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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=transcript|length=1700bp
TGACTTTTCAGCTCACTTATATccgaaaagtaaaaaagaacaaatcacTT
ACAAACCTTTGATACAATGAGTGAAGACGTATTGGATGATCCTCCTCCAC
agattgaaatcaaaattgaagaagaagatgatgaCCAGCTTTCGTCTCCA
TCggaatCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGC
AACGGAGAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGC
CTCCCCGTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTC
ATTGAATtatggtcaaaagaaaaattactttaTAACACTTCGGACGTTTT
TTACATGCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAA
CACTTCGGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAAC
AAAATGAATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAA
AAAGAGCCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATG
ATGAATTATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAAC
TCTATAGAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTC
TAATACTGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGA
GCACTAGGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGG
CTAGCTGAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTC
ACCACCGTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGT
CCGAACCTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATG
ACCGTGTTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAA
TGAGTCAGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGT
CCAAAAGTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAA
CCAATCCCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTAC
CCTACAACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCT
CTGTCGAGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCC
GGTATTCAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCT
CGTCTCCATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTC
AACAAAAACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCA
CAGAAGCCTTGAAGGGTTGGTATGTATTATTAGGTACTTATAGGGATAGT
TTACCTTATTTTATGGTAAGATTTTTAGGTCTTTTGTTTATAGCTTTCTT
ATTCCagcaggcacacaacgttgtttcaacgtctatctaacgttcactac
gtccatataacgttatattaacgtttaaacaacgttgtgtgtatAGCTTT
GTTATGACTTTTGAACAGGAAGATTTTattaggaaaatatttttgaaaac
tttagaTATTCgattttatgttatttttttcgcTATTCCTTTCTTCCTCT
TTTCCCAGACACTCTATATGTGAAAGTTTTCAATTTCAGCTTTGGCAGAG Run BLAST on NCBI protein sequence of TCONS_00048390-protein >TCONS_00048390-protein ID=TCONS_00048390-protein|Name=TCONS_00048390-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MSEDVLDDPPPQIEIKIEEEDDDQLSSPSESTQYDVDVTFPVIDATEKSD
SVQTVTRKRGRPPRHCEYEWSEKDTYRLIELWSKEKLLYNTSDVFYMHRD
FRAQSLNNICKTLRDEGIELCSPGDVRNKMNNLRNYYSAEKRKEKKSLDS
ELPFKSNWKFYDELCFLDENYKPRANSNSIERPDDEFEESVFLDSNTEAP
PTMISRSIDPPSTRLVETSSRLIETSSRLAETSKQGSVGAKRKPSPPSPP
EDSSPSAKRSVSEPSTTTASSEPASSFMTVFRKSRKHSKVMYSMNESANF
VVETRPVLENTSKSFRMNKRVSFPKENEPIPPTQCCDEVNVGKRTLQQGV
AYPKELTLVPVSVELPSIGIASTSSSSAGIQNLDKCYADLIYQLLVSMPD
SVEKAMLKLEFQQKLINLKYSQSGKFPPQKP Run BLAST on NCBI transcript from alignment at scaffold_142:686381..689263- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=transcript|length=2883bp|location=Sequence derived from alignment at scaffold_142:686381..689263- (Clytia hemisphaerica)
TGACTTTTCAGCTCACTTATATCCGAAAAGTAAAAAAGAACAAATCACTT
ACAAACCTTTGATACAATGAGTGAAGACGTATTGGATGATCCTCCTCCAC
AGATTGAAATCAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCA
TCGTATGTATTTTTTCTTATACTTTATTAAAAAAAGGCACCCCTGTGTCA
CAGACCCGTTGCGACCCCAGCCCCACTGGAAAATTAAGCAAAAATTTTCG
TCTCCGGTGGGAAAATACCTTGAATTTCAGCCCCACTGGGAAATTGACTT
TGATTTCATCCTCACTCGAAATTCCATGTTTAAAATTAAAATTGCACTCC
AAAACTATCCTCATTGGGTTTTTTAACCTTAGAACAATAGAATTTTTATC
CCCATTGGGATTTCGATAGGAATTCTTATCCCCACTCGGAAAAAAGTTCC
ACCGGGGCTGTGAGACAAGGGTGTATAAATGCTTCGTGAACTTGCGTTAA
AACTCTGGGAGTATCTGTCTATCTGGGAGTGTCAAAAAATCAACTCCCTG
AAGGGTCAGTACCGTAACTTCGTGTAATGCTGACATCCTTGTCGAATTCT
GTCATAGCAACCATCTGGTCTGCAAAGTAGTAGAGTAATTTTTTAAACAG
ATTACTCAGAAGGTTTTATTTATAAACATTTAAAAGACCAGGAGGTTGCT
TATGATCGAATTAAACAAGGTATATCGACATTACACGAGGTAACGGTAGT
TCTTTTAATTTAGGATAAAGTTTGGCTGAAAATTGGGAAAAATAAGCTCT
CAAATGGTCATCAGAACGTCAAAAATTTACGAAATTTATTTTCTCAACAA
GGGTCAGTTTTAGAACTTTGGCTCGAGCATACCCTTACGTCAGTTTTTCG
CTCCGAGGCAAAAAGGGCCAAAAATCTCGTGCTTTCAAAGCTTTAAATTT
TAAGTTTTAAATTCTACATTCTTCTGTTTGTAGCTCAAAAACCCTCTCGA
GATTCCATCAGAGATCTTTAGAATCCTTCCGTGTGGGTTAAACTTCCGTT
TCTTCCAGGATAAGACCTGTCCTGGCCTAATGACCTGACCTGAGAAACGA
ATGTGTTTTGTAAAGTGAATTTCAAGTATATTTCGAGAGACCAATCTTGT
ATCTAGAGCCACTTGCACCCTTTTTGATTTTACTGATTGACGTGGTGACA
CTATCAGAATCATAAAAAAGCGAACAAACTGAGGGACTGTGTTCGAATGT
TGTTTTAAGTGAACTACATACACAATAGATAAAACTTGCTCATTACTTGA
ATCTATTTTACGAAGAAGAAAATTCATTTTTCCAGGGAATCTACTCAGTA
CGATGTTGACGTCACGTTCCCCGTTATCGATGCAACGGAGAAATCGGATT
CCGTACAAACAGTCACACGAAAACGAGGTCGGCCTCCCCGTCATTGCGAA
TACGAATGGAGTGAGAAGGATACTTACCGTCTCATTGAATTATGGTCAAA
AGAAAAATTACTTTATAACACTTCGGACGTTTTTTACATGCATCGTGATT
TTCGGGCACAATCTTTAAACAATATTTGTAAAACACTTCGGGATGAAGGG
ATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAAAATGAATAATCTCCG
AAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAAAGAGCCTCGATTCAG
AGCTACCTTTTAAATCGAACTGGAAATTTTATGATGAATTATGTTTCTTG
GACGAGAATTATAAGCCAAGAGCGAATTCCAACTCTATAGAAAGACCAGA
CGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTAATACTGAAGCACCTC
CAACGATGATTTCAAGGTCCATAGATCCGCCGAGCACTAGGCTAGTTGAA
ACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCTAGCTGAAACTTCAAA
GCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCACCACCGTCACCACCAG
AGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCCGAACCTTCTACCACA
ACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGACCGTGTTTCGTAAATC
AAGAAAACATTCCAAAGTGATGTACTCCATGAATGAGTCAGCAAACTTTG
TGGTTGAAACACGACCTGTGTTAGAAAATACGTCCAAAAGTTTCAGAATG
AATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACCAATCCCACCCACACA
ATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCCTACAACAAGGGGTTG
CTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCTGTCGAGTTACCAAGC
ATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGGTATTCAGAACTTAGA
TAAATGTTATGCAGACTTGATTTACCAGCTTCTCGTCTCCATGCCGGATA
GCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAACAAAAACTAATCAAC
CTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACAGAAGCCTTGAAGGGT
TGGTATGTATTATTAGGTACTTATAGGGATAGTTTACCTTATTTTATGGT
AAGATTTTTAGGTCTTTTGTTTATAGCTTTCTTATTCCAGCAGGCACACA
ACGTTGTTTCAACGTCTATCTAACGTTCACTACGTCCATATAACGTTATA
TTAACGTTTAAACAACGTTGTGTGTATAGCTTTGTTATGACTTTTGAACA
GGAAGATTTTATTAGGAAAATATTTTTGAAAACTTTAGATATTCGATTTT
ATGTTATTTTTTTCGCTATTCCTTTCTTCCTCTTTTCCCAGACACTCTAT
ATGTGAAAGTTTTCAATTTCAGCTTTGGCAGAG Coding sequence (CDS) from alignment at scaffold_142:686381..689263- >TCONS_00048390 ID=TCONS_00048390|Name=TCONS_00048390|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at scaffold_142:686381..689263- (Clytia hemisphaerica)
GGAATCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGCAA
CGGAGAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGCCT
CCCCGTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTCAT
TGAATTATGGTCAAAAGAAAAATTACTTTATAACACTTCGGACGTTTTTT
ACATGCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAACA
CTTCGGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAA
AATGAATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAA
AGAGCCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATGAT
GAATTATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAACTC
TATAGAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTA
ATACTGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGAGC
ACTAGGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCT
AGCTGAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCAC
CACCGTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCC
GAACCTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGAC
CGTGTTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAATG
AGTCAGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGTCC
AAAAGTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACC
AATCCCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCC
TACAACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCT
GTCGAGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGG
TATTCAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCTCG
TCTCCATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAA
CAAAAACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACA
GAAGCCTTGAATGAGTGAAGACGTATTGGATGATCCTCCTCCACAGATTG
AAATCAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCATCGGAA
TCTACTCAGTACGATGTTGACGTCACGTTCCCCGTTATCGATGCAACGGA
GAAATCGGATTCCGTACAAACAGTCACACGAAAACGAGGTCGGCCTCCCC
GTCATTGCGAATACGAATGGAGTGAGAAGGATACTTACCGTCTCATTGAA
TTATGGTCAAAAGAAAAATTACTTTATAACACTTCGGACGTTTTTTACAT
GCATCGTGATTTTCGGGCACAATCTTTAAACAATATTTGTAAAACACTTC
GGGATGAAGGGATAGAGTTGTGCTCTCCTGGAGATGTTCGTAACAAAATG
AATAATCTCCGAAACTATTACTCTGCTGAGAAAAGGAAAGAGAAAAAGAG
CCTCGATTCAGAGCTACCTTTTAAATCGAACTGGAAATTTTATGATGAAT
TATGTTTCTTGGACGAGAATTATAAGCCAAGAGCGAATTCCAACTCTATA
GAAAGACCAGACGATGAGTTTGAAGAGTCTGTCTTCCTTGATTCTAATAC
TGAAGCACCTCCAACGATGATTTCAAGGTCCATAGATCCGCCGAGCACTA
GGCTAGTTGAAACCTCAAGCAGGCTTATCGAGACTTCAAGTAGGCTAGCT
GAAACTTCAAAGCAAGGGTCTGTCGGCGCGAAACGAAAACCGTCACCACC
GTCACCACCAGAGGATAGTTCTCCTTCTGCAAAGAGATCAGTGTCCGAAC
CTTCTACCACAACAGCTTCTTCGGAACCTGCCAGCTCCTTCATGACCGTG
TTTCGTAAATCAAGAAAACATTCCAAAGTGATGTACTCCATGAATGAGTC
AGCAAACTTTGTGGTTGAAACACGACCTGTGTTAGAAAATACGTCCAAAA
GTTTCAGAATGAATAAAAGGGTTTCGTTCCCGAAAGAGAATGAACCAATC
CCACCCACACAATGTTGTGATGAGGTAAATGTAGGGAAGCGTACCCTACA
ACAAGGGGTTGCTTACCCTAAAGAACTGACCTTAGTCCCCGTCTCTGTCG
AGTTACCAAGCATAGGAATAGCTTCCACCTCGTCTTCTTCAGCCGGTATT
CAGAACTTAGATAAATGTTATGCAGACTTGATTTACCAGCTTCTCGTCTC
CATGCCGGATAGCGTTGAGAAAGCCATGTTAAAGTTGGAATTTCAACAAA
AACTAATCAACCTGAAGTATAGCCAGTCTGGAAAATTCCCTCCACAGAAG
CCTTGAATGAGTGAAGACGTATTGGATGATCCTCCTCCACAGATTGAAAT
CAAAATTGAAGAAGAAGATGATGACCAGCTTTCGTCTCCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048390-exon-scaffold_142-1575043694:689112..689263 | TCONS_00048390-exon-scaffold_142-1575043694:689112..689263 | Clytia hemisphaerica | exon |
| TCONS_00048390-exon-scaffold_142-1575043694:686381..687928 | TCONS_00048390-exon-scaffold_142-1575043694:686381..687928 | Clytia hemisphaerica | exon |
| TCONS_00048390-exon-scaffold_142-1510915933:689112..689263 | TCONS_00048390-exon-scaffold_142-1510915933:689112..689263 | Clytia hemisphaerica | exon |
| TCONS_00048390-exon-scaffold_142-1510915933:686381..687928 | TCONS_00048390-exon-scaffold_142-1510915933:686381..687928 | Clytia hemisphaerica | exon |
| TCONS_00048390-exon-scaffold_142-1491911889:689112..689263 | TCONS_00048390-exon-scaffold_142-1491911889:689112..689263 | Clytia hemisphaerica | exon |
| TCONS_00048390-exon-scaffold_142-1491911889:686381..687928 | TCONS_00048390-exon-scaffold_142-1491911889:686381..687928 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:686381..689263 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006578 | MADF-dom |
Blast
The following BLAST results are available for this feature:
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