 Identity = 152/474 (32.07%), Postives = 251/474 (52.95%), Query Frame = -2
Query: 1242 ITFIPGDWPLIGHIPII-LDQEKFRALSDKWYKDFDGT--FGYYLTTKKLVITSNVKVINDLLSNSRYLKKSWGYVFLEALIGKGLVTSDGELWKERRRLITPAFHFGILNGFIPCMERCVKELIQLFDEHAENGTNFNVLNMGTKLTMAVICETSMGQRLSLRGKNGSDFKALYENATNLMVKRFFRPWLFNDFIYSLSKDGKLFLKQRNALRSWVKNIIEDRI-EFHKNKGVTSDLKAT------RKIFIDVLLDSFARGE---IDIEGIVDEVTTLVFAGYESTSSTFAFVLYCLGRNPKCQEKLLKEISN-FSKTEN-FELNDFKKLNYLDQVIKETLRLHAILNGFAREVNEGT-ILGGKVFPECALAIDVRALNHFEKNWENPLTFIPERFKDFESRQKEKAFKFIPFSAGPRNCIGQRFAMMELRIALFQIVKRFEMISLQKESEIKQTFTAINTSTNGLMIKVKLR 2615
I + +PL+GH ++ D +F ++ +++ ++ +V N + + +L++S+ + KS Y FLE +G GL+TS G W+ RR+++TP FHF IL F+ M L++ ++H N FN T + +ICET+MG+ + + + S++ + ++ +R PWL+ D Y + K+G K L ++ ++I +R E + N+ D + + R+ F+D+LL S E + E I +EV T +F G+++T++ + LY LG NP+ Q+K+ E+ + F K++ + D KKL YL+ VIKETLRL + FAR V+E + G +V I AL+ + + NP F PERF E+ Q + ++PFSAGPRNCIGQ+FA+ME + L I++ F + S QK E+ I +NG+ IK+K R
Sbjct: 50 IPTVARAYPLVGHALLMKPDGREFFQQIIEYTEEYRHMPLLKLWVGPVPMVALYNAENVEVILTSSKQIDKSSMYKFLEPWLGLGLLTSTGNKWRSRRKMLTPTFHFTILEDFLDIMNEQANILVKKLEKHI-NQEAFNCFFYITLCALDIICETAMGKNIGAQSNDDSEYVRAVYRMSEMIFRRIKMPWLWLDLWYLMFKEGWEHKKSLQILHTFTNSVIAERANEMNANEDCRGDGRGSAPSKNKRRAFLDLLL-SVTDDEGNRLSHEDIREEVDTFMFEGHDTTAAAINWSLYLLGSNPEVQKKVDHELDDVFGKSDRPATVEDLKKLRYLECVIKETLRLFPSVPLFARSVSEDCEVAGYRVLKGTEAVIIPYALHRDPRYFPNPEEFQPERFFP-ENAQGRHPYAYVPFSAGPRNCIGQKFAVMEEKTILSCILRHFWIESNQKREELGLEGQLILRPSNGIWIKLKRR 520
The following BLAST results are available for this feature:
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