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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048379 ID=TCONS_00048379|Name=TCONS_00048379|organism=Clytia hemisphaerica|type=transcript|length=1428bp
acgttgcgtgccagctgggttaacACTCCTTATCGTAAATTACTTTCCAC
ATATGATTGAGTTCATTTTCTTGGACAGCATTCTAATAAATAAAGGATTC
ATAAAATCTTCTGGCGNGAGTTCATTTTCTTGGACAGCATTCTAATAAAT
AAAGGATTCATTAAATCTTCTGGCGAAACAACGAAAgtaccatctttgtt
tattACTGGAGACTCAGCGATGTGATCATCTACAACAATAATAATTGCAT
TGTCCAATGTAAAAGGAAGAGCGCCCAAATCTGGTTTTACGCTTTTGTTA
TAAAAGATTATGTGTAACTTAATACCTCTTATATCCATGGCTTTGATAAC
TTCGCTTGTTGATTTTTGATCTTCCTTCCGTACAAGTCTTGGTTCttttt
ccaaagattttaaactgTATGGACCCCAGTATGGCTTGCTTGACCAATCG
CCAACCACTAATACGCGGTAGAATGTGACAGAAGAATTAAATTGTTTCTG
TAGTATTCCTATTGAAAAAGCCATATCAACATTTTTCTGGCCAGCAGTTT
GGTTTTGTCTTAAGAAATTGATTGACCATACAAAGATATTAACCTCCTTT
GAGTTTGACACGTGACAATGGTACTGGTTTCTCGTATATTTCTGAAGCCA
ATCGTAAGATGGATTGTTTATGAGGTCCAATAGAATAGAATGAAGATGTG
GATTGAAAGATAGCGTGTTAAAGgagTGAAATTTTCGAACGCTGGCAATG
ACGTGATATCAACAAGTGTGGATCAAAAGATCAAGTTATGGGATGCTCGA
AATTTGAAATTAGTCAAAGAATTGTTCACTGAtgttgctgatgtcagcaa
tcTAGAAACGTGGCAGACCGAGGATGAATTAAACTTGATCATCACTGGGT
TTGGTTTGGAAATTATCTCTCTCAAACTGGATGAGTTATGACACCAATAG
AATCTGATAGTgcaagaaaattagttttgtaCTTTCTCGActtaataaga
atttttttcctttGATAATTTTGTAACTAATAGTTTCAAAGTATTTTTAC
ATTAGGAGCGAAAGAATACCAAATGCAATCCCTTAAATTTCGTTATGAAG
GTTTTTtgttgtgaaattttaaatttcaagagaAAATTTCAAGAGATCGC
TCTTGGCTGTGTCTGCTTGCAGTGGTCTTTGAGGAAATCGTTTCGATTAA
AAGATACCACTTGCTAATGTGTTTTCGacaggaatttgatgcaagcattt
tttactttttgttatATATACAAAATCGTTTGGCCTGACTTAGGAAATGT
TCATGTATCGAGGCTTGATATGATATTGTCGCTAGCATAGGTTATAGAAa
tgatatttttatcttttatgtAATGTAggaatttttttatatacacaAAG
GTAAGATTAAGATGTTGGAAGAATTGAG Run BLAST on NCBI transcript from alignment at scaffold_142:526491..530928- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048379 ID=TCONS_00048379|Name=TCONS_00048379|organism=Clytia hemisphaerica|type=transcript|length=4438bp|location=Sequence derived from alignment at scaffold_142:526491..530928- (Clytia hemisphaerica)
ACGTTGCGTGCCAGCTGGGTTAACACTCCTTATCGTAAATTACTTTCCAC
ATATGATTGAGTTCATTTTCTTGGACAGCATTCTAATAAATAAAGGATTC
ATAAAATCTTCTGGCGNGAGTTCATTTTCTTGGACAGCATTCTAATAAAT
AAAGGATTCATTAAATCTTCTGGCGAAACAACGAAAGTACCATCTTTGTT
TATTACTGGAGACTCAGCGATGTGATCATCTACAACAATAATAATTGCAT
TGTCCAATGTAAAAGGAAGAGCGCCCAAATCTGGTTTTACGCTTTTGTTA
TAAAAGATTATGTGTAACTTAATACCTCTTATATCCATGGCTTTGATAAC
TTCGCTTGTTGATTTTTGATCTTCCTTCCGTACAAGTCTTGGTTCTTTTT
CCAAAGATTTTAAACTGTATGGACCCCAGTATGGCTTGCTTGACCAATCG
CCAACCACTAATACGCGGTAGAATGTGACAGAAGAATTAAATTGTTTCTG
TAGTATTCCTATTGAAAAAGCCATATCAACATTTTTCTGGCCAGCAGTTT
GGTTTTGTCTTAAGAAATTGATTGACCATACAAAGATATTAACCTCCTTT
GAGTTTGACACGTGACAATGGTACTGGTTTCTCGTATATTTCTGAAGCCA
ATCGTAAGATGGATTGTTTATGAGGTCCAATAGAATAGAATGAAGATGTG
GATTGAAAGATAGCGTGTTAAAGGTAATGTTTATTATCTTTTGTCTTGCT
AACCAGTTTCCACTTTGGGTGCAGAAAACAGAGTTACCTTTTTGGCATAA
CAAAATGATATTATATTTGTCTTGTGTCACTTTCAGTTTGTCTGCGATTA
TCGATTTATGTGTTATTTCTTTCTCAGGGTAAATATAATAACTGAAAAAC
AGTAAGGTTTGCTCTATTTCATCGTTACTCCGAGGAATATTTGACAGAAG
ATTCAAAATGTCGTTATCGTCTGTGCTTGTCATTGCCAACCATTCTGTCT
CCAGAAATCGAACATAGTTGTCTTCAGTTTGTAGAATACAGCGGTCTTGA
ATGGGTGAATAAAACCATACTTCAAAACAAGATGTTTCCAGTAAAGCTTT
TACTAAGTACCTTAGCTGCATGCTTTGATGTTTAATAGATTCTTCTATCC
AGTCGACTCCTTTCCATTGCTGGTAAATATCAATGTGAGGAATGACGGTG
ATATTTTTTCTCTCCACACACAATATTGATTGTGAAAAAACTAATCTGTT
GTTTGCAGTTAAAAGNTTTTCCTCTCCACACACAATATTGATTGTGAAAA
AACTAATCTGCTGTTTGCAGTTAAAAGTAATAGCCATACTGGAATGGTTA
TTACTTGAATATTTTCCATTTTTTGTACAGCGAGAAAGTATGAATGTCCC
AACTGACAATGATGAAAGTGTCACAACAAACTTGCTCTTTCCTTTAGAGG
ACGGACAAACAGTAGATTATTTTTTATACAATGAAAGTCAATTACTATCA
TTAGACAGCTAAATAGACTACACGTTTTTTTTATAAGAACATACCTTCGA
ATGTTCTTTCTTAACTCGTTCTTTCTTAACTTTGTTCTTATTTTCGCCAT
TTTTTAAACATTTTTGTTCATTTTCCTAAGAAATCAGGTGTTTTAGAGTC
CGCAAAGCCTTAAAATGTTCCTAACTTGTTCTTTATCATTTTGGACATCG
AAACCTTATGTTCTTATACATGTGTAGCAATTAAATCAAACGCTACTTAA
TGTGTGTAGAATTAACTTTAAACAAAAACATTTTTATCATTTTTATCGAA
GCCTTCATTATCGAAGTCAGTTTCCCAAGTATTAAAGTTAGTCTATACAT
CTATCTAGCTGTCTAATTTTTCTTTTAGTCTGCGCCACAATTAGTTTTAT
GTGGCGTGACATACTGGACAAATCAATCTGCCCCAGGGTGCAATACGCAG
TCTCAATAAGGACAAAATACATTCGCCTGCTCTGCCATTCAATCTCCTTA
AAGAAGATAGTAATCGGACAGAAATTCTTTGAATTTATTTGAATTTCTTC
ACCCATTTATGAAGTTGTTTGCCCCGGGGGGGGGGGGTACTAGGGCAAAA
CAGATTACGGGGATGTGCCGCTGGTCAGGGTACTTTTTTTTAACCTCCAC
CAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAATCAGTCCCAC
GTAGGGTGCCTTTTTTGAAAAATTTGGTGAAAAATTTCAGTCCCATTCAG
GGTCACTTTTCTCGCAAATTTCGGCAAAATTTTTAAGAAAACGAGTCCCA
CGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACACCCGTCGGCCGGCAA
GAGTAGTACCTCCCCTCCCGGGTGTTTGCTAAGTATGTAAAAGCAATGCA
AAATATTTTCGTACTCCATTAAAAATGTAGACCATATTTTTTAATTATGT
TAAAACACTGTAATGTTTTCGCAAGCTCAGCACATTTTTAAGGGATGTGG
GAACTTACATGCTTTTTGACTCAATTTTCCCATAATAACAATGAATAAAC
TCTAGCCTGTATAAGAGTCTGTGTATTACACAGTAATGCAAGTGTATATT
ACAATAGAAATCTCTTAGAAATTCCTCGAGAGAATTCTATTGTAATACTC
CGAAACAATCCCACAATGCATCACTTTTTTAGAAAAATCAAAAACTCTGA
TAAGGTCTATTTGAAATTTTACATTTTCAAGATTTTCTTTTTTTAAAGGA
GTGAAATTTTCGAACGCTGGCAATGACGTGATATCAACAAGTGTGGATCA
AAAGATCAAGTTATGGGATGCTCGAAATTTGAAATTAGTCAAAGAATTGT
TCACTGATGTTGCTGATGTCAGCAATCTAGAAACGTGGCAGACCGAGTGA
GTTGTCATGAAAAAATTAAGATAAGCTTTCATATTCATGATATTCATGAC
GTAATGTTTTCTACGGAAATACCCCGGTTTTAGCTAGTAGTGGCAAATTT
AAACTAGACAAAAGTTGTATAAAATTTGCCAATACTTGCAAAAACTGGGG
TCTTTCCGTAGAAAAGATTACGTCATGAATATCATGAATATTACTTTAAC
GACTGCTTCGTTTTGAAACGATTACCTAGAAAACTAAATTATTTGAGTCA
TTAAAGCGATATTTTATAAAACCGAGGAAAATTCTTATGAACTTCCCTCG
TAATCAATTACCATAGCAATATTTTGAAAACAAGGTAAGAATTGCTTCTG
ACGTAATTTATGAAAGGTCTATTTAATGAGAAGATAATGATAGGTTATAG
GGTGACCTTAATCACCCCTCCTCTCGTAAGAAGTCACTGAGTGTGAATTT
TCGTCACAGCTGGAAGAATAAATATCAACCAAGTTATCAAGAACCCAAGA
TACACAAAAGAAAGCGGAACAGAGTTGAAATACTTTAATGTTGAGCTCAT
CCGCGAAATTTCAAGATTTTGTGGAGACCTAATTTCGCGGATGGCACTAT
CGGGAGAGAGTATTTTCACGATTTTGTGCCTTTAACTGCCAAATCATGCA
TGTTGGTTGTTGAAATGCACATTGTTAGCGCTTCTTTGATACCAGTAAAC
ATTTAAAAAGTGATTTATTTTACATTTTCAGTTTACATTTTCTTCGAGTT
TTTTTCAAAAATATTTCACGGATAAGGCCTTTTCAAATTTACATTGGGAC
TTAATTTCGCAGATGACACTACAAGAATCATAATAACCTTAATCATAAAT
ATCCTTAGATTGAACAGATAAAATGCATCTTATTTTGAGGATTTTACCTA
ACTTTTTATTTCGAACACACTGTAAAATTCCAAAATATCGGACATTTTTT
GAGCAGGTTTTGTTTTATTTGTTTTATTTAGGGATGAATTAAACTTGATC
ATCACTGGGTTTGGTTTGGAAATTATCTCTCTCAAACTGGATGAGTTATG
ACACCAATAGAATCTGATAGTGCAAGAAAATTAGTTTTGTACTTTCTCGA
CTTAATAAGAATTTTTTTCCTTTGATAATTTTGTAACTAATAGTTTCAAA
GTATTTTTACATTAGGAGCGAAAGAATACCAAATGCAATCCCTTAAATTT
CGTTATGAAGGTTTTTTGTTGTGAAATTTTAAATTTCAAGAGAAAATTTC
AAGAGATCGCTCTTGGCTGTGTCTGCTTGCAGTGGTCTTTGAGGAAATCG
TTTCGATTAAAAGATACCACTTGCTAATGTGTTTTCGACAGGAATTTGAT
GCAAGCATTTTTTACTTTTTGTTATATATACAAAATCGTTTGGCCTGACT
TAGGAAATGTTCATGTATCGAGGCTTGATATGATATTGTCGCTAGCATAG
GTTATAGAAATGATATTTTTATCTTTTATGTAATGTAGGAATTTTTTTAT
ATACACAAAGGTAAGATTAAGATGTTGGAAGAATTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048379-exon-scaffold_142-1575043694:530206..530928 | TCONS_00048379-exon-scaffold_142-1575043694:530206..530928 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1575043694:528033..528180 | TCONS_00048379-exon-scaffold_142-1575043694:528033..528180 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1575043694:526491..527047 | TCONS_00048379-exon-scaffold_142-1575043694:526491..527047 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1510915933:530206..530928 | TCONS_00048379-exon-scaffold_142-1510915933:530206..530928 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1510915933:528033..528180 | TCONS_00048379-exon-scaffold_142-1510915933:528033..528180 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1510915933:526491..527047 | TCONS_00048379-exon-scaffold_142-1510915933:526491..527047 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1491911889:530206..530928 | TCONS_00048379-exon-scaffold_142-1491911889:530206..530928 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1491911889:528033..528180 | TCONS_00048379-exon-scaffold_142-1491911889:528033..528180 | Clytia hemisphaerica | exon |
| TCONS_00048379-exon-scaffold_142-1491911889:526491..527047 | TCONS_00048379-exon-scaffold_142-1491911889:526491..527047 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:526491..530928 - |
Blast
The following BLAST results are available for this feature:
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