TCONS_00048390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048390
Unique NameTCONS_00048390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=transcript|length=1700bp
TGACTTTTCAGCTCACTTATATccgaaaagtaaaaaagaacaaatcacTT
ACAAACCTTTGATACAATGAGTGAAGACGTATTGGATGATCCTCCTCCAC
agattgaaatcaaaattgaagaagaagatgatgaCCAGCTTTCGTCTCCA
TCggaatCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGC
AACGGAGAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGC
CTCCCCGTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTC
ATTGAATtatggtcaaaagaaaaattactttaTAACACTTCGGACGTTTT
TTACATGCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAA
CACTTCGGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAAC
AAAATGAATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAA
AAAGAGCCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATG
ATGAATTATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAAC
TCTATAGAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTC
TAATACTGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGA
GCACTAGGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGG
CTAGCTGAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTC
ACCACCGTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGT
CCGAACCTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATG
ACCGTGTTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAA
TGAGTCAGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGT
CCAAAAGTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAA
CCAATCCCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTAC
CCTACAACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCT
CTGTCGAGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCC
GGTATTCAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCT
CGTCTCCATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTC
AACAAAAACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCA
CAGAAGCCTTGAAGGGTTGGTATGTATTATTAGGTACTTATAGGGATAGT
TTACCTTATTTTATGGTAAGATTTTTAGGTCTTTTGTTTATAGCTTTCTT
ATTCCagcaggcacacaacgttgtttcaacgtctatctaacgttcactac
gtccatataacgttatattaacgtttaaacaacgttgtgtgtatAGCTTT
GTTATGACTTTTGAACAGGAAGATTTTattaggaaaatatttttgaaaac
tttagaTATTCgattttatgttatttttttcgcTATTCCTTTCTTCCTCT
TTTCCCAGACACTCTATATGTGAAAGTTTTCAATTTCAGCTTTGGCAGAG
Run BLAST on NCBI

protein sequence of TCONS_00048390-protein

>TCONS_00048390-protein ID=TCONS_00048390-protein|Name=TCONS_00048390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MSEDVLDDPPPQIEIKIEEEDDDQLSSPSESTQYDVDVTFPVIDATEKSD
SVQTVTRKRGRPPRHCEYEWSEKDTYRLIELWSKEKLLYNTSDVFYMHRD
FRAQSLNNICKTLRDEGIELCSPGDVRNKMNNLRNYYSAEKRKEKKSLDS
ELPFKSNWKFYDELCFLDENYKPRANSNSIERPDDEFEESVFLDSNTEAP
PTMISRSIDPPSTRLVETSSRLIETSSRLAETSKQGSVGAKRKPSPPSPP
EDSSPSAKRSVSEPSTTTASSEPASSFMTVFRKSRKHSKVMYSMNESANF
VVETRPVLENTSKSFRMNKRVSFPKENEPIPPTQCCDEVNVGKRTLQQGV
AYPKELTLVPVSVELPSIGIASTSSSSAGIQNLDKCYADLIYQLLVSMPD
SVEKAMLKLEFQQKLINLKYSQSGKFPPQKP
Run BLAST on NCBI

transcript from alignment at scaffold_142:686381..689263-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at scaffold_142:686381..689263- (Clytia hemisphaerica)
TGACTTTTCAGCTCACTTATATCCGAAAAGTAAAAAAGAACAAATCACTT
ACAAACCTTTGATACAATGAGTGAAGACGTATTGGATGATCCTCCTCCAC
AGATTGAAATCAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCA
TCGTATGTATTTTTTCTTATACTTTATTAAAAAAAGGCACCCCTGTGTCA
CAGACCCGTTGCGACCCCAGCCCCACTGGAAAATTAAGCAAAAATTTTCG
TCTCCGGTGGGAAAATACCTTGAATTTCAGCCCCACTGGGAAATTGACTT
TGATTTCATCCTCACTCGAAATTCCATGTTTAAAATTAAAATTGCACTCC
AAAACTATCCTCATTGGGTTTTTTAACCTTAGAACAATAGAATTTTTATC
CCCATTGGGATTTCGATAGGAATTCTTATCCCCACTCGGAAAAAAGTTCC
ACCGGGGCTGTGAGACAAGGGTGTATAAATGCTTCGTGAACTTGCGTTAA
AACTCTGGGAGTATCTGTCTATCTGGGAGTGTCAAAAAATCAACTCCCTG
AAGGGTCAGTACCGTAACTTCGTGTAATGCTGACATCCTTGTCGAATTCT
GTCATAGCAACCATCTGGTCTGCAAAGTAGTAGAGTAATTTTTTAAACAG
ATTACTCAGAAGGTTTTATTTATAAACATTTAAAAGACCAGGAGGTTGCT
TATGATCGAATTAAACAAGGTATATCGACATTACACGAGGTAACGGTAGT
TCTTTTAATTTAGGATAAAGTTTGGCTGAAAATTGGGAAAAATAAGCTCT
CAAATGGTCATCAGAACGTCAAAAATTTACGAAATTTATTTTCTCAACAA
GGGTCAGTTTTAGAACTTTGGCTCGAGCATACCCTTACGTCAGTTTTTCG
CTCCGAGGCAAAAAGGGCCAAAAATCTCGTGCTTTCAAAGCTTTAAATTT
TAAGTTTTAAATTCTACATTCTTCTGTTTGTAGCTCAAAAACCCTCTCGA
GATTCCATCAGAGATCTTTAGAATCCTTCCGTGTGGGTTAAACTTCCGTT
TCTTCCAGGATAAGACCTGTCCTGGCCTAATGACCTGACCTGAGAAACGA
ATGTGTTTTGTAAAGTGAATTTCAAGTATATTTCGAGAGACCAATCTTGT
ATCTAGAGCCACTTGCACCCTTTTTGATTTTACTGATTGACGTGGTGACA
CTATCAGAATCATAAAAAAGCGAACAAACTGAGGGACTGTGTTCGAATGT
TGTTTTAAGTGAACTACATACACAATAGATAAAACTTGCTCATTACTTGA
ATCTATTTTACGAAGAAGAAAATTCATTTTTCCAGGGAATCTACTCAGTA
CGATGTTGACGTCACGTTCCCCGTTATCGATGCAACGGAGAAATCGGATT
CCGTACAAACAGTCACACGAAAACGAGGTCGGCCTCCCCGTCATTGCGAA
TACGAATGGAGTGAGAAGGATACTTACCGTCTCATTGAATTATGGTCAAA
AGAAAAATTACTTTATAACACTTCGGACGTTTTTTACATGCATCGTGATT
TTCGGGCACAATCTTTAAACAATATTTGTAAAACACTTCGGGATGAAGGG
ATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAAAATGAATAATCTCCG
AAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAAAGAGCCTCGATTCAG
AGCTACCTTTTAAATCGAACTGGAAATTTTATGATGAATTATGTTTCTTG
GACGAGAATTATAAGCCAAGAGCGAATTCCAACTCTATAGAAAGACCAGA
CGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTAATACTGAAGCACCTC
CAACGATGATTTCAAGGTCCATAGATCCGCCGAGCACTAGGCTAGTTGAA
ACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCTAGCTGAAACTTCAAA
GCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCACCACCGTCACCACCAG
AGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCCGAACCTTCTACCACA
ACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGACCGTGTTTCGTAAATC
AAGAAAACATTCCAAAGTGATGTACTCCATGAATGAGTCAGCAAACTTTG
TGGTTGAAACACGACCTGTGTTAGAAAATACGTCCAAAAGTTTCAGAATG
AATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACCAATCCCACCCACACA
ATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCCTACAACAAGGGGTTG
CTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCTGTCGAGTTACCAAGC
ATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGGTATTCAGAACTTAGA
TAAATGTTATGCAGACTTGATTTACCAGCTTCTCGTCTCCATGCCGGATA
GCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAACAAAAACTAATCAAC
CTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACAGAAGCCTTGAAGGGT
TGGTATGTATTATTAGGTACTTATAGGGATAGTTTACCTTATTTTATGGT
AAGATTTTTAGGTCTTTTGTTTATAGCTTTCTTATTCCAGCAGGCACACA
ACGTTGTTTCAACGTCTATCTAACGTTCACTACGTCCATATAACGTTATA
TTAACGTTTAAACAACGTTGTGTGTATAGCTTTGTTATGACTTTTGAACA
GGAAGATTTTATTAGGAAAATATTTTTGAAAACTTTAGATATTCGATTTT
ATGTTATTTTTTTCGCTATTCCTTTCTTCCTCTTTTCCCAGACACTCTAT
ATGTGAAAGTTTTCAATTTCAGCTTTGGCAGAG

Coding sequence (CDS) from alignment at scaffold_142:686381..689263-

>TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_142:686381..689263- (Clytia hemisphaerica)
GGAATCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGCAA
CGGAGAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGCCT
CCCCGTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTCAT
TGAATTATGGTCAAAAGAAAAATTACTTTATAACACTTCGGACGTTTTTT
ACATGCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAACA
CTTCGGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAA
AATGAATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAA
AGAGCCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATGAT
GAATTATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAACTC
TATAGAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTA
ATACTGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGAGC
ACTAGGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCT
AGCTGAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCAC
CACCGTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCC
GAACCTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGAC
CGTGTTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAATG
AGTCAGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGTCC
AAAAGTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACC
AATCCCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCC
TACAACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCT
GTCGAGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGG
TATTCAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCTCG
TCTCCATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAA
CAAAAACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACA
GAAGCCTTGAATGAGTGAAGACGTATTGGATGATCCTCCTCCACAGATTG
AAATCAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCATCGGAA
TCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGCAACGGA
GAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGCCTCCCC
GTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTCATTGAA
TTATGGTCAAAAGAAAAATTACTTTATAACACTTCGGACGTTTTTTACAT
GCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAACACTTC
GGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAAAATG
AATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAAAGAG
CCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATGATGAAT
TATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAACTCTATA
GAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTAATAC
TGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGAGCACTA
GGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCTAGCT
GAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCACCACC
GTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCCGAAC
CTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGACCGTG
TTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAATGAGTC
AGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGTCCAAAA
GTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACCAATC
CCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCCTACA
ACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCTGTCG
AGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGGTATT
CAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCTCGTCTC
CATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAACAAA
AACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACAGAAG
CCTTGAATGAGTGAAGACGTATTGGATGATCCTCCTCCACAGATTGAAAT
CAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030786XLOC_030786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048390-proteinTCONS_00048390-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048390-exon-scaffold_142-1575043694:689112..689263TCONS_00048390-exon-scaffold_142-1575043694:689112..689263Clytia hemisphaericaexon
TCONS_00048390-exon-scaffold_142-1575043694:686381..687928TCONS_00048390-exon-scaffold_142-1575043694:686381..687928Clytia hemisphaericaexon
TCONS_00048390-exon-scaffold_142-1510915933:689112..689263TCONS_00048390-exon-scaffold_142-1510915933:689112..689263Clytia hemisphaericaexon
TCONS_00048390-exon-scaffold_142-1510915933:686381..687928TCONS_00048390-exon-scaffold_142-1510915933:686381..687928Clytia hemisphaericaexon
TCONS_00048390-exon-scaffold_142-1491911889:689112..689263TCONS_00048390-exon-scaffold_142-1491911889:689112..689263Clytia hemisphaericaexon
TCONS_00048390-exon-scaffold_142-1491911889:686381..687928TCONS_00048390-exon-scaffold_142-1491911889:686381..687928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:686381..689263 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
17.1397	14.8915	14.3322	13.6604	4.59876	3.97719	6.47078	6.68398	4.37169	6.69699	9.65156	4.19275	14.4085	9.40409	6.39659	7.49734	9.34347	13.7365	5.96013	8.45355	5.10037	5.32433	25.6905	19.6687	4.45327	4.91227	21.1931	23.7943	64.7582	60.0222
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006578MADF-dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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