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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048388 ID=TCONS_00048388|Name=TCONS_00048388|organism=Clytia hemisphaerica|type=transcript|length=5400bpRun BLAST on NCBI protein sequence of TCONS_00048388-protein >TCONS_00048388-protein ID=TCONS_00048388-protein|Name=TCONS_00048388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=827bp MLPQNTPHLKNNNIEQYQEQSNEQQAPTQQDLPFVFQVKAGCARDISQELRun BLAST on NCBI transcript from alignment at scaffold_142:620471..640816- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048388 ID=TCONS_00048388|Name=TCONS_00048388|organism=Clytia hemisphaerica|type=transcript|length=20346bp|location=Sequence derived from alignment at scaffold_142:620471..640816- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_142:620471..640816- >TCONS_00048388 ID=TCONS_00048388|Name=TCONS_00048388|organism=Clytia hemisphaerica|type=CDS|length=24840bp|location=Sequence derived from alignment at scaffold_142:620471..640816- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048388 vs. Swiss-Prot (Human)
Match: SET1A (Histone-lysine N-methyltransferase SETD1A OS=Homo sapiens GN=SETD1A PE=1 SV=3) HSP 1 Score: 276.944 bits (707), Expect = 6.930e-75 Identity = 150/309 (48.54%), Postives = 197/309 (63.75%), Query Frame = 1
Query: 4072 FQMRTKEEENKIIWNIYDESLDDEDLKYMKGAFESLQQVASKE--VDSYSW-----SDLPLPPIYKQKRVKGEAKLRIHKTGSARSEGYYKIEMKEKAQYLKSALRQLTVLKQRDDVDEKTAASQASAEQKMKSRENRAMQRRLASSFAQEEF--ASLINYNQALRMRKKALRFQKSSIHNWGLFALEPIAAEEFVCEYVGTMVRSIVAELREQRYEKSGIGSSYLFRLDMESVIDATKTGCNARFINHSCQPNCYAKVILVEGAKKIVIYSKYDIALGEEITYDYKFPIEDEKIPCLCGAPQCRGSLN 4971
++ R++ E+ I+++I++ LD ED+ Y++ +E L Q S ++ W ++L P K+KR + + R H+TGSARSEGYY I KEK +YL +Q + VD + S E R+ QRRL S+ + L+ NQ L+ RKK LRF +S IH WGLFA+EPIAA+E V EYVG +R +VA++RE+RY + GIGSSYLFR+D +++IDATK G ARFINH C PNCYAKVI +E KKIVIYSK I + EEITYDYKFP+ED KIPCLCG CRGSLN
Sbjct: 1415 YEPRSEFEQMTILYDIWNSGLDSEDMSYLRLTYERLLQQTSGADWLNDTHWVHHTITNLTTP---KRKR-RPQDGPREHQTGSARSEGYYPISKKEKDKYLDVCP---VSARQLEGVDTQGTNRVLS--------ERRSEQRRLLSAIGTSAIMDSDLLKLNQ-LKFRKKKLRFGRSRIHEWGLFAMEPIAADEMVIEYVGQNIRQMVADMREKRYVQEGIGSSYLFRVDHDTIIDATKCGNLARFINHCCTPNCYAKVITIESQKKIVIYSKQPIGVDEEITYDYKFPLEDNKIPCLCGTESCRGSLN 1707 HSP 2 Score: 94.3597 bits (233), Expect = 5.122e-19 Identity = 53/161 (32.92%), Postives = 88/161 (54.66%), Query Frame = 2
Query: 983 RNYKLL----LDPMIKKGHTKITRYDGV--LTGQPPVVP----KDPR---QRKSKIWTLEQCDLPVPTPSMDKNYVGPMPRDTIRFSNLNDNIDRKFLYELCEAYGDILEHKVYFDPKSNRHMGTGKVVFDNKTKTDSVVSLMDGRSVMGNEIKAWIDVKN 1426
RNYKL+ LDP +++ K+ RYDGV +P +DPR + K++ ++L PVP +D+ Y+G +P + F+ LNDN+ FL ++C YG++ E ++ P++ +H+G +V+F + V + SVMGN I A +D+K
Sbjct: 18 RNYKLIVDPALDPALRRPSQKVYRYDGVHFSVNDSKYIPVEDLQDPRCHVRSKNRDFSL-----PVPKFKLDEFYIGQIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 173 The following BLAST results are available for this feature:
BLAST of TCONS_00048388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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